Rorug05G0302300

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002411
Physical Location & Seq
Forward (+)
35095370 .. 35096374
1005 bp
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UTR
Exon/CDS
Intron
Rorug05G0302300.1

Sequence Viewer

Length: 390 bp
ATGAGAACCTTGCGGTGCAAAGCTTTTTTTCTGCATCTCTTTCTTTTTCTGTTACTCAATGTCACCCACCTTTTCACTTTTGTGCAGACACTTTGCCATGTTGATGAGGGCTCTGCCTTGTTGCAATTCAAGGAAAGCTTTACTGTAATACACAAGTCTGCGCATCCAAAGTTTGCATCTTGGACAGCGCAAGAAGGACAGATGAATCTTAGTTGTTGCTCATGGATAGGTGTCAAGTGCGATGAGTCTCTGGCTATGTCATTGGCCTTGACCTCAGAAGCAGTTATCTTTATGGTTCTATCAATTCCACCAGCAGCCTTTTTCAACTTGTTCACTTGCAAAGGCTGGACCTTTCCGATAAGGACTTCAGTCTTTCTGAAATACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

129

Amino Acids

14.7

Weight (kDa)

8.61

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 35 - 81 6.1e-10 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 162
AciI CCGC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 351
AgsI TTSAA 2 cut(s) 130, 325
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 2 cut(s) 23, 138
AluI AGCT 2 cut(s) 23, 138
Alw26I GTCTC 1 cut(s) 252
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 314
AspLEI GCGC 2 cut(s) 163, 190
AspS9I GGNCC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 348
BanII GRGCYC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 252
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 348
BmsI GCATC 3 cut(s) 43, 172, 185
BoxI GACNNNNGTC 1 cut(s) 368
BseGI GGATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 104
BshFI GGCC 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 113
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 209, 274
BstF5I GGATG 1 cut(s) 163
BstHHI GCGC 2 cut(s) 163, 190
BstMAI GTCTC 1 cut(s) 252
BstPAI GACNNNNGTC 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 163
CfoI GCGC 2 cut(s) 163, 190
Cfr13I GGNCC 1 cut(s) 348
CviAII CATG 2 cut(s) 98, 222
CviJI RGCY 7 cut(s) 23, 111, 138, 254, 266, 317, 345
CviKI_1 RGCY 7 cut(s) 23, 111, 138, 254, 266, 317, 345
DdeI CTNAG 2 cut(s) 209, 274
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 2 cut(s) 101, 225
FaiI YATR 4 cut(s) 99, 223, 257, 293
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 2 cut(s) 97, 221
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 315
FspI TGCGCA 1 cut(s) 162
GlaI GCGC 2 cut(s) 162, 189
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 266
HhaI GCGC 2 cut(s) 163, 190
Hin1II CATG 2 cut(s) 101, 225
Hin6I GCGC 2 cut(s) 161, 188
HinP1I GCGC 2 cut(s) 161, 188
HindIII AAGCTT 2 cut(s) 21, 136
HinfI GANTC 2 cut(s) 205, 245
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 3 cut(s) 277, 357, 378
Hpy8I GTNNAC 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 6 cut(s) 18, 34, 85, 124, 176, 339
HpyF3I CTNAG 2 cut(s) 209, 274
Hsp92II CATG 2 cut(s) 101, 225
HspAI GCGC 2 cut(s) 161, 188
LpnPI CCDG 3 cut(s) 236, 324, 331
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 3 cut(s) 43, 172, 185
MaeIII GTNAC 2 cut(s) 51, 61
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 2 cut(s) 125, 303
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 2 cut(s) 100, 283
MslI CAYNNNNRTG 2 cut(s) 80, 102
NlaIII CATG 2 cut(s) 101, 225
NmuCI GTSAC 1 cut(s) 61
NsbI TGCGCA 1 cut(s) 162
OliI CACNNNNGTG 1 cut(s) 80
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PshAI GACNNNNGTC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 348
RseI CAYNNNNRTG 2 cut(s) 80, 102
SatI GCNGC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 113
SetI ASST 7 cut(s) 11, 25, 72, 140, 232, 275, 353
SfaNI GCATC 3 cut(s) 43, 172, 185
SinI GGWCC 1 cut(s) 348
SmiMI CAYNNNNRTG 2 cut(s) 80, 102
Sse9I AATT 2 cut(s) 125, 303
SsiI CCGC 1 cut(s) 13
TaaI ACNGT 1 cut(s) 145
TasI AATT 2 cut(s) 125, 303
TfiI GAWTC 1 cut(s) 205
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.