RLG00000013894

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002411
Physical Location & Seq
Forward (+)
43736743 .. 43738267
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013894

Sequence Viewer

Length: 543 bp
ATGTTGCTAGCAAAAAAGTCCCCGAAATCAGATCCGGTCCGGATTAGGTTTATGTTCTCTCCTCCTTCAGCCGGTGACTTGCTGTCACAGTTTGCAGAGGCCGATGGTCGTTCGCTAGGTTCACAGTGGATCTGCATGGACAGGTGGCATTATAAGATGGTCGTAAGCTCATCGGGATCTAGTGGAAATAGGTACCTAGCTCTTCTAGTTCGAGTTATAACTACTCTTAAGTATATCATGGCTATTCGAGTACCAGGAATCATGCATGCTAAGCAGATCTTGCGCCAGTCTAGCTTGTTTGCAAACAAGGCGAGTTCAACGTCTTCTGTGGGAGTTCCGAAAGGATATGTCGCTGTGTACGTTGGAGAGAGTGAAAGAAAACGATTTGTGGTTCCGATATCGTTTTTGAGCCAGCCTTTGTTCCAAGAGCTGCTAAGTAAGGCGGAGGAGGAGTTCGGGTACAACTATCCAACAGGCGGACTCACGATTCCTTGCAGAGAAGACATCTTCGTTGACCTCACTTCTCGACTGAATGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

181

Amino Acids

20.0

Weight (kDa)

