AT3G03850

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002411
Physical Location & Seq
Forward (+)
983057 .. 983768
712 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03850.1

Sequence Viewer

Length: 282 bp
ATGGCTTTGGTGAGAAGTCTCTTTAGCGCAAAGAAGATTCTTGGCGGTTCTTTAGTAAAAACAAGCAAGGCACCGCCAAAAGGGTTTCTTGCAGTGTACGTCGGCGAGAGCCAGAAGAAGCAGAGACATTTTGTACCAGTCTCATACTTGAACCAGCCTTTGTTTCAAGATCTTCTAAGCAAATGTGAAGAAGAGTTTGGTTTTGATCATCCGATGGGCGGCTTGACAATCCCTTGTCCTGTAGATACTTTTATCAGTATAACATCTCAGCTCCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_3 NB-ARC TIR

Protein Analysis

93

Amino Acids

10.2

Weight (kDa)

9.03

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 89 1.5e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AciI CCGC 3 cut(s) 45, 74, 219
AfaI GTAC 2 cut(s) 98, 135
AfiI CCNNNNNNNGG 2 cut(s) 80, 218
AgsI TTSAA 2 cut(s) 151, 167
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 23, 118, 145
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 70
BccI CCATC 1 cut(s) 208
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 23, 118, 145
BfmI CTRYAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 218
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 80, 218
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 80, 218
BsmAI GTCTC 3 cut(s) 23, 118, 145
Bsp143I GATC 2 cut(s) 169, 205
BspACI CCGC 3 cut(s) 45, 74, 219
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 2 cut(s) 169, 205
BssT1I CCWWGG 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 176, 267
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 172, 208
BstMAI GTCTC 3 cut(s) 23, 118, 145
BstMBI GATC 2 cut(s) 169, 205
BstSFI CTRYAG 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 97, 134
CviJI RGCY 5 cut(s) 5, 111, 157, 222, 271
CviKI_1 RGCY 5 cut(s) 5, 111, 157, 222, 271
CviQI GTAC 2 cut(s) 97, 134
DdeI CTNAG 2 cut(s) 176, 267
DpnI GATC 2 cut(s) 171, 207
DpnII GATC 2 cut(s) 169, 205
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaiI YATR 2 cut(s) 145, 260
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 220
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 176, 267
HpySE526I ACGT 1 cut(s) 99
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 169, 205
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 4 cut(s) 125, 150, 167, 252
MaeII ACGT 1 cut(s) 99
MalI GATC 2 cut(s) 171, 207
MboI GATC 2 cut(s) 169, 205
MboII GAAGA 5 cut(s) 46, 127, 164, 200, 203
MflI RGATCY 1 cut(s) 169
NdeII GATC 2 cut(s) 169, 205
NlaIV GGNNCC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 72
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 98, 135
RsaNI GTAC 2 cut(s) 97, 134
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 2 cut(s) 169, 205
SetI ASST 2 cut(s) 102, 273
SfcI CTRYAG 1 cut(s) 240
SsiI CCGC 3 cut(s) 45, 74, 219
StyI CCWWGG 1 cut(s) 274
TaiI ACGT 1 cut(s) 102
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 1 cut(s) 99
TspRI CASTG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.