MD05G1052800.v1.1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002411
Physical Location & Seq
Forward (+)
9024586 .. 9024882
297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1052800.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGCCATTCGATTACCACAAATACTACGACAATCGAGTTTATTGTTTGCAAACAAAGCAGCTTCATCGTCGCCGTCTTCTGTTGGTGTTCCAAAAGGCTACATGGTAGTGTATGTCGGAGAGAATGGAAAGAAGCGGTTTGTAATTCCAATATCATTCTTGAATCACCCTTCGTTTCAAGAATTGCTAAACAAGGCGGTGGAGGAATTTGGGTACAATTATCCGATGGGTGGACTCACAATTCCTTGTACAGAAGACATCTTCATTGACCTCACTTCTCGCTTGAACGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

99

Amino Acids

10.79

Weight (kDa)

8.85

Isoelectric Point (pI)

61.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 7 - 94 1.3e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 136, 197
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 2 cut(s) 215, 250
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 3 cut(s) 163, 179, 286
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 158
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 69, 261
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BpiI GAAGAC 2 cut(s) 69, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 230
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 248
BspACI CCGC 2 cut(s) 136, 197
BspANI GGCC 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 2 cut(s) 69, 261
BsuRI GGCC 1 cut(s) 5
Csp6I GTAC 2 cut(s) 214, 249
CviAII CATG 1 cut(s) 103
CviJI RGCY 3 cut(s) 5, 62, 99
CviKI_1 RGCY 3 cut(s) 5, 62, 99
CviQI GTAC 2 cut(s) 214, 249
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 104, 114
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 106
HinfI GANTC 2 cut(s) 163, 234
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 119, 225
Hpy188III TCNNGA 2 cut(s) 160, 179
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 106
Lsp1109I GCAGC 1 cut(s) 71
MboII GAAGA 3 cut(s) 69, 253, 266
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 144, 182, 206, 217, 240
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 2 cut(s) 196, 281
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 56
NlaIII CATG 1 cut(s) 106
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
RsaI GTAC 2 cut(s) 215, 250
RsaNI GTAC 2 cut(s) 214, 249
RseI CAYNNNNRTG 1 cut(s) 107
SatI GCNGC 1 cut(s) 60
SchI GAGTC 1 cut(s) 228
SetI ASST 2 cut(s) 64, 273
SgeI CNNG 7 cut(s) 48, 115, 172, 191, 205, 258, 291
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 5 cut(s) 144, 182, 206, 217, 240
SsiI CCGC 2 cut(s) 136, 197
TaqI TCGA 2 cut(s) 10, 35
TasI AATT 5 cut(s) 144, 182, 206, 217, 240
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 1 cut(s) 163
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 54, 253
XapI RAATTY 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.