Rw6G014090

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002411
Physical Location & Seq
Reverse (-)
26138380 .. 26139207
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014090.1

Sequence Viewer

Length: 309 bp
ATGGCTATTCGAGTACCAGGAATCATGCATGCTAAGCAGATCTTGCGCCAGTCAAGCTTGTTTGCGAACAAGGCGAGTTCAACGTCTTCTATGGGAGTTCCGAAAGGATATGTCGCTGTGTACGTTGGAGAGAGTGAAAGAAAACGATTTGTGGTTCCGATATCCTTTTTGAGACAACCTTTGTTCCAAGAGCTGCTAAGTAAGGCGGAGGAGGAGTTCGGGTACAACTATCCAACAGGCAGACTCACGATTCCTTGCACAGAAGACATCTTCGTTGACCTCACTTCTCGACTGAATAGATTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

9.51

Isoelectric Point (pI)

64.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 97 1.5e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AfaI GTAC 3 cut(s) 15, 122, 224
AgsI TTSAA 1 cut(s) 81
AjnI CCWGG 1 cut(s) 16
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 2 cut(s) 57, 193
AluI AGCT 2 cut(s) 57, 193
Alw26I GTCTC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 193
AseI ATTAAT 1 cut(s) 302
AspLEI GCGC 1 cut(s) 48
BbsI GAAGAC 2 cut(s) 78, 270
BbvI GCAGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 166
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 18
BpiI GAAGAC 2 cut(s) 78, 270
Bpu1102I GCTNAGC 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 200, 206, 230, 236
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 2 cut(s) 224, 227
BseXI GCAGC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 33, 197
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 34, 43, 54, 71
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 78, 270
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 3 cut(s) 14, 121, 223
CviAII CATG 2 cut(s) 25, 29
CviJI RGCY 3 cut(s) 5, 57, 193
CviKI_1 RGCY 3 cut(s) 5, 57, 193
CviQI GTAC 3 cut(s) 14, 121, 223
DdeI CTNAG 2 cut(s) 33, 197
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EciI GGCGGA 1 cut(s) 221
Eco32I GATATC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 30
FaeI CATG 2 cut(s) 28, 32
FaiI YATR 4 cut(s) 26, 30, 92, 111
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 2 cut(s) 24, 28
Fnu4HI GCNGC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 194
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 28, 32
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 3 cut(s) 21, 243, 250
Hpy166II GTNNAC 2 cut(s) 121, 277
Hpy188I TCNGA 2 cut(s) 102, 159
Hpy188III TCNNGA 2 cut(s) 247, 288
Hpy8I GTNNAC 2 cut(s) 121, 277
HpyCH4IV ACGT 2 cut(s) 83, 123
HpyCH4V TGCA 2 cut(s) 28, 258
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 43, 54, 71
HpyF3I CTNAG 2 cut(s) 33, 197
HpySE526I ACGT 2 cut(s) 83, 123
Hsp92II CATG 2 cut(s) 28, 32
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 3, 30, 62, 222
Lsp1109I GCAGC 1 cut(s) 180
MaeII ACGT 2 cut(s) 83, 123
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 78, 262, 275
MflI RGATCY 1 cut(s) 39
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 2 cut(s) 106, 257
MnlI CCTC 3 cut(s) 202, 205, 290
Mph1103I ATGCAT 1 cut(s) 30
MseI TTAA 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 34, 43, 54, 71
NdeII GATC 1 cut(s) 39
NlaIII CATG 2 cut(s) 28, 32
NlaIV GGNNCC 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 2 cut(s) 21, 250
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 3 cut(s) 15, 122, 224
RsaNI GTAC 3 cut(s) 14, 121, 223
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 18
SetI ASST 6 cut(s) 59, 86, 126, 181, 195, 282
SphI GCATGC 1 cut(s) 32
SsiI CCGC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 16
TaiI ACGT 2 cut(s) 86, 126
TaqI TCGA 2 cut(s) 10, 289
TfiI GAWTC 2 cut(s) 21, 250
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseI GCWGC 1 cut(s) 193
VspI ATTAAT 1 cut(s) 302
XceI RCATGY 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.