AT2G21200

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002411
Physical Location & Seq
Reverse (-)
9083906 .. 9084803
898 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21200.1

Sequence Viewer

Length: 261 bp
ATGGCTATGATGCGAGGTATTTTGGCTGCAAGAAAGATTCTAACAAGCAAAGCAGCTTCAACACCAAAAGGATTTCTTGCGGTATATGTAGGGGAGAGTCAGAAGAAGAGATATATGGTGCCAGTTTCGTTCTTGAACCAGCCTTCTTTTCAAGCTCTGCTGAGTACAGCCGAAGAAGAGTTCGGGTTTGATCATCCTATGGGTGGCTTGACAATCCCTTGTCCTGAAGATACTTTTGTCGCTGCAGCTTCTCAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

86

Amino Acids

9.3

Weight (kDa)

7.89

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 81 6.1e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AciI CCGC 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 3 cut(s) 60, 136, 152
AluBI AGCT 4 cut(s) 56, 155, 248, 256
AluI AGCT 4 cut(s) 56, 155, 248, 256
ApeKI GCWGC 4 cut(s) 26, 53, 242, 245
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BanI GGYRCC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 13, 65, 229, 257
BclI TGATCA 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 4 cut(s) 27, 54, 243, 246
BlsI GCNGC 4 cut(s) 28, 55, 244, 247
BmiI GGNNCC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 4 cut(s) 13, 65, 229, 257
BshNI GGYRCC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 101, 171
BstDEI CTNAG 2 cut(s) 161, 252
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 4 cut(s) 13, 65, 229, 257
BtsCI GGATG 1 cut(s) 193
Csp6I GTAC 1 cut(s) 165
CviJI RGCY 9 cut(s) 5, 26, 56, 142, 155, 170, 207, 248, 256
CviKI_1 RGCY 9 cut(s) 5, 26, 56, 142, 155, 170, 207, 248, 256
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 161, 252
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 101, 171
EarI CTCTTC 2 cut(s) 101, 171
Eco57I CTGAAG 1 cut(s) 246
FaiI YATR 7 cut(s) 8, 85, 87, 114, 116, 200, 259
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 27, 54, 243, 246
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 4 cut(s) 27, 54, 243, 246
GluI GCNGC 4 cut(s) 27, 54, 243, 246
HinfI GANTC 2 cut(s) 37, 97
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 133, 224
HpyAV CCTTC 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 29, 245
HpyF3I CTNAG 2 cut(s) 161, 252
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 135, 152, 237
Lsp1109I GCAGC 4 cut(s) 13, 65, 229, 257
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 5 cut(s) 115, 118, 185, 188, 239
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 1 cut(s) 8
NdeII GATC 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 4 cut(s) 28, 55, 244, 247
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 247
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SatI GCNGC 4 cut(s) 27, 54, 243, 246
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 106
SetI ASST 5 cut(s) 19, 58, 157, 250, 258
SfcI CTRYAG 1 cut(s) 243
SsiI CCGC 1 cut(s) 80
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 1 cut(s) 37
TseI GCWGC 4 cut(s) 26, 53, 242, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.