Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002411

Physical Location & Seq

Genomic Coordinates Forward (+)

11473808 .. 11474113

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G081200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTATCAGATTGCCTAGTATTATGCAAGCAAAGCAGATCCTCTGCCGGGGGAGTTTGTTTGCTAACCGCGCAGCTTCAACATCTTTAGTAGGTGTTCCAAAAGGCTTCTTCGCAGTGTATGTTGGAGAGAATGAAAAAAAGAGATACATGGTTCCAATTTCATTATTGAGTCAGCCTTCATTTCAAGAGTCGTTAAGTAAGGCAGAGGAAGAATTTGGATTTGACCATCCAATGGGTGGACTCACAATTCCTTGCAGAGAAGAAATCTTCGTTGATCTCACTTCTCGGTTGTATGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

7.78

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21200 AT3G03820 AT3G03830 AT3G03840 AT3G03850 AT4G13790 AT4G38825 AT4G38850 AT5G18010 AT5G18020 AT5G18030 AT5G18050 AT5G18060 AT5G18080
fragaria_vesca	FvH4_2g10800
malus_domestica	MD05G1052500.v1.1 MD05G1052800.v1.1
prunus_persica	Prupe.8G081200_v2.0.a1 Prupe.8G081400_v2.0.a1 Prupe.8G081600_v2.0.a1 Prupe.8G081800_v2.0.a1 Prupe.8G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268871 RchiOBHm_Chr6g0268931
rosa_laevigata	RLG00000004110 RLG00000013894
rosa_multiflora	Rmu_sc0000869.1_g000022 Rmu_sc0003073.1_g000028
rosa_roxburghii	Rroxscaffold_1G00023460 Rroxscaffold_1G00023500 Rroxscaffold_7G00199150
rosa_rugosa	Rorug05G0302200 Rorug05G0302300 Rorug05G0302700 Rorug06G0043400
rosa_samantha	Rh7BG159700 Rh7BG381800
rosa_wichuraiana	Rw5G034950 Rw5G035040 Rw6G014090 Rw6G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	235, 239
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	3 cut(s)	49, 235, 239
AgsI	TTSAA	2 cut(s)	81, 188
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 235, 239
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	49, 235, 239
BseXI	GCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	3 cut(s)	49, 235, 239
Bsp143I	GATC	2 cut(s)	39, 277
BspACI	CCGC	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	39, 277
BstC8I	GCNNGC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	42, 280
BstMBI	GATC	2 cut(s)	39, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 71
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	74
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	5 cut(s)	5, 77, 108, 178, 300
CviKI_1	RGCY	5 cut(s)	5, 77, 108, 178, 300
DpnI	GATC	2 cut(s)	41, 279
DpnII	GATC	2 cut(s)	39, 277
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	26, 123, 152, 297
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	75
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	172, 191, 243
HpaII	CCGG	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	28, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 71
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	39, 277
LpnPI	CCDG	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	18
MalI	GATC	2 cut(s)	41, 279
MboI	GATC	2 cut(s)	39, 277
MboII	GAAGA	4 cut(s)	103, 224, 262, 275
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	3 cut(s)	159, 215, 249
MlyI	GAGTC	3 cut(s)	181, 200, 237
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	53, 202
MseI	TTAA	1 cut(s)	197
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	34, 71
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	39, 277
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	156
PflMI	CCANNNNNTGG	2 cut(s)	235, 239
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	3 cut(s)	180, 199, 237
PpsI	GAGTC	3 cut(s)	180, 199, 237
PspN4I	GGNNCC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	39, 277
SchI	GAGTC	3 cut(s)	181, 200, 237
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	2 cut(s)	79, 97
SgeI	CNNG	9 cut(s)	30, 41, 61, 62, 83, 163, 200, 267, 300
Sse9I	AATT	3 cut(s)	159, 215, 249
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	48
TasI	AATT	3 cut(s)	159, 215, 249
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	150, 153, 171
TspRI	CASTG	1 cut(s)	123
Van91I	CCANNNNNTGG	2 cut(s)	235, 239
XapI	RAATTY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.