FvH4_2g10800

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002411
Physical Location & Seq
Reverse (-)
9518774 .. 9519874
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10800.t1

Sequence Viewer

Length: 309 bp
ATGGCTATTCGAGTACCAGGAATCATGCATGCTAAGCAGATCTTGCGCCAGTCGAGCTTGTTTGCGAACAAGGCAAGTTCGACGTCCTCATCAGTGGGAGTTCCGAAGGGATACGTCGCTGTGTACGTCGGAGAAAGCGAAAGGAAGCGATTTGTGGTTCCGATATCGTTTTTGAGTCAGCCTTTGTTCCAGGAGCTGCTAAGTAAGGCGGTGGAGGAGTTCGGATATAACTACCCGACGGGGGGACTCACGATTCCTTGCAGAGAAGACATCTTCGTCGACCTCACTTCTCGACTGCATGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

103

Amino Acids

11.23

Weight (kDa)

9.25

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 98 7.8e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 279
AciI CCGC 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 15, 125
AfiI CCNNNNNNNGG 2 cut(s) 241, 242
AjnI CCWGG 2 cut(s) 16, 189
AluBI AGCT 2 cut(s) 57, 196
AluI AGCT 2 cut(s) 57, 196
AlwNI CAGNNNCTG 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 18, 191
BciVI GTATCC 1 cut(s) 104
BfuI GTATCC 1 cut(s) 104
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 18, 191
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 18, 191
BpiI GAAGAC 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 242
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 2 cut(s) 18, 191
BseLI CCNNNNNNNGG 2 cut(s) 241, 242
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 241, 242
BsmFI GGGAC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 18, 191
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 33, 200
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 34, 43, 54, 71
BstNI CCWGG 2 cut(s) 18, 191
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 16, 189
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuI GTATCC 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 196
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 14, 124
CviAII CATG 3 cut(s) 25, 29, 299
CviJI RGCY 4 cut(s) 5, 57, 181, 196
CviKI_1 RGCY 4 cut(s) 5, 57, 181, 196
CviQI GTAC 2 cut(s) 14, 124
DdeI CTNAG 2 cut(s) 33, 200
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 16, 189
EcoRV GATATC 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 30
FaeI CATG 3 cut(s) 28, 32, 302
FaiI YATR 4 cut(s) 26, 30, 228, 300
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 24, 28, 298
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 3 cut(s) 28, 32, 302
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 4 cut(s) 21, 175, 246, 253
Hpy166II GTNNAC 2 cut(s) 124, 280
Hpy188I TCNGA 4 cut(s) 105, 131, 162, 224
Hpy188III TCNNGA 2 cut(s) 250, 291
Hpy8I GTNNAC 2 cut(s) 124, 280
Hpy99I CGWCG 5 cut(s) 85, 119, 131, 241, 281
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 3 cut(s) 83, 114, 126
HpyCH4V TGCA 3 cut(s) 28, 261, 298
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 43, 54, 71
HpyF3I CTNAG 2 cut(s) 33, 200
HpySE526I ACGT 3 cut(s) 83, 114, 126
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 3 cut(s) 28, 32, 302
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 3, 30, 62, 176, 203
Lsp1109I GCAGC 1 cut(s) 183
MaeII ACGT 3 cut(s) 83, 114, 126
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 265, 278
MflI RGATCY 1 cut(s) 39
MlyI GAGTC 2 cut(s) 184, 240
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 97, 208, 293
Mph1103I ATGCAT 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 18, 191
MvaI CCWGG 2 cut(s) 18, 191
MwoI GCNNNNNNNGC 4 cut(s) 34, 43, 54, 71
NdeII GATC 1 cut(s) 39
NlaIII CATG 3 cut(s) 28, 32, 302
NlaIV GGNNCC 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 135
PfeI GAWTC 2 cut(s) 21, 253
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 2 cut(s) 183, 240
PpsI GAGTC 2 cut(s) 183, 240
Psp6I CCWGG 2 cut(s) 16, 189
PspGI CCWGG 2 cut(s) 16, 189
PspN4I GGNNCC 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 2 cut(s) 15, 125
RsaNI GTAC 2 cut(s) 14, 124
SalI GTCGAC 1 cut(s) 278
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 2 cut(s) 184, 240
ScrFI CCNGG 2 cut(s) 18, 191
SetI ASST 6 cut(s) 59, 86, 117, 129, 198, 285
SphI GCATGC 1 cut(s) 32
SsiI CCGC 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 16, 189
TaiI ACGT 3 cut(s) 86, 117, 129
TaqI TCGA 5 cut(s) 10, 53, 80, 279, 292
TfiI GAWTC 2 cut(s) 21, 253
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 196
TspRI CASTG 1 cut(s) 99
XceI RCATGY 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 279
ZraI GACGTC 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.