RLG00000004110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002411
Physical Location & Seq
Forward (+)
56295962 .. 56296770
809 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004110

Sequence Viewer

Length: 429 bp
ATGGAACTGCCGCCCATGTCCTCTTGGAGGTCAGTGGAAGACATGGGCGACGGCGGCAGTGCTGGGCTAGATCGAAAAAGAGAGGAAGAAAGGAGAATGGGTTTGACTGTGATGGAAATTGTTCAAGGACGAGGGGTTGATAAAGTTGTTAGGGTGGAAACTGGAATCATGGTGCGAGGAATGATGGTCGAAGATGGGGGTGGCGATGCAGGAGGTGGTGCTGATGAGGATCTGCAGCTCATGTCCTCTCCCACCCACAACCTGGATCCGACAAGGATTTTGATGCAGTGGCCACTTTTCGGTCCAGCCCAGAACCACCACCGCAGCCCATGTTCTTCCATGGACACTTTTCAGTCCAACCCAGCACCGCGGCCACCTCCCATGGCCACTTTTCGGTCCAGCCCAGCACCGCCGTTGCATTCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.45

Weight (kDa)

5.29

Isoelectric Point (pI)

75.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AccII CGCG 1 cut(s) 370
AciI CCGC 6 cut(s) 11, 54, 322, 368, 370, 410
AclWI GGATC 3 cut(s) 237, 260, 273
AcoI YGGCCR 3 cut(s) 290, 371, 384
AfiI CCNNNNNNNGG 4 cut(s) 27, 262, 299, 393
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AlwI GGATC 3 cut(s) 237, 260, 273
AoxI GGCC 3 cut(s) 290, 371, 384
ApeKI GCWGC 2 cut(s) 235, 324
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 302, 396
AvaII GGWCC 2 cut(s) 302, 396
BalI TGGCCA 2 cut(s) 292, 386
BamHI GGATCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 247, 336
BccI CCATC 3 cut(s) 106, 178, 188
BceAI ACGGC 2 cut(s) 67, 397
BciT130I CCWGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 5 cut(s) 11, 55, 236, 325, 371
BlsI GCNGC 5 cut(s) 12, 56, 237, 326, 372
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 2 cut(s) 302, 396
BmgT120I GGNCC 2 cut(s) 302, 396
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 196, 273
BpiI GAAGAC 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 339, 368, 381
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 262, 299, 393
Bse1I ACTGG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 3 cut(s) 339, 368, 381
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 4 cut(s) 27, 262, 299, 393
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 247, 336
BseYI CCCAGC 3 cut(s) 62, 361, 403
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 3 cut(s) 292, 373, 386
BslI CCNNNNNNNGG 4 cut(s) 27, 262, 299, 393
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 3 cut(s) 292, 373, 386
Bsp143I GATC 3 cut(s) 70, 229, 265
Bsp19I CCATGG 2 cut(s) 339, 381
BspACI CCGC 6 cut(s) 11, 54, 322, 368, 370, 410
BspANI GGCC 3 cut(s) 292, 373, 386
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 237
BspPI GGATC 3 cut(s) 237, 260, 273
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 339, 368, 381
BssMI GATC 3 cut(s) 70, 229, 265
BssT1I CCWWGG 2 cut(s) 339, 381
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 109, 426
BstDSI CCRYGG 3 cut(s) 339, 368, 381
BstENI CCTNNNNNAGG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 370
BstKTI GATC 3 cut(s) 73, 232, 268
BstMBI GATC 3 cut(s) 70, 229, 265
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 233
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 247, 336
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 229, 265
BstYI RGATCY 2 cut(s) 229, 265
BsuRI GGCC 3 cut(s) 292, 373, 386
BtgI CCRYGG 3 cut(s) 339, 368, 381
BtgZI GCGATG 1 cut(s) 219
