AT5G18060

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002411
Physical Location & Seq
Forward (+)
5975780 .. 5976589
810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18060.1

Sequence Viewer

Length: 273 bp
ATGGCTTTGGTGAGAAGTCTATTGGTTGCAAAGAAGATTCTTAGCCGCTCCGCCGCAGCAGTCTCGGCGCCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGAGATATTTAGTGCCACTCTCATACTTGAACCAGCCTTCTTTTCAAGCTCTGCTCAGTAAATCCGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAAGATACTTTCATCAATGTGACTTCTCGGCTCCATTGA

Protein Analysis

90

Amino Acids

9.86

Weight (kDa)

9.25

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 88 3.5e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 48
AciI CCGC 3 cut(s) 46, 51, 54
AclWI GGATC 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 77, 212
AgsI TTSAA 2 cut(s) 145, 161
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BcoDI GTCTC 1 cut(s) 67
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 3 cut(s) 46, 54, 57
BlsI GCNGC 3 cut(s) 47, 55, 58
BmiI GGNNCC 2 cut(s) 69, 266
BsaAI YACGTR 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 212
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 77, 212
BseMII CTCAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 77, 212
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 199, 222
BspACI CCGC 3 cut(s) 46, 51, 54
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 69, 266
BspPI GGATC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 67
BsrBI CCGCTC 1 cut(s) 48
BssMI GATC 2 cut(s) 199, 222
BssNI GRCGYC 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 110, 180
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 41, 170
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 2 cut(s) 202, 225
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 199, 222
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
CfoI GCGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 7 cut(s) 5, 45, 108, 151, 164, 216, 265
CviKI_1 RGCY 7 cut(s) 5, 45, 108, 151, 164, 216, 265
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 41, 170
DinI GGCGCC 1 cut(s) 69
DpnI GATC 2 cut(s) 201, 224
DpnII GATC 2 cut(s) 199, 222
Eam1104I CTCTTC 2 cut(s) 110, 180
EarI CTCTTC 2 cut(s) 110, 180
EciI GGCGGA 1 cut(s) 40
Eco105I TACGTA 1 cut(s) 97
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
FaiI YATR 1 cut(s) 139
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 46, 54, 57
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 46, 54, 57
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 46, 54, 57
HaeII RGCGCY 1 cut(s) 71
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 181, 207
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 29, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 41, 170
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 68
HspAI GCGC 1 cut(s) 68
KasI GGCGCC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 199, 222
LmnI GCTCC 2 cut(s) 53, 270
LpnPI CCDG 2 cut(s) 122, 161
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 201, 224
MbiI CCGCTC 1 cut(s) 48
MboI GATC 2 cut(s) 199, 222
MboII GAAGA 6 cut(s) 46, 124, 127, 194, 197, 248
Mly113I GGCGCC 1 cut(s) 68
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 65
NarI GGCGCC 1 cut(s) 68
NdeII GATC 2 cut(s) 199, 222
NlaIV GGNNCC 2 cut(s) 69, 266
NmeAIII GCCGAG 2 cut(s) 44, 241
NmuCI GTSAC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 3 cut(s) 47, 55, 58
PluTI GGCGCC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 69, 266
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 3 cut(s) 46, 54, 57
Sau3AI GATC 2 cut(s) 199, 222
SetI ASST 2 cut(s) 99, 166
SfoI GGCGCC 1 cut(s) 69
SgeI CNNG 8 cut(s) 76, 98, 121, 154, 160, 173, 240, 245
SmiMI CAYNNNNRTG 1 cut(s) 251
SnaBI TACGTA 1 cut(s) 97
SsiI CCGC 3 cut(s) 46, 51, 54
SspDI GGCGCC 1 cut(s) 67
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 198
TauI GCSGC 2 cut(s) 48, 56
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 235
TspRI CASTG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.