AT5G18080

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002411
Physical Location & Seq
Forward (+)
5983683 .. 5984308
626 bp
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UTR
Exon/CDS
Intron
AT5G18080.1

Sequence Viewer

Length: 273 bp
ATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGGAGCAGGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGATATTTGGTGCCTGTCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCCGAAGAAGAGTTTGGATTTGATCATCCGATGGGAGGCTTAACGATCCCTTGTCCCGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGA

Protein Analysis

90

Amino Acids

9.78

Weight (kDa)

9.25

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 88 1.1e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 70, 127
AccBSI CCGCTC 1 cut(s) 48
AciI CCGC 3 cut(s) 46, 68, 89
AclWI GGATC 2 cut(s) 70, 217
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 161
AjuI GAANNNNNNNTTGG 4 cut(s) 107, 139, 174, 206
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 2 cut(s) 70, 217
AlwNI CAGNNNCTG 1 cut(s) 65
BanI GGYRCC 2 cut(s) 70, 127
BccI CCATC 1 cut(s) 202
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 2 cut(s) 46, 69
BlsI GCNGC 2 cut(s) 47, 70
BmiI GGNNCC 3 cut(s) 72, 129, 266
BsaAI YACGTR 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 184
BshNI GGYRCC 2 cut(s) 70, 127
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 62, 199, 222
BspACI CCGC 3 cut(s) 46, 68, 89
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 3 cut(s) 72, 129, 266
BspPI GGATC 2 cut(s) 70, 217
BspQI GCTCTTC 1 cut(s) 171
BspT107I GGYRCC 2 cut(s) 70, 127
BsrBI CCGCTC 1 cut(s) 48
BssMI GATC 3 cut(s) 62, 199, 222
Bst6I CTCTTC 3 cut(s) 110, 171, 180
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 41, 170
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 3 cut(s) 65, 202, 225
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 3 cut(s) 62, 199, 222
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BtsCI GGATG 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 65
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 7 cut(s) 5, 45, 108, 151, 164, 216, 265
CviKI_1 RGCY 7 cut(s) 5, 45, 108, 151, 164, 216, 265
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 41, 170
DpnI GATC 3 cut(s) 64, 201, 224
DpnII GATC 3 cut(s) 62, 199, 222
DraI TTTAAA 1 cut(s) 144
Eam1104I CTCTTC 3 cut(s) 110, 171, 180
EarI CTCTTC 3 cut(s) 110, 171, 180
Eco105I TACGTA 1 cut(s) 97
FaiI YATR 1 cut(s) 139
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 216
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 46, 69
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 2 cut(s) 46, 69
GluI GCNGC 2 cut(s) 46, 69
HapII CCGG 1 cut(s) 54
HinfI GANTC 1 cut(s) 37
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 181, 207
Hpy188III TCNNGA 2 cut(s) 10, 233
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 162, 253
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 41, 170
HpySE526I ACGT 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 62, 199, 222
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 4 cut(s) 26, 53, 56, 270
LpnPI CCDG 5 cut(s) 45, 67, 122, 144, 161
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 64, 201, 224
MbiI CCGCTC 1 cut(s) 48
MboI GATC 3 cut(s) 62, 199, 222
MboII GAAGA 7 cut(s) 46, 124, 127, 158, 194, 197, 248
MflI RGATCY 1 cut(s) 62
MnlI CCTC 1 cut(s) 206
MseI TTAA 2 cut(s) 143, 218
MslI CAYNNNNRTG 1 cut(s) 251
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 3 cut(s) 62, 199, 222
NlaIV GGNNCC 3 cut(s) 72, 129, 266
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 47, 70
Ppu21I YACGTR 1 cut(s) 97
PspN4I GGNNCC 3 cut(s) 72, 129, 266
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 143, 218
SatI GCNGC 2 cut(s) 46, 69
Sau3AI GATC 3 cut(s) 62, 199, 222
SetI ASST 3 cut(s) 99, 166, 245
SmiMI CAYNNNNRTG 1 cut(s) 251
SnaBI TACGTA 1 cut(s) 97
SsiI CCGC 3 cut(s) 46, 68, 89
TaiI ACGT 1 cut(s) 99
TauI GCSGC 2 cut(s) 48, 71
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 2 cut(s) 143, 218
Tru9I TTAA 2 cut(s) 143, 218
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 144, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.