Rorug05G0302700

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002411
Physical Location & Seq
Reverse (-)
35282170 .. 35284380
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0302700.1

Sequence Viewer

Length: 1491 bp
ATGATGGTTTGGATTTGGGCAGTAATAATTGCACTGCTTGCAGTTGTTTATGTTCTGGAACCATGGAGAAGCAAGAAGAAGAGGTTACCTCCTGGTCCAAGAGGGTTTCCTATTTTCGGAAGCCTCAACTTGTTAGGGGAGTTTCCTTACAAAGACCTACACAGACTGGCTCAAAAGTATGGCGACATCATGCACATGCGTTTAGGCATCGTGTCTGCCATCATTGTCTCCTCCCCTCAAGCAGCCGAACTCTTCCTCAAGACCCACGACCTTGTTTTCGCAAGCAGGCCACCTCACGAAGGCGCAAAGCACATCTCTTTCGGGCAGAGGAACTTGAGCTTTTCCAAGTATGGCTCTTATTGGCGAGACATGCGCAAGATGTGCACCCTCGAGTTGCTCAGCAACCACAAAATCAATTCTTTCAAGGAAATGAGGAGAGAAGAGGTTGCTCTTTTCATAGAGGCCATTAAAGAGGCAGCTGCAACCAGTCACGAACCAGTCAATCTCAGCGCTAAGGTGTCATCTCTTAGTACGGATATGAGCTGCAGGATGGTGTTTGGGAAGAAGTACGCGGATAAGGAATTCGACGACAAGGGTTTCAAGTCTGTGATTCAACAAGGCATGCAATTAGCAGCTGCACCTAACTTGGGGGATTACATCCCTTGTATTGCTCCACTTGACCTCCAAGGGTTCACTAAGCGCATGAAGGCCGTTAACAAGGTGTTTGATGACTTTTTCGAGAAGATTATTGATCAACATCTTCAATCGAGGGATGAGGGAAAGACGAAGGACTTTGTTGATGTAATGCTCAGCTTTATGGGGACTCAAGAATCTGAATACCTATTTGAACGCTCCAATATCAAAGCAATCATTTTGGACATGCTTGTGGCCTCAACGGACACATCAGCAACAACAATTGAGTGGGCCCTCTCTGAACTCATAAAACATCCACAACTAATGAAGAAGGTCCAAAAAGAGCTAGAACATGTGGTGGGCATGGCGAGAATGGTTAAGGAATCAGACTTGGACAAGTTGGAGTACCTGGATATGATAGTGAAAGAAACCTTGAGGCTACATCCAGTGGCACCATTGTTGCTTCCCCATGCATCTACTGAAGATTGCACTGTTAATGGCTTCCACATACCCGAAAAATCGCGCGTTATTATAAACGTGTGGGCAATCGGCAGAGACAAGCATGCTTGGACCAATGCAGACGAGTTCATACCCGAAAGGTTTGCAGGGAGTAATATAGACCTGAAGGGAAACCACTTTCAGCTTATTCCATTTGGGTCGGGTCGCAGACGTTGCCCTGGAATTGAATTAGGGCTAGTTGTGGTCAAGCTAGTATTGGCACAACTTCTGCATTGTTTCGATTGGGAACTCCCAGATGGTTTGTTGCCCACTGAGTTGGACATGACGGAGGAGTTTGGTATAACTGTTCCACGAGCCAAGCATCTGCTGGCTGTTCCTTCTTATCGCCTACACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

496

Amino Acids

56.37

Weight (kDa)

