Rw5G035040

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002411
Physical Location & Seq
Forward (+)
60511754 .. 60511978
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035040.1

Sequence Viewer

Length: 225 bp
ATGCATGTTGATGTTCCAAAAGGCTTCTTACCGGTGTATATGGGAGAATGTAGTGAAAAGAAGAGATACATAGTTCCAGTTTCTTTCTTGAGTCAGCCTTCATTTCAAGAGTTACTGAGTAAGGCAGAGGAAGAATATGGATTCGACCATCCAATGGGTGGACTGACAATTCCTTGCCGAGAAGAAACCTTCATTGATTTCACTTCTTGCTTGAAGGGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

74

Amino Acids

8.4

Weight (kDa)

4.98

Isoelectric Point (pI)

70.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 4 - 70 3.1e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 154, 158
AfiI CCNNNNNNNGG 2 cut(s) 154, 158
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 2 cut(s) 107, 214
AsiGI ACCGGT 1 cut(s) 31
BccI CCATC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 158
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 154, 158
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 31
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 154, 158
BspCNI CTCAG 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 8
BtsCI GGATG 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 31
CspAI ACCGGT 1 cut(s) 31
CviAII CATG 1 cut(s) 5
CviJI RGCY 3 cut(s) 24, 97, 220
CviKI_1 RGCY 3 cut(s) 24, 97, 220
DdeI CTNAG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 5 cut(s) 6, 39, 41, 71, 138
FatI CATG 1 cut(s) 4
FokI GGATG 1 cut(s) 135
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 8
HinfI GANTC 2 cut(s) 91, 141
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 88, 107
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 108, 199, 208
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 1 cut(s) 8
LpnPI CCDG 2 cut(s) 45, 90
MaeIII GTNAC 1 cut(s) 111
MboII GAAGA 3 cut(s) 73, 143, 194
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 1 cut(s) 121
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 9
MspI CCGG 1 cut(s) 32
NlaIII CATG 1 cut(s) 8
NmeAIII GCCGAG 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 2 cut(s) 154, 158
PinAI ACCGGT 1 cut(s) 31
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 9
SchI GAGTC 1 cut(s) 100
SetI ASST 1 cut(s) 191
SgeI CNNG 8 cut(s) 17, 44, 89, 100, 119, 186, 191, 219
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 168
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 168
TfiI GAWTC 1 cut(s) 141
TspDTI ATGAA 2 cut(s) 90, 181
Van91I CCANNNNNTGG 2 cut(s) 154, 158
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.