AT4G38825

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002411
Physical Location & Seq
Forward (+)
18121526 .. 18122010
485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38825.1

Sequence Viewer

Length: 270 bp
ATGGGAGTGTTCCGAGGTCTTATGGGCGCAAAGAAGATCTTTCAAGGTCGATCAATGGCAGCTTCGACACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAAAGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAATCTGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTAGATACATTTATCACCGTCACTTCTCAGCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

89

Amino Acids

9.77

Weight (kDa)

9.3

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 18 - 86 6e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 3 cut(s) 44, 142, 158
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 3 cut(s) 62, 161, 262
AluI AGCT 3 cut(s) 62, 161, 262
Alw26I GTCTC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 238
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 227
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 36
BisI GCNGC 2 cut(s) 60, 211
BlsI GCNGC 2 cut(s) 61, 212
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 199, 219
BseLI CCNNNNNNNGG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 36, 50, 196
BspACI CCGC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 36, 50, 196
Bst4CI ACNGT 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 199, 219
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 3 cut(s) 39, 53, 199
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 3 cut(s) 36, 50, 196
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtsCI GGATG 2 cut(s) 199, 219
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 6 cut(s) 62, 105, 148, 161, 213, 262
CviKI_1 RGCY 6 cut(s) 62, 105, 148, 161, 213, 262
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 38, 52, 198
DpnII GATC 3 cut(s) 36, 50, 196
FaiI YATR 3 cut(s) 23, 122, 136
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 66, 98
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 60, 211
FokI GGATG 2 cut(s) 186, 206
Fsp4HI GCNGC 2 cut(s) 60, 211
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 60, 211
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 159
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 14, 178
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 36, 50, 196
LpnPI CCDG 4 cut(s) 119, 141, 158, 243
Lsp1109I GCAGC 1 cut(s) 71
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 250
MalI GATC 3 cut(s) 38, 52, 198
MboI GATC 3 cut(s) 36, 50, 196
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 1 cut(s) 8
NdeII GATC 3 cut(s) 36, 50, 196
NmuCI GTSAC 1 cut(s) 250
PkrI GCNGC 2 cut(s) 61, 212
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SatI GCNGC 2 cut(s) 60, 211
Sau3AI GATC 3 cut(s) 36, 50, 196
SetI ASST 6 cut(s) 19, 49, 64, 96, 163, 264
SfcI CTRYAG 1 cut(s) 231
SsiI CCGC 1 cut(s) 210
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 49, 65
TauI GCSGC 1 cut(s) 213
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 125, 141, 254
TspRI CASTG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.