8.08

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 30 - 483 3.3e-108 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
Acc16I TGCGCA 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 1084
AccII CGCG 3 cut(s) 572, 1156, 1158
AciI CCGC 1 cut(s) 572
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 2 cut(s) 1134, 1277
AfaI GTAC 3 cut(s) 532, 569, 1040
AfeI AGCGCT 1 cut(s) 511
AfiI CCNNNNNNNGG 3 cut(s) 116, 299, 647
AflIII ACRYGT 2 cut(s) 985, 1170
AgsI TTSAA 6 cut(s) 424, 601, 614, 764, 848, 1319
AjnI CCWGG 3 cut(s) 91, 1041, 1309
AluBI AGCT 8 cut(s) 339, 479, 543, 635, 813, 979, 1276, 1342
AluI AGCT 8 cut(s) 339, 479, 543, 635, 813, 979, 1276, 1342
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 3 cut(s) 232, 360, 1182
Alw44I GTGCAC 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 389
Aor51HI AGCGCT 1 cut(s) 511
AoxI GGCC 5 cut(s) 287, 462, 708, 888, 924
ApaI GGGCCC 1 cut(s) 928
ApaLI GTGCAC 1 cut(s) 382
ApeKI GCWGC 6 cut(s) 242, 476, 479, 543, 632, 635
ApoI RAATTY 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 5 cut(s) 305, 375, 512, 702, 1158
AspS9I GGNCC 5 cut(s) 95, 924, 925, 967, 1203
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 95, 967, 1203
BaeGI GKGCMC 2 cut(s) 386, 928
BanI GGYRCC 1 cut(s) 1084
BanII GRGCYC 1 cut(s) 928
BauI CACGAG 1 cut(s) 1443
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 6 cut(s) 254, 466, 488, 530, 622, 644
BccI CCATC 3 cut(s) 227, 544, 1382
BceAI ACGGC 1 cut(s) 695
BcgI CGANNNNNNTGC 2 cut(s) 1217, 1251
BciT130I CCWGG 3 cut(s) 93, 1043, 1311
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 3 cut(s) 232, 360, 1182
BfaI CTAG 3 cut(s) 980, 1328, 1343
BfmI CTRYAG 1 cut(s) 544
BfoI RGCGCY 1 cut(s) 513
BisI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
BlpI GCTNAGC 2 cut(s) 398, 809
BlsI GCNGC 6 cut(s) 244, 478, 481, 545, 634, 637
Bme1390I CCNGG 3 cut(s) 93, 1043, 1311
Bme18I GGWCC 3 cut(s) 95, 967, 1203
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 5 cut(s) 95, 924, 925, 967, 1203
BmiI GGNNCC 3 cut(s) 60, 926, 1086
BmrFI CCNGG 3 cut(s) 93, 1043, 1311
BmsI GCATC 3 cut(s) 216, 1115, 1462
BplI GAGNNNNNCTC 2 cut(s) 73, 105
Bpu10I CCTNAGC 1 cut(s) 513
Bpu1102I GCTNAGC 2 cut(s) 398, 809
BpuEI CTTGAG 5 cut(s) 222, 242, 355, 810, 1087
BsaBI GATNNNNATC 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 62, 685, 1309
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 299, 647
Bse1I ACTGG 4 cut(s) 171, 486, 497, 1079
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 3 cut(s) 93, 1043, 1311
BseDI CCNNGG 3 cut(s) 62, 685, 1309
BseGI GGATG 5 cut(s) 555, 657, 778, 946, 1075
