AT3G03820

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002411
Physical Location & Seq
Reverse (-)
976715 .. 977474
760 bp
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UTR
Exon/CDS
Intron
AT3G03820.1

Sequence Viewer

Length: 291 bp
ATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGATTCTTGGTGGCTCAGTAGCAGGAACGAGGAAAGAAACTTCAGCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAGAGGAAGAAGCAGAGACACCTTGTGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGCTCTACTCATCAAAGCTGAAGAAGAGTTCGGATTCAATCATCCGATGGGCGGCTTGACGATCCCTTGTCCTGAAGATACTTTCCTCACTGTAACGTCTCAGATCCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

96

Amino Acids

10.45

Weight (kDa)

9.52

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 92 1.8e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 228
AclWI GGATC 2 cut(s) 232, 274
AcuI CTGAAG 3 cut(s) 60, 216, 270
AdeI CACNNNGTG 1 cut(s) 142
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 145, 227
AgsI TTSAA 3 cut(s) 160, 176, 214
AluBI AGCT 2 cut(s) 179, 194
AluI AGCT 2 cut(s) 179, 194
Alw26I GTCTC 3 cut(s) 127, 154, 279
AlwI GGATC 2 cut(s) 232, 274
ApeKI GCWGC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 122
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 217
BcoDI GTCTC 3 cut(s) 127, 154, 279
BisI GCNGC 2 cut(s) 27, 229
BlsI GCNGC 2 cut(s) 28, 230
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 227
Bse118I RCCGGY 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 145, 227
BseMII CTCAG 2 cut(s) 63, 290
BseXI GCAGC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 145, 227
BsmAI GTCTC 3 cut(s) 127, 154, 279
BsmBI CGTCTC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 237, 279
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 62, 289
BspPI GGATC 2 cut(s) 232, 274
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 237, 279
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 49, 276
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 240, 282
BstMAI GTCTC 3 cut(s) 127, 154, 279
BstMBI GATC 2 cut(s) 237, 279
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 264
Cfr10I RCCGGY 1 cut(s) 145
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 22
CviJI RGCY 8 cut(s) 5, 26, 48, 117, 166, 179, 194, 231
CviKI_1 RGCY 8 cut(s) 5, 26, 48, 117, 166, 179, 194, 231
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 49, 276
DpnI GATC 2 cut(s) 239, 281
DpnII GATC 2 cut(s) 237, 279
DraIII CACNNNGTG 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 154
Eco57I CTGAAG 3 cut(s) 60, 216, 270
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 1 cut(s) 25
FaiI YATR 2 cut(s) 23, 154
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 27, 229
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 27, 229
GluI GCNGC 2 cut(s) 27, 229
HapII CCGG 1 cut(s) 146
Hin1II CATG 1 cut(s) 25
HinfI GANTC 2 cut(s) 37, 210
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 3 cut(s) 209, 222, 279
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 105, 272
HpyCH4V TGCA 2 cut(s) 29, 98
HpyF3I CTNAG 2 cut(s) 49, 276
HpySE526I ACGT 2 cut(s) 105, 272
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 2 cut(s) 237, 279
LpnPI CCDG 5 cut(s) 42, 131, 159, 176, 261
Lsp1109I GCAGC 1 cut(s) 13
MaeII ACGT 2 cut(s) 105, 272
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 239, 281
MboI GATC 2 cut(s) 237, 279
MboII GAAGA 5 cut(s) 46, 136, 209, 212, 263
MflI RGATCY 1 cut(s) 279
MnlI CCTC 4 cut(s) 8, 57, 114, 272
MspI CCGG 1 cut(s) 146
NdeII GATC 2 cut(s) 237, 279
NlaIII CATG 1 cut(s) 25
PfeI GAWTC 2 cut(s) 37, 210
PkrI GCNGC 2 cut(s) 28, 230
PsuI RGATCY 1 cut(s) 279
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SatI GCNGC 2 cut(s) 27, 229
Sau3AI GATC 2 cut(s) 237, 279
SetI ASST 6 cut(s) 19, 108, 141, 181, 196, 275
SsiI CCGC 1 cut(s) 228
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 2 cut(s) 108, 275
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 2 cut(s) 37, 210
TscAI CASTG 2 cut(s) 105, 271
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 2 cut(s) 105, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.