MD05G1052500.v1.1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002411
Physical Location & Seq
Forward (+)
9013301 .. 9013531
231 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1052500.v1.1.491

Sequence Viewer

Length: 231 bp
ATGTTCTCTCTAAGTGTTCCAAAAGGCTTCTTTGCAGTGCATGTCGGAGAGAGCAAAAAGAAGAGATACATGGTTCCAATTTCATTCTTGAGTCGGCCTTCTTTTCAAGATTTGCTAAGTAAAGCAGAGGAAGAATTTGGATATGACCATCCAATGGGTGGACTCACGATTCCTTGCAGAGAAGAAATATTCCTTGATCTCGCTTCTCCGTTAAACGACATGGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

77

Amino Acids

8.62

Weight (kDa)

5.83

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 5 - 68 3.8e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 154, 158
AcsI RAATTY 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 154, 158
AgsI TTSAA 1 cut(s) 107
AoxI GGCC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 134
BccI CCATC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 158
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 154, 158
BshFI GGCC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 154, 158
BsnI GGCC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 75
BssMI GATC 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 11, 116
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
CviAII CATG 3 cut(s) 41, 70, 220
CviJI RGCY 2 cut(s) 27, 97
CviKI_1 RGCY 2 cut(s) 27, 97
DdeI CTNAG 2 cut(s) 11, 116
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
FaeI CATG 3 cut(s) 44, 73, 223
FaiI YATR 4 cut(s) 42, 71, 144, 221
FatI CATG 3 cut(s) 40, 69, 219
FokI GGATG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 3 cut(s) 44, 73, 223
HinfI GANTC 3 cut(s) 91, 162, 169
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 88, 107, 166
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 35, 40, 177
HpyF3I CTNAG 2 cut(s) 11, 116
Hsp92II CATG 3 cut(s) 44, 73, 223
Kzo9I GATC 1 cut(s) 196
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 73, 143, 194
MluCI AATT 2 cut(s) 78, 134
MlyI GAGTC 2 cut(s) 100, 156
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 1 cut(s) 121
MseI TTAA 1 cut(s) 212
NdeII GATC 1 cut(s) 196
NlaIII CATG 3 cut(s) 44, 73, 223
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 44
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 2 cut(s) 154, 158
PleI GAGTC 2 cut(s) 99, 156
PpsI GAGTC 2 cut(s) 99, 156
PspN4I GGNNCC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 2 cut(s) 100, 156
SgeI CNNG 8 cut(s) 53, 82, 100, 119, 178, 186, 206, 212
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 2 cut(s) 78, 134
SspI AATATT 1 cut(s) 189
TasI AATT 2 cut(s) 78, 134
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 72, 215
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 2 cut(s) 154, 158
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.