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 116, 299, 647
BseMII CTCAG 4 cut(s) 412, 520, 823, 1395
BseNI ACTGG 4 cut(s) 171, 486, 497, 1079
BseRI GAGGAG 3 cut(s) 220, 448, 1436
BseSI GKGCMC 2 cut(s) 386, 928
BseXI GCAGC 6 cut(s) 254, 466, 488, 530, 622, 644
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 3 cut(s) 572, 1156, 1158
BshFI GGCC 5 cut(s) 289, 464, 710, 890, 926
BshNI GGYRCC 1 cut(s) 1084
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 3 cut(s) 116, 299, 647
BsmAI GTCTC 3 cut(s) 232, 360, 1182
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 5 cut(s) 289, 464, 710, 890, 926
BsoBI CYCGRG 1 cut(s) 389
Bsp120I GGGCCC 1 cut(s) 924
Bsp1286I GDGCHC 2 cut(s) 386, 928
Bsp143I GATC 1 cut(s) 751
Bsp1720I GCTNAGC 2 cut(s) 398, 809
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 1 cut(s) 572
BspANI GGCC 5 cut(s) 289, 464, 710, 890, 926
BspCNI CTCAG 4 cut(s) 411, 519, 822, 1396
BspFNI CGCG 3 cut(s) 572, 1156, 1158
BspLI GGNNCC 3 cut(s) 60, 926, 1086
BspMAI CTGCAG 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 1084
BsrI ACTGG 4 cut(s) 171, 486, 497, 1079
BssECI CCNNGG 3 cut(s) 62, 685, 1309
BssMI GATC 1 cut(s) 751
BssSI CACGAG 1 cut(s) 1443
BssT1I CCWWGG 2 cut(s) 62, 685
Bst2BI CACGAG 1 cut(s) 1443
Bst2UI CCWGG 3 cut(s) 93, 1043, 1311
Bst4CI ACNGT 2 cut(s) 1126, 1438
Bst6I CTCTTC 3 cut(s) 74, 257, 435
BstAPI GCANNNNNTGC 3 cut(s) 38, 381, 1305
BstC8I GCNNGC 6 cut(s) 39, 283, 287, 623, 1197, 1461
BstDEI CTNAG 7 cut(s) 398, 506, 513, 527, 696, 809, 1404
BstDSI CCRYGG 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 5 cut(s) 555, 657, 778, 946, 1075
BstFNI CGCG 3 cut(s) 572, 1156, 1158
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 5 cut(s) 305, 375, 512, 702, 1158
BstKTI GATC 1 cut(s) 754
BstMAI GTCTC 3 cut(s) 232, 360, 1182
BstMBI GATC 1 cut(s) 751
BstMWI GCNNNNNNNGC 4 cut(s) 38, 370, 381, 1305
BstNI CCWGG 3 cut(s) 93, 1043, 1311
BstNSI RCATGY 6 cut(s) 199, 373, 625, 883, 989, 1199
BstPI GGTNACC 1 cut(s) 84
BstSCI CCNGG 3 cut(s) 91, 1041, 1309
BstSFI CTRYAG 1 cut(s) 544
BstSLI GKGCMC 2 cut(s) 386, 928
BstUI CGCG 3 cut(s) 572, 1156, 1158
BstV1I GCAGC 6 cut(s) 254, 466, 488, 530, 622, 644
BstXI CCANNNNNNTGG 1 cut(s) 1408
BsuRI GGCC 5 cut(s) 289, 464, 710, 890, 926
BtgI CCRYGG 1 cut(s) 62
BtsCI GGATG 5 cut(s) 555, 657, 778, 946, 1075
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 4 cut(s) 32, 1086, 1122, 1401
Cac8I GCNNGC 6 cut(s) 39, 283, 287, 623, 1197, 1461
CfoI GCGC 5 cut(s) 305, 375, 512, 702, 1158
Cfr13I GGNCC 5 cut(s) 95, 924, 925, 967, 1203
Csp6I GTAC 3 cut(s) 531, 568, 1039
CviQI GTAC 3 cut(s) 531, 568, 1039
