Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002411

Physical Location & Seq

Genomic Coordinates Reverse (-)

41286503 .. 41286760

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG381800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGTCGAACATGGGGGTGGTGATGAAGAAGGTGGTGCTGATGAGGATCTGCAGCTCGTGGGCGATGAACATCGACGGCTGCAAGCACATGCGCCGCTGTCACCTATTCTCTCCCACCCACAATCTGGATCCGACCAAGATTTTGATGCTATGGCCACTTTCCAGTCCAGCCCAGCACTGCCACCGCAGCCCATGTCCTCCCATGGCCACTTTTTGGTCCAGCCCAGCACGGCCAAAGGAAATTCTAGAGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

8.96

Weight (kDa)

4.85

Isoelectric Point (pI)

82.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21200 AT3G03820 AT3G03830 AT3G03840 AT3G03850 AT4G13790 AT4G38825 AT4G38850 AT5G18010 AT5G18020 AT5G18030 AT5G18050 AT5G18060 AT5G18080
fragaria_vesca	FvH4_2g10800
malus_domestica	MD05G1052500.v1.1 MD05G1052800.v1.1
prunus_persica	Prupe.8G081200_v2.0.a1 Prupe.8G081400_v2.0.a1 Prupe.8G081600_v2.0.a1 Prupe.8G081800_v2.0.a1 Prupe.8G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268871 RchiOBHm_Chr6g0268931
rosa_laevigata	RLG00000004110 RLG00000013894
rosa_multiflora	Rmu_sc0000869.1_g000022 Rmu_sc0003073.1_g000028
rosa_roxburghii	Rroxscaffold_1G00023460 Rroxscaffold_1G00023500 Rroxscaffold_7G00199150
rosa_rugosa	Rorug05G0302200 Rorug05G0302300 Rorug05G0302700 Rorug06G0043400
rosa_samantha	Rh7BG159700 Rh7BG381800
rosa_wichuraiana	Rw5G034950 Rw5G035040 Rw6G014090 Rw6G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	125, 214
AciI	CCGC	2 cut(s)	95, 185
AclWI	GGATC	3 cut(s)	54, 123, 136
AcoI	YGGCCR	3 cut(s)	153, 205, 231
AcsI	RAATTY	1 cut(s)	241
AfiI	CCNNNNNNNGG	2 cut(s)	125, 214
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AlwI	GGATC	3 cut(s)	54, 123, 136
AoxI	GGCC	3 cut(s)	153, 205, 231
ApeKI	GCWGC	3 cut(s)	52, 79, 187
ApoI	RAATTY	1 cut(s)	241
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	32, 93
AvaII	GGWCC	1 cut(s)	217
BalI	TGGCCA	2 cut(s)	155, 207
BamHI	GGATCC	1 cut(s)	128
BauI	CACGAG	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	64, 66, 199
BceAI	ACGGC	2 cut(s)	92, 246
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	53, 80, 95, 188
BlsI	GCNGC	4 cut(s)	54, 81, 96, 189
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	130
BmsI	GCATC	1 cut(s)	136
BsaBI	GATNNNNATC	2 cut(s)	45, 69
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 214
Bse1I	ACTGG	1 cut(s)	163
Bse8I	GATNNNNATC	2 cut(s)	45, 69
BseDI	CCNNGG	1 cut(s)	202
BseJI	GATNNNNATC	2 cut(s)	45, 69
BseLI	CCNNNNNNNGG	2 cut(s)	125, 214
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	64, 66, 199
BseYI	CCCAGC	2 cut(s)	172, 224
BshFI	GGCC	3 cut(s)	155, 207, 233
BslI	CCNNNNNNNGG	2 cut(s)	125, 214
BsnI	GGCC	3 cut(s)	155, 207, 233
Bsp143I	GATC	2 cut(s)	46, 128
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	2 cut(s)	95, 185
BspANI	GGCC	3 cut(s)	155, 207, 233
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	3 cut(s)	54, 123, 136
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	46, 128
BssSI	CACGAG	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	49, 131
BstMBI	GATC	2 cut(s)	46, 128
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	64, 66, 199
BstX2I	RGATCY	2 cut(s)	46, 128
BstYI	RGATCY	2 cut(s)	46, 128
BsuRI	GGCC	3 cut(s)	155, 207, 233
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	4 cut(s)	11, 89, 193, 203
CviJI	RGCY	8 cut(s)	55, 79, 155, 171, 190, 207, 223, 233
CviKI_1	RGCY	8 cut(s)	55, 79, 155, 171, 190, 207, 223, 233
DpnI	GATC	2 cut(s)	48, 130
DpnII	GATC	2 cut(s)	46, 128
EaeI	YGGCCR	3 cut(s)	153, 205, 231
Eco130I	CCWWGG	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	4 cut(s)	14, 92, 196, 206
FaiI	YATR	5 cut(s)	12, 90, 152, 194, 204
FatI	CATG	4 cut(s)	10, 88, 192, 202
Fnu4HI	GCNGC	4 cut(s)	53, 80, 95, 188
Fsp4HI	GCNGC	4 cut(s)	53, 80, 95, 188
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	4 cut(s)	53, 80, 95, 188
GsaI	CCCAGC	2 cut(s)	176, 228
HaeIII	GGCC	3 cut(s)	155, 207, 233
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	14, 92, 196, 206
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HphI	GGTGA	2 cut(s)	32, 93
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	126, 246
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	52, 82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	14, 92, 196, 206
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	46, 128
LpnPI	CCDG	6 cut(s)	111, 176, 181, 186, 233, 238
Lsp1109I	GCAGC	3 cut(s)	64, 66, 199
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	2 cut(s)	48, 130
MboI	GATC	2 cut(s)	46, 128
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	2 cut(s)	46, 128
MlsI	TGGCCA	2 cut(s)	155, 207
MluCI	AATT	1 cut(s)	241
MluNI	TGGCCA	2 cut(s)	155, 207
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	37, 208, 242
Mox20I	TGGCCA	2 cut(s)	155, 207
MscI	TGGCCA	2 cut(s)	155, 207
MslI	CAYNNNNRTG	1 cut(s)	15
Msp20I	TGGCCA	2 cut(s)	155, 207
MspA1I	CMGCKG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	46, 128
NlaIII	CATG	4 cut(s)	14, 92, 196, 206
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	92
PflMI	CCANNNNNTGG	2 cut(s)	125, 214
PkrI	GCNGC	4 cut(s)	54, 81, 96, 189
PspFI	CCCAGC	2 cut(s)	172, 224
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	2 cut(s)	46, 128
RseI	CAYNNNNRTG	1 cut(s)	15
SatI	GCNGC	4 cut(s)	53, 80, 95, 188
Sau3AI	GATC	2 cut(s)	46, 128
Sau96I	GGNCC	1 cut(s)	217
SetI	ASST	4 cut(s)	34, 57, 106, 253
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	2 cut(s)	95, 185
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	202
TaqI	TCGA	2 cut(s)	6, 73
TasI	AATT	1 cut(s)	241
TauI	GCSGC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	3 cut(s)	52, 79, 187
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	39, 81
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	2 cut(s)	125, 214
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.