AT4G13790

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002411
Physical Location & Seq
Reverse (-)
7999516 .. 8000372
857 bp
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UTR
Exon/CDS
Intron
AT4G13790.1

Sequence Viewer

Length: 279 bp
ATGGCTTTCTTAAGGAGTTTTTTCGCTACCAAGCATATCATTCGCCGGTCTTTTACTACGGAATCATTATCAACGCCTAAAGGGTTCTTTGCTGTGTATGTTGGAGAAAATCTGAAGAAGAAGAGATATCTTGTTCCGGTTTGTTACTTGAACAAGCCATCTTTCCAAGCTTTGCTTAGGAAAGCAGAAGAAGAGTTCGGTTTTAATCATCCAACGGGCGGTTTGAGTTTACCATGCGACGAAGCTTTCTTCTTCACTGTCACTTCTCAGATTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

92

Amino Acids

10.58

Weight (kDa)

9.69

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 89 5.1e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 218
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 2 cut(s) 170, 245
AluI AGCT 2 cut(s) 170, 245
BccI CCATC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BfrI CTTAAG 1 cut(s) 10
Bpu10I CCTNAGC 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 45
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 218
BsiSI CCGG 2 cut(s) 46, 137
BslI CCNNNNNNNGG 1 cut(s) 218
BspACI CCGC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 116, 186
BstAFI CTTAAG 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 176, 267
BstF5I GGATG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 255
Cfr10I RCCGGY 1 cut(s) 45
CviAII CATG 1 cut(s) 234
CviJI RGCY 4 cut(s) 5, 157, 170, 245
CviKI_1 RGCY 4 cut(s) 5, 157, 170, 245
DdeI CTNAG 2 cut(s) 176, 267
Eam1104I CTCTTC 2 cut(s) 116, 186
EarI CTCTTC 2 cut(s) 116, 186
Eco32I GATATC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 134
EcoRV GATATC 1 cut(s) 128
FaeI CATG 1 cut(s) 237
FaiI YATR 3 cut(s) 36, 99, 235
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 233
FokI GGATG 1 cut(s) 195
HapII CCGG 2 cut(s) 46, 137
Hin1II CATG 1 cut(s) 237
HindIII AAGCTT 2 cut(s) 168, 243
HinfI GANTC 2 cut(s) 62, 271
HpaII CCGG 2 cut(s) 46, 137
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 114, 270
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 259
HpyF3I CTNAG 2 cut(s) 176, 267
Hsp92II CATG 1 cut(s) 237
LpnPI CCDG 2 cut(s) 59, 150
MaeIII GTNAC 2 cut(s) 143, 259
MboII GAAGA 7 cut(s) 127, 130, 133, 200, 203, 241, 244
MmeI TCCRAC 2 cut(s) 82, 236
MseI TTAA 3 cut(s) 11, 204, 277
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 2 cut(s) 46, 137
NlaIII CATG 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 62, 271
SaqAI TTAA 3 cut(s) 11, 204, 277
SetI ASST 2 cut(s) 172, 247
SgeI CNNG 9 cut(s) 43, 58, 143, 149, 160, 166, 179, 228, 246
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SsiI CCGC 1 cut(s) 219
TaaI ACNGT 1 cut(s) 259
TfiI GAWTC 2 cut(s) 62, 271
Tru1I TTAA 3 cut(s) 11, 204, 277
Tru9I TTAA 3 cut(s) 11, 204, 277
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.