DdeI CTNAG 7 cut(s) 398, 506, 513, 527, 696, 809, 1404
DpnI GATC 1 cut(s) 753
DpnII GATC 1 cut(s) 751
Eam1104I CTCTTC 3 cut(s) 74, 257, 435
EarI CTCTTC 3 cut(s) 74, 257, 435
Eco130I CCWWGG 2 cut(s) 62, 685
Eco24I GRGCYC 1 cut(s) 928
Eco47I GGWCC 3 cut(s) 95, 967, 1203
Eco47III AGCGCT 1 cut(s) 511
Eco57I CTGAAG 2 cut(s) 1134, 1277
Eco88I CYCGRG 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 925
EcoO65I GGTNACC 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 3 cut(s) 91, 1041, 1309
EcoT14I CCWWGG 2 cut(s) 62, 685
EcoT22I ATGCAT 1 cut(s) 1108
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 2 cut(s) 62, 685
FaqI GGGAC 1 cut(s) 835
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
FokI GGATG 5 cut(s) 562, 644, 785, 933, 1062
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
FspBI CTAG 3 cut(s) 980, 1328, 1343
FspI TGCGCA 1 cut(s) 374
GlaI GCGC 5 cut(s) 304, 374, 511, 701, 1157
GluI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 5 cut(s) 289, 464, 710, 890, 926
HhaI GCGC 5 cut(s) 305, 375, 512, 702, 1158
Hin6I GCGC 5 cut(s) 303, 373, 510, 700, 1156
HinP1I GCGC 5 cut(s) 303, 373, 510, 700, 1156
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 4 cut(s) 610, 823, 830, 1016
HpaI GTTAAC 1 cut(s) 715
Hpy166II GTNNAC 3 cut(s) 384, 693, 715
Hpy188I TCNGA 4 cut(s) 119, 835, 934, 1021
Hpy188III TCNNGA 6 cut(s) 56, 259, 296, 491, 739, 827
Hpy8I GTNNAC 3 cut(s) 384, 693, 715
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 6 cut(s) 293, 700, 781, 958, 1252, 1479
HpyCH4III ACNGT 2 cut(s) 1126, 1438
HpyCH4IV ACGT 2 cut(s) 1170, 1303
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 370, 381, 1305
HpyF3I CTNAG 7 cut(s) 398, 506, 513, 527, 696, 809, 1404
HpySE526I ACGT 2 cut(s) 1170, 1303
HspAI GCGC 5 cut(s) 303, 373, 510, 700, 1156
Ksp22I TGATCA 1 cut(s) 751
KspAI GTTAAC 1 cut(s) 715
Kzo9I GATC 1 cut(s) 751
LmnI GCTCC 2 cut(s) 676, 857
Lsp1109I GCAGC 6 cut(s) 254, 466, 488, 530, 622, 644
LweI GCATC 3 cut(s) 216, 1115, 1462
MaeI CTAG 3 cut(s) 980, 1328, 1343
MaeII ACGT 2 cut(s) 1170, 1303
MaeIII GTNAC 2 cut(s) 84, 488
MalI GATC 1 cut(s) 753
MboI GATC 1 cut(s) 751
MboII GAAGA 9 cut(s) 88, 91, 244, 452, 574, 752, 754, 973, 1127
MfeI CAATTG 1 cut(s) 915
MhlI GDGCHC 2 cut(s) 386, 928
MluCI AATT 7 cut(s) 27, 415, 581, 626, 915, 1314, 1319
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 2 cut(s) 1014, 1389
Mph1103I ATGCAT 1 cut(s) 1108
MseI TTAA 4 cut(s) 468, 714, 1011, 1128
MslI CAYNNNNRTG 2 cut(s) 194, 884
MspA1I CMGCKG 2 cut(s) 479, 635
MspR9I CCNGG 3 cut(s) 93, 1043, 1311
MunI CAATTG 1 cut(s) 915
MvaI CCWGG 3 cut(s) 93, 1043, 1311
MvnI CGCG 3 cut(s) 572, 1156, 1158