BtsI GCAGTG 2 cut(s) 64, 293
BtsIMutI CAGTG 4 cut(s) 39, 64, 293, 422
Cfr13I GGNCC 2 cut(s) 302, 396
Cfr42I CCGCGG 1 cut(s) 371
CviAII CATG 7 cut(s) 16, 43, 169, 241, 330, 340, 382
CviJI RGCY 8 cut(s) 67, 238, 292, 308, 327, 373, 386, 402
CviKI_1 RGCY 8 cut(s) 67, 238, 292, 308, 327, 373, 386, 402
DpnI GATC 3 cut(s) 72, 231, 267
DpnII GATC 3 cut(s) 70, 229, 265
EaeI YGGCCR 3 cut(s) 290, 371, 384
Eco130I CCWWGG 2 cut(s) 339, 381
Eco47I GGWCC 2 cut(s) 302, 396
EcoNI CCTNNNNNAGG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 339, 381
ErhI CCWWGG 2 cut(s) 339, 381
FaeI CATG 7 cut(s) 19, 46, 172, 244, 333, 343, 385
FaiI YATR 7 cut(s) 17, 44, 170, 242, 331, 341, 383
FatI CATG 7 cut(s) 15, 42, 168, 240, 329, 339, 381
Fnu4HI GCNGC 5 cut(s) 11, 55, 236, 325, 371
Fsp4HI GCNGC 5 cut(s) 11, 55, 236, 325, 371
FspBI CTAG 1 cut(s) 68
GluI GCNGC 5 cut(s) 11, 55, 236, 325, 371
GsaI CCCAGC 3 cut(s) 66, 365, 407
HaeIII GGCC 3 cut(s) 292, 373, 386
Hin1II CATG 7 cut(s) 19, 46, 172, 244, 333, 343, 385
HinfI GANTC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 270
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 109, 426
HpyCH4V TGCA 4 cut(s) 209, 235, 286, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92II CATG 7 cut(s) 19, 46, 172, 244, 333, 343, 385
KspI CCGCGG 1 cut(s) 371
Kzo9I GATC 3 cut(s) 70, 229, 265
Lsp1109I GCAGC 2 cut(s) 247, 336
LweI GCATC 2 cut(s) 196, 273
MaeI CTAG 1 cut(s) 68
MalI GATC 3 cut(s) 72, 231, 267
MboI GATC 3 cut(s) 70, 229, 265
MboII GAAGA 4 cut(s) 50, 98, 203, 327
MflI RGATCY 2 cut(s) 229, 265
MlsI TGGCCA 2 cut(s) 292, 386
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 2 cut(s) 292, 386
MmeI TCCRAC 2 cut(s) 293, 381
MnlI CCTC 9 cut(s) 21, 31, 76, 125, 170, 206, 220, 256, 387
Mox20I TGGCCA 2 cut(s) 292, 386
MroXI GAANNNNTTC 1 cut(s) 120
MscI TGGCCA 2 cut(s) 292, 386
Msp20I TGGCCA 2 cut(s) 292, 386
MspA1I CMGCKG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 54
NcoI CCATGG 2 cut(s) 339, 381
NdeII GATC 3 cut(s) 70, 229, 265
NlaIII CATG 7 cut(s) 19, 46, 172, 244, 333, 343, 385
NlaIV GGNNCC 1 cut(s) 267
PctI GAATGC 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 5 cut(s) 12, 56, 237, 326, 372
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 3 cut(s) 62, 361, 403
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 302, 396
PstI CTGCAG 1 cut(s) 237
PsuI RGATCY 2 cut(s) 229, 265
SacII CCGCGG 1 cut(s) 371
SatI GCNGC 5 cut(s) 11, 55, 236, 325, 371
Sau3AI GATC 3 cut(s) 70, 229, 265
Sau96I GGNCC 2 cut(s) 302, 396
ScrFI CCNGG 1 cut(s) 263
SetI ASST 5 cut(s) 32, 217, 240, 264, 379
SfaNI GCATC 2 cut(s) 196, 273
SfcI CTRYAG 1 cut(s) 233
Sfr303I CCGCGG 1 cut(s) 371
SgrBI CCGCGG 1 cut(s) 371
SinI GGWCC 2 cut(s) 302, 396
Sse9I AATT 1 cut(s) 117
SsiI CCGC 6 cut(s) 11, 54, 322, 368, 370, 410
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 339, 381
TaaI ACNGT 2 cut(s) 109, 426
TaqI TCGA 2 cut(s) 73, 189
TaqII GACCGA 2 cut(s) 290, 384
TasI AATT 1 cut(s) 117
TauI GCSGC 3 cut(s) 13, 57, 373
TfiI GAWTC 1 cut(s) 165
TscAI CASTG 4 cut(s) 39, 64, 293, 429
TseI GCWGC 2 cut(s) 235, 324
TspRI CASTG 4 cut(s) 39, 64, 293, 429
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 302, 396
XagI CCTNNNNNAGG 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.