AT4G38850

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002411
Physical Location & Seq
Forward (+)
18126057 .. 18126829
773 bp
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UTR
Exon/CDS
Intron
AT4G38850.1

Sequence Viewer

Length: 270 bp
ATGGCTTTTTTGAGGAGTTTCTTGGGTGCTAAGCAAATTATTCGAAGGGAATCATCGTCGACACCAAGAGGATTCATGGCGGTCTATGTAGGAGAGAATGATCAGAAGAAGAAGAGATATGTGGTGCCGGTTTCATACTTAAACCAGCCTTTGTTTCAACAACTGTTGAGTAAATCTGAGGAAGAGTTTGGTTATGATCATCCAATGGGCGGCTTAACAATACCATGTCATGAATCTTTGTTCTTCACAGTCACATCTCAGATACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

89

Amino Acids

10.21

Weight (kDa)

8.85

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 86 4.1e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 59
AciI CCGC 2 cut(s) 80, 210
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BclI TGATCA 2 cut(s) 100, 196
BisI GCNGC 1 cut(s) 211
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 127
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 43
Bsp143I GATC 2 cut(s) 100, 196
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 2 cut(s) 80, 210
BspCNI CTCAG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssMI GATC 2 cut(s) 100, 196
Bst4CI ACNGT 2 cut(s) 165, 250
Bst6I CTCTTC 2 cut(s) 107, 177
BstBI TTCGAA 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 30, 177, 258
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 103, 199
BstMBI GATC 2 cut(s) 100, 196
BtsCI GGATG 1 cut(s) 199
CciI TCATGA 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 127
CviAII CATG 3 cut(s) 76, 225, 230
CviJI RGCY 3 cut(s) 5, 148, 213
CviKI_1 RGCY 3 cut(s) 5, 148, 213
DdeI CTNAG 3 cut(s) 30, 177, 258
DpnI GATC 2 cut(s) 102, 198
DpnII GATC 2 cut(s) 100, 196
Eam1104I CTCTTC 2 cut(s) 107, 177
EarI CTCTTC 2 cut(s) 107, 177
FaeI CATG 3 cut(s) 79, 228, 233
FaiI YATR 7 cut(s) 77, 87, 120, 136, 195, 226, 231
FatI CATG 3 cut(s) 75, 224, 229
FbaI TGATCA 2 cut(s) 100, 196
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 211
HapII CCGG 1 cut(s) 128
Hin1II CATG 3 cut(s) 79, 228, 233
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 3 cut(s) 50, 72, 233
HpaII CCGG 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 3 cut(s) 105, 178, 261
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 2 cut(s) 165, 250
HpyF3I CTNAG 3 cut(s) 30, 177, 258
Hsp92II CATG 3 cut(s) 79, 228, 233
Ksp22I TGATCA 2 cut(s) 100, 196
Kzo9I GATC 2 cut(s) 100, 196
LpnPI CCDG 2 cut(s) 141, 158
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 102, 198
MboI GATC 2 cut(s) 100, 196
MboII GAAGA 5 cut(s) 118, 121, 124, 194, 235
MluCI AATT 1 cut(s) 36
MnlI CCTC 3 cut(s) 6, 62, 172
MseI TTAA 2 cut(s) 140, 215
MspI CCGG 1 cut(s) 128
NdeII GATC 2 cut(s) 100, 196
NlaIII CATG 3 cut(s) 79, 228, 233
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 250
NspV TTCGAA 1 cut(s) 43
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 3 cut(s) 50, 72, 233
PkrI GCNGC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 126
SalI GTCGAC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 140, 215
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 2 cut(s) 100, 196
SfuI TTCGAA 1 cut(s) 43
SgeI CNNG 7 cut(s) 34, 78, 88, 140, 157, 237, 242
Sse9I AATT 1 cut(s) 36
SsiI CCGC 2 cut(s) 80, 210
TaaI ACNGT 2 cut(s) 165, 250
TaqI TCGA 2 cut(s) 43, 59
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 3 cut(s) 50, 72, 233
Tru1I TTAA 2 cut(s) 140, 215
Tru9I TTAA 2 cut(s) 140, 215
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 64, 123, 246
XmiI GTMKAC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.