MwoI GCNNNNNNNGC 4 cut(s) 38, 370, 381, 1305
NcoI CCATGG 1 cut(s) 62
NdeII GATC 1 cut(s) 751
NlaIV GGNNCC 3 cut(s) 60, 926, 1086
NmuCI GTSAC 1 cut(s) 488
NsbI TGCGCA 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 1108
NspI RCATGY 6 cut(s) 199, 373, 625, 883, 989, 1199
PaeI GCATGC 2 cut(s) 625, 1199
PaeR7I CTCGAG 1 cut(s) 389
PciI ACATGT 1 cut(s) 985
PfeI GAWTC 3 cut(s) 610, 830, 1016
PkrI GCNGC 6 cut(s) 244, 478, 481, 545, 634, 637
PleI GAGTC 1 cut(s) 817
PpsI GAGTC 1 cut(s) 817
PscI ACATGT 1 cut(s) 985
PsiI TTATAA 1 cut(s) 1166
Psp6I CCWGG 3 cut(s) 91, 1041, 1309
PspEI GGTNACC 1 cut(s) 84
PspGI CCWGG 3 cut(s) 91, 1041, 1309
PspN4I GGNNCC 3 cut(s) 60, 926, 1086
PspOMI GGGCCC 1 cut(s) 924
PspPI GGNCC 5 cut(s) 95, 924, 925, 967, 1203
PspXI VCTCGAGB 1 cut(s) 389
PstI CTGCAG 1 cut(s) 548
PvuII CAGCTG 2 cut(s) 479, 635
RsaI GTAC 3 cut(s) 532, 569, 1040
RsaNI GTAC 3 cut(s) 531, 568, 1039
RseI CAYNNNNRTG 2 cut(s) 194, 884
SaqAI TTAA 4 cut(s) 468, 714, 1011, 1128
SatI GCNGC 6 cut(s) 243, 477, 480, 544, 633, 636
Sau3AI GATC 1 cut(s) 751
Sau96I GGNCC 5 cut(s) 95, 924, 925, 967, 1203
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 3 cut(s) 93, 1043, 1311
SduI GDGCHC 2 cut(s) 386, 928
SfaNI GCATC 3 cut(s) 216, 1115, 1462
SfcI CTRYAG 1 cut(s) 544
Sfr274I CTCGAG 1 cut(s) 389
SinI GGWCC 3 cut(s) 95, 967, 1203
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 2 cut(s) 194, 884
SmlI CTYRAG 6 cut(s) 237, 257, 334, 389, 825, 1066
SmoI CTYRAG 6 cut(s) 237, 257, 334, 389, 825, 1066
SphI GCATGC 2 cut(s) 625, 1199
Sse9I AATT 7 cut(s) 27, 415, 581, 626, 915, 1314, 1319
SsiI CCGC 1 cut(s) 572
SspMI CTAG 3 cut(s) 980, 1328, 1343
StyD4I CCNGG 3 cut(s) 91, 1041, 1309
StyI CCWWGG 2 cut(s) 62, 685
TaaI ACNGT 2 cut(s) 1126, 1438
TaiI ACGT 2 cut(s) 1173, 1306
TaqI TCGA 5 cut(s) 390, 585, 738, 767, 1371
TasI AATT 7 cut(s) 27, 415, 581, 626, 915, 1314, 1319
TfiI GAWTC 3 cut(s) 610, 830, 1016
Tru1I TTAA 4 cut(s) 468, 714, 1011, 1128
Tru9I TTAA 4 cut(s) 468, 714, 1011, 1128
TscAI CASTG 4 cut(s) 39, 1086, 1129, 1408
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 6 cut(s) 242, 476, 479, 543, 632, 635
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 4 cut(s) 445, 719, 974, 1210
TspGWI ACGGA 3 cut(s) 548, 911, 1433
TspRI CASTG 4 cut(s) 39, 1086, 1129, 1408
VneI GTGCAC 1 cut(s) 382
VpaK11BI GGWCC 3 cut(s) 95, 967, 1203
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 1 cut(s) 581
XceI RCATGY 6 cut(s) 199, 373, 625, 883, 989, 1199
XcmI CCANNNNNNNNNTGG 1 cut(s) 1456
XhoI CTCGAG 1 cut(s) 389
XspI CTAG 3 cut(s) 980, 1328, 1343
Zsp2I ATGCAT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.