Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002411

Physical Location & Seq

Genomic Coordinates Forward (+)

5968352 .. 5969190

Gene Structure 839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGCATCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAATCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0019897 GO:0019898 GO:0030307 GO:0032879 GO:0040008 GO:0044425 GO:0044459 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0065007 GO:0065008 GO:0071944 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

88

Amino Acids

9.62

Weight (kDa)

9.25

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	15 - 86	5.8e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21200 AT3G03820 AT3G03830 AT3G03840 AT3G03850 AT4G13790 AT4G38825 AT4G38850 AT5G18010 AT5G18020 AT5G18030 AT5G18050 AT5G18060 AT5G18080
fragaria_vesca	FvH4_2g10800
malus_domestica	MD05G1052500.v1.1 MD05G1052800.v1.1
prunus_persica	Prupe.8G081200_v2.0.a1 Prupe.8G081400_v2.0.a1 Prupe.8G081600_v2.0.a1 Prupe.8G081800_v2.0.a1 Prupe.8G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268871 RchiOBHm_Chr6g0268931
rosa_laevigata	RLG00000004110 RLG00000013894
rosa_multiflora	Rmu_sc0000869.1_g000022 Rmu_sc0003073.1_g000028
rosa_roxburghii	Rroxscaffold_1G00023460 Rroxscaffold_1G00023500 Rroxscaffold_7G00199150
rosa_rugosa	Rorug05G0302200 Rorug05G0302300 Rorug05G0302700 Rorug06G0043400
rosa_samantha	Rh7BG159700 Rh7BG381800
rosa_wichuraiana	Rw5G034950 Rw5G035040 Rw6G014090 Rw6G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 121
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccBSI	CCGCTC	2 cut(s)	48, 127
AciI	CCGC	5 cut(s)	46, 54, 62, 83, 125
AclWI	GGATC	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 135, 167
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AlwI	GGATC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	22
BanI	GGYRCC	2 cut(s)	64, 121
BclI	TGATCA	1 cut(s)	193
BisI	GCNGC	3 cut(s)	46, 63, 125
BlsI	GCNGC	3 cut(s)	47, 64, 126
BmiI	GGNNCC	3 cut(s)	66, 123, 260
BmsI	GCATC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	178
BshNI	GGYRCC	2 cut(s)	64, 121
BslI	CCNNNNNNNGG	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	193, 216
BspACI	CCGC	5 cut(s)	46, 54, 62, 83, 125
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	66, 123, 260
BspPI	GGATC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	2 cut(s)	64, 121
BsrBI	CCGCTC	2 cut(s)	48, 127
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	193, 216
Bst6I	CTCTTC	3 cut(s)	104, 165, 174
BstBAI	YACGTR	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	41, 164
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	196, 219
BstMBI	GATC	2 cut(s)	193, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSNI	TACGTA	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	7 cut(s)	5, 45, 102, 141, 158, 210, 259
CviKI_1	RGCY	7 cut(s)	5, 45, 102, 141, 158, 210, 259
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	41, 164
DpnI	GATC	2 cut(s)	195, 218
DpnII	GATC	2 cut(s)	193, 216
Eam1104I	CTCTTC	3 cut(s)	104, 165, 174
EarI	CTCTTC	3 cut(s)	104, 165, 174
Eco105I	TACGTA	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	249
FaiI	YATR	1 cut(s)	133
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	46, 63, 125
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	46, 63, 125
GluI	GCNGC	3 cut(s)	46, 63, 125
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	156, 247
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	41, 164
HpySE526I	ACGT	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	193, 216
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	53, 264
LpnPI	CCDG	2 cut(s)	116, 240
LweI	GCATC	1 cut(s)	65
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	195, 218
MbiI	CCGCTC	2 cut(s)	48, 127
MboI	GATC	2 cut(s)	193, 216
MboII	GAAGA	6 cut(s)	46, 118, 121, 152, 191, 242
MnlI	CCTC	1 cut(s)	169
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	193, 216
NlaIV	GGNNCC	3 cut(s)	66, 123, 260
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	47, 64, 126
Ppu21I	YACGTR	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	66, 123, 260
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	3 cut(s)	46, 63, 125
Sau3AI	GATC	2 cut(s)	193, 216
SetI	ASST	4 cut(s)	93, 148, 160, 239
SfaNI	GCATC	1 cut(s)	65
SgeI	CNNG	7 cut(s)	92, 115, 148, 167, 187, 234, 239
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SnaBI	TACGTA	1 cut(s)	91
SsiI	CCGC	5 cut(s)	46, 54, 62, 83, 125
TaiI	ACGT	1 cut(s)	93
TauI	GCSGC	3 cut(s)	48, 65, 127
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	138, 229
Van91I	CCANNNNNTGG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.