Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003073.1

Orthogroup ID

OG0002411

Physical Location & Seq

Genomic Coordinates Forward (+)

90620 .. 90976

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003073.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgggggtagtgatgaaggatgtggtgctgatggggatctgcagctcgtcggagatgaacagagacgtctacaagcacgctgctgttgcccattctctcccacccacaacttggatcccaccagatttttatgtgatggccacttttcggtccaacccagcaccacggaaggaaattctagaggttgttggaatttggggcatggagaacttagaggttgttgatttgaaggatattatacaactgggtctttgccataatttgaggattctgaatcttgagtttaataaaattcatggtgagataccaatcttaaactctgtgagcttagaggtcttgaatttagctgggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

5.45

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21200 AT3G03820 AT3G03830 AT3G03840 AT3G03850 AT4G13790 AT4G38825 AT4G38850 AT5G18010 AT5G18020 AT5G18030 AT5G18050 AT5G18060 AT5G18080
fragaria_vesca	FvH4_2g10800
malus_domestica	MD05G1052500.v1.1 MD05G1052800.v1.1
prunus_persica	Prupe.8G081200_v2.0.a1 Prupe.8G081400_v2.0.a1 Prupe.8G081600_v2.0.a1 Prupe.8G081800_v2.0.a1 Prupe.8G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268871 RchiOBHm_Chr6g0268931
rosa_laevigata	RLG00000004110 RLG00000013894
rosa_multiflora	Rmu_sc0000869.1_g000022 Rmu_sc0003073.1_g000028
rosa_roxburghii	Rroxscaffold_1G00023460 Rroxscaffold_1G00023500 Rroxscaffold_7G00199150
rosa_rugosa	Rorug05G0302200 Rorug05G0302300 Rorug05G0302700 Rorug06G0043400
rosa_samantha	Rh7BG159700 Rh7BG381800
rosa_wichuraiana	Rw5G034950 Rw5G035040 Rw6G014090 Rw6G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	69
AclWI	GGATC	3 cut(s)	44, 109, 122
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	4 cut(s)	174, 192, 291, 340
AcyI	GRCGYC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	111, 147
AgsI	TTSAA	2 cut(s)	229, 340
AluBI	AGCT	3 cut(s)	45, 327, 347
AluI	AGCT	3 cut(s)	45, 327, 347
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	3 cut(s)	44, 109, 122
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	42, 80
ApoI	RAATTY	4 cut(s)	174, 192, 291, 340
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	54, 67
BccI	CCATC	2 cut(s)	25, 130
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	179, 355
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	2 cut(s)	43, 81
BlsI	GCNGC	2 cut(s)	44, 82
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	299
BsaBI	GATNNNNATC	2 cut(s)	35, 308
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 147
Bse1I	ACTGG	1 cut(s)	249
Bse8I	GATNNNNATC	2 cut(s)	35, 308
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	2 cut(s)	35, 308
BseLI	CCNNNNNNNGG	2 cut(s)	111, 147
BseNI	ACTGG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	54, 67
BseYI	CCCAGC	2 cut(s)	157, 347
BshFI	GGCC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	111, 147
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	36, 114
BspANI	GGCC	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	44
BspPI	GGATC	3 cut(s)	44, 109, 122
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	36, 114
BssNI	GRCGYC	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	211, 328
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	39, 117
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	2 cut(s)	36, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	54, 67
BstX2I	RGATCY	2 cut(s)	36, 114
BstYI	RGATCY	2 cut(s)	36, 114
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	150
CviAII	CATG	2 cut(s)	202, 296
CviJI	RGCY	4 cut(s)	45, 140, 327, 347
CviKI_1	RGCY	4 cut(s)	45, 140, 327, 347
DdeI	CTNAG	2 cut(s)	211, 328
DpnI	GATC	2 cut(s)	38, 116
DpnII	GATC	2 cut(s)	36, 114
EaeI	YGGCCR	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	205, 299
FaiI	YATR	5 cut(s)	132, 203, 239, 258, 297
FatI	CATG	2 cut(s)	201, 295
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	43, 81
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	43, 81
FspBI	CTAG	2 cut(s)	179, 355
GluI	GCNGC	2 cut(s)	43, 81
GsaI	CCCAGC	2 cut(s)	161, 351
HaeIII	GGCC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	205, 299
HinfI	GANTC	2 cut(s)	268, 274
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	52, 273
Hpy188III	TCNNGA	3 cut(s)	179, 278, 337
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	10, 163, 223
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	211, 328
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	205, 299
Kzo9I	GATC	2 cut(s)	36, 114
LpnPI	CCDG	4 cut(s)	135, 171, 230, 333
Lsp1109I	GCAGC	2 cut(s)	54, 67
MaeI	CTAG	2 cut(s)	179, 355
MaeII	ACGT	1 cut(s)	66
MalI	GATC	2 cut(s)	38, 116
MboI	GATC	2 cut(s)	36, 114
MflI	RGATCY	2 cut(s)	36, 114
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	5 cut(s)	174, 192, 259, 291, 340
MluNI	TGGCCA	1 cut(s)	140
MmeI	TCCRAC	3 cut(s)	30, 169, 177
MnlI	CCTC	4 cut(s)	175, 208, 258, 325
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	285, 314
Msp20I	TGGCCA	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	2 cut(s)	36, 114
NlaIII	CATG	2 cut(s)	205, 299
NlaIV	GGNNCC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	268, 274
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	44, 82
PspFI	CCCAGC	2 cut(s)	157, 347
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	36, 114
SaqAI	TTAA	2 cut(s)	285, 314
SatI	GCNGC	2 cut(s)	43, 81
Sau3AI	GATC	2 cut(s)	36, 114
Sau96I	GGNCC	1 cut(s)	150
SetI	ASST	7 cut(s)	47, 69, 186, 219, 329, 336, 349
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	5 cut(s)	174, 192, 259, 291, 340
SspMI	CTAG	2 cut(s)	179, 355
TaiI	ACGT	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	5 cut(s)	174, 192, 259, 291, 340
TfiI	GAWTC	2 cut(s)	268, 274
Tru1I	TTAA	2 cut(s)	285, 314
Tru9I	TTAA	2 cut(s)	285, 314
TseI	GCWGC	2 cut(s)	42, 80
TspDTI	ATGAA	3 cut(s)	29, 71, 284
TspGWI	ACGGA	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	4 cut(s)	174, 192, 291, 340
XbaI	TCTAGA	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	2 cut(s)	179, 355
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.