AT5G18020

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002411
Physical Location & Seq
Reverse (-)
5966183 .. 5966785
603 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18020.1

Sequence Viewer

Length: 276 bp
ATGGCTTTTGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCACAGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGTGAGAGCCAAAAGAAGAGATATCTGGTGCCAATCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCCTGTCCTGAAGATACATTCATCAATGTGACTTCTCGGTTCCAACGATGA

Protein Analysis

91

Amino Acids

10.04

Weight (kDa)

9.52

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 87 1.9e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 70, 127
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 48
AciI CCGC 2 cut(s) 46, 68
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AlwI GGATC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 113
BanI GGYRCC 2 cut(s) 70, 127
BbvI GCAGC 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 3 cut(s) 46, 60, 69
BlsI GCNGC 3 cut(s) 47, 61, 70
BmiI GGNNCC 3 cut(s) 72, 129, 266
BsaAI YACGTR 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 63, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 63, 180
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 71
BshNI GGYRCC 2 cut(s) 70, 127
BslI CCNNNNNNNGG 1 cut(s) 212
Bsp143I GATC 2 cut(s) 199, 222
BspACI CCGC 2 cut(s) 46, 68
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 3 cut(s) 72, 129, 266
BspPI GGATC 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 171
BspT107I GGYRCC 2 cut(s) 70, 127
BsrBI CCGCTC 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 63, 180
BssMI GATC 2 cut(s) 199, 222
Bst6I CTCTTC 3 cut(s) 110, 171, 180
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 41, 170
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 2 cut(s) 202, 225
BstMBI GATC 2 cut(s) 199, 222
BstMWI GCNNNNNNNGC 2 cut(s) 65, 68
BstSNI TACGTA 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 7 cut(s) 5, 45, 62, 108, 151, 164, 216
CviKI_1 RGCY 7 cut(s) 5, 45, 62, 108, 151, 164, 216
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 41, 170
DpnI GATC 2 cut(s) 201, 224
DpnII GATC 2 cut(s) 199, 222
DraI TTTAAA 1 cut(s) 144
Eam1104I CTCTTC 3 cut(s) 110, 171, 180
EarI CTCTTC 3 cut(s) 110, 171, 180
Eco105I TACGTA 1 cut(s) 97
Eco32I GATATC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 122
FaiI YATR 1 cut(s) 139
FalI AAGNNNNNCTT 2 cut(s) 69, 101
Fnu4HI GCNGC 3 cut(s) 46, 60, 69
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 46, 60, 69
GluI GCNGC 3 cut(s) 46, 60, 69
HinfI GANTC 2 cut(s) 37, 195
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 68
HpyF3I CTNAG 2 cut(s) 41, 170
HpySE526I ACGT 1 cut(s) 96
Kzo9I GATC 2 cut(s) 199, 222
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 26, 53
LpnPI CCDG 4 cut(s) 110, 161, 241, 246
Lsp1109I GCAGC 1 cut(s) 71
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 201, 224
MbiI CCGCTC 1 cut(s) 48
MboI GATC 2 cut(s) 199, 222
MboII GAAGA 5 cut(s) 46, 127, 158, 197, 248
MnlI CCTC 2 cut(s) 73, 175
MseI TTAA 2 cut(s) 143, 218
MslI CAYNNNNRTG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 65, 68
NdeII GATC 2 cut(s) 199, 222
NlaIV GGNNCC 3 cut(s) 72, 129, 266
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PfeI GAWTC 2 cut(s) 37, 195
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 3 cut(s) 47, 61, 70
Ppu21I YACGTR 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 72, 129, 266
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 143, 218
SatI GCNGC 3 cut(s) 46, 60, 69
Sau3AI GATC 2 cut(s) 199, 222
SetI ASST 3 cut(s) 99, 103, 166
SgeI CNNG 8 cut(s) 76, 98, 137, 160, 173, 193, 240, 245
SmiMI CAYNNNNRTG 1 cut(s) 251
SnaBI TACGTA 1 cut(s) 97
SsiI CCGC 2 cut(s) 46, 68
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 198
TauI GCSGC 2 cut(s) 48, 71
TfiI GAWTC 2 cut(s) 37, 195
Tru1I TTAA 2 cut(s) 143, 218
Tru9I TTAA 2 cut(s) 143, 218
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 144, 235
TspRI CASTG 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.