AT3G03830

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002411
Physical Location & Seq
Reverse (-)
979976 .. 980562
587 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03830.1

Sequence Viewer

Length: 279 bp
ATGGCTTTGGTGAGAAGTATCTTCAGTGCAAAGAAGATTCTTGGCGGCTCCTTAGCAAGAACGAGCAAAGCACCAAAAGGTTTTCTTGCGGTGTACGTCGGTGAGAACCAAGAGAAGAAGCAGAGATACTTTGTACCAGTCTCATACTTGAAGCAGCCTTCATTTCAGGCCCTTCTCAGTAAATGCGAAGAAGAGTTTGGTTTTGATCATCCAATGGGCGGCTTGACAATTTGTTGTCCTGAATACACATTTATCAGCATAACTTCTAGGATCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

92

Amino Acids

10.28

Weight (kDa)

9.3

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 90 3.4e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 45, 89, 219
AclWI GGATC 2 cut(s) 265, 278
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 2 cut(s) 95, 135
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 2 cut(s) 265, 278
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 22, 113
BamHI GGATCC 1 cut(s) 270
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BbvI GCAGC 1 cut(s) 166
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 267
BisI GCNGC 3 cut(s) 46, 155, 220
BlsI GCNGC 3 cut(s) 47, 156, 221
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 49, 272
Bpu10I CCTNAGC 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 166
BshFI GGCC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 205, 270
BspACI CCGC 3 cut(s) 45, 89, 219
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 49, 272
BspPI GGATC 2 cut(s) 265, 278
BsrI ACTGG 1 cut(s) 137
BssMI GATC 2 cut(s) 205, 270
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 52, 176
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 2 cut(s) 208, 273
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 205, 270
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 94, 134
CviJI RGCY 5 cut(s) 5, 48, 157, 170, 222
CviKI_1 RGCY 5 cut(s) 5, 48, 157, 170, 222
CviQI GTAC 2 cut(s) 94, 134
DdeI CTNAG 2 cut(s) 52, 176
DpnI GATC 2 cut(s) 207, 272
DpnII GATC 2 cut(s) 205, 270
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 169
FaiI YATR 2 cut(s) 145, 260
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 46, 155, 220
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 46, 155, 220
FspBI CTAG 1 cut(s) 267
GluI GCNGC 3 cut(s) 46, 155, 220
HaeIII GGCC 1 cut(s) 170
HinfI GANTC 1 cut(s) 37
HphI GGTGA 2 cut(s) 22, 113
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 168, 182
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 52, 176
HpySE526I ACGT 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 205, 270
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 150, 152, 252
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 96
MalI GATC 2 cut(s) 207, 272
MboI GATC 2 cut(s) 205, 270
MboII GAAGA 5 cut(s) 13, 46, 127, 200, 203
MflI RGATCY 1 cut(s) 270
MluCI AATT 1 cut(s) 228
NdeII GATC 2 cut(s) 205, 270
NlaIV GGNNCC 2 cut(s) 49, 272
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 3 cut(s) 47, 156, 221
PspN4I GGNNCC 2 cut(s) 49, 272
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 2 cut(s) 95, 135
RsaNI GTAC 2 cut(s) 94, 134
SatI GCNGC 3 cut(s) 46, 155, 220
Sau3AI GATC 2 cut(s) 205, 270
Sau96I GGNCC 1 cut(s) 169
SetI ASST 2 cut(s) 82, 99
Sse9I AATT 1 cut(s) 228
SsiI CCGC 3 cut(s) 45, 89, 219
SspMI CTAG 1 cut(s) 267
TaiI ACGT 1 cut(s) 99
TasI AATT 1 cut(s) 228
TauI GCSGC 2 cut(s) 48, 222
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 31
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.