Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002411

Physical Location & Seq

Genomic Coordinates Forward (+)

12191676 .. 12191930

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG159700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGGGTGGTGATGAAGAAGGTGGTGCTGATGAGGATCTGCAGCTTGTGGGCGATGAACATCGACGGCTGCAAGCACACGCCGCTATCACCTATTCTCTCCCACCCACAATCTGGATCCGACCAAGATTTTGATGCTATGGCCACTTTCCGGTCCAGCCCAGCACCGCGACCGCCGCCCATGGCCACTTTTTGGTCCAGCCCAGCACGGCCAAAGGAAATTCTAGAGGTTGTTGATTCGAAGGAAATTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

9.28

Weight (kDa)

7.83

Isoelectric Point (pI)

80.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21200 AT3G03820 AT3G03830 AT3G03840 AT3G03850 AT4G13790 AT4G38825 AT4G38850 AT5G18010 AT5G18020 AT5G18030 AT5G18050 AT5G18060 AT5G18080
fragaria_vesca	FvH4_2g10800
malus_domestica	MD05G1052500.v1.1 MD05G1052800.v1.1
prunus_persica	Prupe.8G081200_v2.0.a1 Prupe.8G081400_v2.0.a1 Prupe.8G081600_v2.0.a1 Prupe.8G081800_v2.0.a1 Prupe.8G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268871 RchiOBHm_Chr6g0268931
rosa_laevigata	RLG00000004110 RLG00000013894
rosa_multiflora	Rmu_sc0000869.1_g000022 Rmu_sc0003073.1_g000028
rosa_roxburghii	Rroxscaffold_1G00023460 Rroxscaffold_1G00023500 Rroxscaffold_7G00199150
rosa_rugosa	Rorug05G0302200 Rorug05G0302300 Rorug05G0302700 Rorug06G0043400
rosa_samantha	Rh7BG159700 Rh7BG381800
rosa_wichuraiana	Rw5G034950 Rw5G035040 Rw6G014090 Rw6G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	113, 192
AccII	CGCG	1 cut(s)	169
AciI	CCGC	4 cut(s)	83, 167, 173, 176
AclWI	GGATC	3 cut(s)	44, 111, 124
AcoI	YGGCCR	3 cut(s)	141, 183, 209
AcsI	RAATTY	2 cut(s)	219, 246
AfiI	CCNNNNNNNGG	3 cut(s)	113, 150, 192
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
AlwI	GGATC	3 cut(s)	44, 111, 124
AoxI	GGCC	3 cut(s)	141, 183, 209
ApeKI	GCWGC	2 cut(s)	42, 69
ApoI	RAATTY	2 cut(s)	219, 246
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspS9I	GGNCC	2 cut(s)	153, 195
AsuHPI	GGTGA	2 cut(s)	22, 81
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	153, 195
BalI	TGGCCA	2 cut(s)	143, 185
BamHI	GGATCC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	54, 56
BceAI	ACGGC	2 cut(s)	82, 224
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	4 cut(s)	43, 70, 83, 176
BlsI	GCNGC	4 cut(s)	44, 71, 84, 177
Bme18I	GGWCC	2 cut(s)	153, 195
BmgT120I	GGNCC	2 cut(s)	153, 195
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	239
BsaBI	GATNNNNATC	2 cut(s)	35, 59
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 150, 192
Bse8I	GATNNNNATC	2 cut(s)	35, 59
BseDI	CCNNGG	1 cut(s)	180
BseJI	GATNNNNATC	2 cut(s)	35, 59
BseLI	CCNNNNNNNGG	3 cut(s)	113, 150, 192
BseXI	GCAGC	2 cut(s)	54, 56
BseYI	CCCAGC	2 cut(s)	160, 202
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	143, 185, 211
BsiEI	CGRYCG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	113, 150, 192
BsnI	GGCC	3 cut(s)	143, 185, 211
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	36, 116
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	4 cut(s)	83, 167, 173, 176
BspANI	GGCC	3 cut(s)	143, 185, 211
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	44
BspPI	GGATC	3 cut(s)	44, 111, 124
BspT104I	TTCGAA	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	36, 116
BssT1I	CCWWGG	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	39, 119
BstMBI	GATC	2 cut(s)	36, 116
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 175
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	54, 56
BstX2I	RGATCY	2 cut(s)	36, 116
BstYI	RGATCY	2 cut(s)	36, 116
BsuRI	GGCC	3 cut(s)	143, 185, 211
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	153, 195
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	7 cut(s)	45, 69, 143, 159, 185, 201, 211
CviKI_1	RGCY	7 cut(s)	45, 69, 143, 159, 185, 201, 211
DpnI	GATC	2 cut(s)	38, 118
DpnII	GATC	2 cut(s)	36, 116
EaeI	YGGCCR	3 cut(s)	141, 183, 209
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	153, 195
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	184
FaiI	YATR	3 cut(s)	140, 182, 253
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	43, 70, 83, 176
Fsp4HI	GCNGC	4 cut(s)	43, 70, 83, 176
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	4 cut(s)	43, 70, 83, 176
GsaI	CCCAGC	2 cut(s)	164, 206
HaeIII	GGCC	3 cut(s)	143, 185, 211
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	2 cut(s)	22, 81
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	114, 224
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	13, 235
HpyCH4V	TGCA	2 cut(s)	42, 72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 175
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	36, 116
LpnPI	CCDG	6 cut(s)	99, 164, 169, 174, 211, 216
Lsp1109I	GCAGC	2 cut(s)	54, 56
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	224
MalI	GATC	2 cut(s)	38, 118
MboI	GATC	2 cut(s)	36, 116
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	2 cut(s)	36, 116
MlsI	TGGCCA	2 cut(s)	143, 185
MluCI	AATT	2 cut(s)	219, 246
MluNI	TGGCCA	2 cut(s)	143, 185
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	2 cut(s)	27, 220
Mox20I	TGGCCA	2 cut(s)	143, 185
MscI	TGGCCA	2 cut(s)	143, 185
Msp20I	TGGCCA	2 cut(s)	143, 185
MspI	CCGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	82, 175
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	36, 116
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	2 cut(s)	113, 192
PkrI	GCNGC	4 cut(s)	44, 71, 84, 177
PspFI	CCCAGC	2 cut(s)	160, 202
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	153, 195
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	36, 116
SatI	GCNGC	4 cut(s)	43, 70, 83, 176
Sau3AI	GATC	2 cut(s)	36, 116
Sau96I	GGNCC	2 cut(s)	153, 195
SetI	ASST	4 cut(s)	24, 47, 94, 231
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	2 cut(s)	153, 195
Sse9I	AATT	2 cut(s)	219, 246
SsiI	CCGC	4 cut(s)	83, 167, 173, 176
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	180
TaqI	TCGA	2 cut(s)	63, 239
TasI	AATT	2 cut(s)	219, 246
TauI	GCSGC	2 cut(s)	85, 178
TfiI	GAWTC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	42, 69
TspDTI	ATGAA	2 cut(s)	29, 71
Van91I	CCANNNNNTGG	2 cut(s)	113, 192
VpaK11BI	GGWCC	2 cut(s)	153, 195
XapI	RAATTY	2 cut(s)	219, 246
XbaI	TCTAGA	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.