9.66

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 92 - 176 4.3e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 153, 218
Acc65I GGTACC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 39
AciI CCGC 2 cut(s) 443, 477
AclWI GGATC 3 cut(s) 26, 137, 184
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 4 cut(s) 194, 252, 359, 461
AfiI CCNNNNNNNGG 2 cut(s) 71, 476
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 318
AhdI GACNNNNNGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 4 cut(s) 168, 200, 294, 430
AluI AGCT 4 cut(s) 168, 200, 294, 430
AlwI GGATC 3 cut(s) 26, 137, 184
Aor13HI TCCGGA 1 cut(s) 39
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 430
Asp718I GGTACC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 192
BbsI GAAGAC 2 cut(s) 315, 507
BbvI GCAGC 1 cut(s) 417
BccI CCATC 2 cut(s) 98, 151
BciT130I CCWGG 1 cut(s) 255
BfaI CTAG 6 cut(s) 8, 116, 180, 197, 206, 291
BfrI CTTAAG 1 cut(s) 227
BglII AGATCT 1 cut(s) 276
BisI GCNGC 1 cut(s) 431
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 432
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 37
BmeRI GACNNNNNGTC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 194, 393
BmrFI CCNGG 1 cut(s) 255
BmtI GCTAGC 1 cut(s) 11
BpiI GAAGAC 2 cut(s) 315, 507
Bpu1102I GCTNAGC 1 cut(s) 270
BsaWI WCCGGW 2 cut(s) 34, 39
BsaXI ACNNNNNCTCC 4 cut(s) 437, 443, 467, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 476
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 286
BseAI TCCGGA 1 cut(s) 39
BseBI CCWGG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 71, 476
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 3 cut(s) 51, 461, 464
BseXI GCAGC 1 cut(s) 417
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 192
BsiSI CCGG 3 cut(s) 35, 40, 72
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 2 cut(s) 71, 476
BsmFI GGGAC 1 cut(s) 4
BsnI GGCC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 39
Bsp143I GATC 4 cut(s) 31, 129, 176, 276
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 2 cut(s) 443, 477
BspANI GGCC 1 cut(s) 101
BspEI TCCGGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 194, 393
BspOI GCTAGC 1 cut(s) 11
BspPI GGATC 3 cut(s) 26, 137, 184
BspQI GCTCTTC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 192
BspTI CTTAAG 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 4 cut(s) 31, 129, 176, 276
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 90, 126
Bst6I CTCTTC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 9, 267, 413
BstDEI CTNAG 2 cut(s) 270, 434
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 4 cut(s) 34, 132, 179, 279
BstMBI GATC 4 cut(s) 31, 129, 176, 276
BstMWI GCNNNNNNNGC 4 cut(s) 271, 280, 291, 308
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 2 cut(s) 315, 507
BstX2I RGATCY 4 cut(s) 31, 129, 176, 276
BstYI RGATCY 4 cut(s) 31, 129, 176, 276
BsuRI GGCC 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 3 cut(s) 9, 267, 413
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 37
CpoI CGGWCCG 1 cut(s) 37
Csp6I GTAC 4 cut(s) 193, 251, 358, 460
CspI CGGWCCG 1 cut(s) 37
CviAII CATG 4 cut(s) 136, 238, 262, 266
CviJI RGCY 9 cut(s) 71, 101, 168, 200, 242, 294, 411, 415, 430
CviKI_1 RGCY 9 cut(s) 71, 101, 168, 200, 242, 294, 411, 415, 430
CviQI GTAC 4 cut(s) 193, 251, 358, 460
DdeI CTNAG 2 cut(s) 270, 434
DpnI GATC 4 cut(s) 33, 131, 178, 278
DpnII GATC 4 cut(s) 31, 129, 176, 276
DriI GACNNNNNGTC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 207
EciI GGCGGA 2 cut(s) 458, 492
Eco32I GATATC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 253
EcoRV GATATC 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 267
FaeI CATG 4 cut(s) 139, 241, 265, 269
FaiI YATR 9 cut(s) 53, 137, 153, 218, 234, 239, 263, 267, 348
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 4
FatI CATG 4 cut(s) 135, 237, 261, 265
Fnu4HI GCNGC 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 431
FspBI CTAG 6 cut(s) 8, 116, 180, 197, 206, 291
GlaI GCGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 431
HaeIII GGCC 1 cut(s) 101
HapII CCGG 3 cut(s) 35, 40, 72
HhaI GCGC 1 cut(s) 285
Hin1II CATG 4 cut(s) 139, 241, 265, 269
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 3 cut(s) 258, 480, 487
HpaII CCGG 3 cut(s) 35, 40, 72
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 122, 358, 514
Hpy188I TCNGA 3 cut(s) 31, 339, 396
Hpy188III TCNNGA 4 cut(s) 40, 174, 484, 525
Hpy8I GTNNAC 3 cut(s) 122, 358, 514
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 2 cut(s) 90, 126
HpyCH4IV ACGT 2 cut(s) 320, 360
HpyCH4V TGCA 5 cut(s) 95, 135, 265, 302, 495
HpyF10VI GCNNNNNNNGC 4 cut(s) 271, 280, 291, 308
HpyF3I CTNAG 2 cut(s) 270, 434
HpySE526I ACGT 2 cut(s) 320, 360
Hsp92II CATG 4 cut(s) 139, 241, 265, 269
HspAI GCGC 1 cut(s) 283
Kpn2I TCCGGA 1 cut(s) 39
KpnI GGTACC 1 cut(s) 196
Kzo9I GATC 4 cut(s) 31, 129, 176, 276
LguI GCTCTTC 1 cut(s) 207
LpnPI CCDG 9 cut(s) 48, 53, 85, 127, 240, 267, 299, 425, 459
Lsp1109I GCAGC 1 cut(s) 417
MaeI CTAG 6 cut(s) 8, 116, 180, 197, 206, 291
MaeII ACGT 2 cut(s) 320, 360
MaeIII GTNAC 2 cut(s) 74, 84
MalI GATC 4 cut(s) 33, 131, 178, 278
MboI GATC 4 cut(s) 31, 129, 176, 276
MboII GAAGA 4 cut(s) 194, 315, 499, 512
MflI RGATCY 4 cut(s) 31, 129, 176, 276
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 2 cut(s) 343, 494
MnlI CCTC 5 cut(s) 72, 91, 439, 442, 527
Mph1103I ATGCAT 1 cut(s) 267
MroI TCCGGA 1 cut(s) 39
MseI TTAA 1 cut(s) 228
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 3 cut(s) 35, 40, 72
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 271, 280, 291, 308
NdeII GATC 4 cut(s) 31, 129, 176, 276
NheI GCTAGC 1 cut(s) 7
NlaIII CATG 4 cut(s) 139, 241, 265, 269
NlaIV GGNNCC 2 cut(s) 194, 393
NmuCI GTSAC 2 cut(s) 74, 84
NsiI ATGCAT 1 cut(s) 267
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PfeI GAWTC 2 cut(s) 258, 487
PkrI GCNGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PsiI TTATAA 2 cut(s) 153, 218
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 194, 393
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 4 cut(s) 31, 129, 176, 276
RsaI GTAC 4 cut(s) 194, 252, 359, 461
RsaNI GTAC 4 cut(s) 193, 251, 358, 460
Rsr2I CGGWCCG 1 cut(s) 37
RsrII CGGWCCG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 431
Sau3AI GATC 4 cut(s) 31, 129, 176, 276
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 1 cut(s) 255
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SphI GCATGC 1 cut(s) 269
SsiI CCGC 2 cut(s) 443, 477
SspMI CTAG 6 cut(s) 8, 116, 180, 197, 206, 291
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 90, 126
TaiI ACGT 2 cut(s) 323, 363
TaqI TCGA 3 cut(s) 211, 247, 526
TfiI GAWTC 2 cut(s) 258, 487
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 2 cut(s) 74, 84
TseI GCWGC 1 cut(s) 430
Tsp45I GTSAC 2 cut(s) 74, 84
TspRI CASTG 1 cut(s) 131
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 269
XspI CTAG 6 cut(s) 8, 116, 180, 197, 206, 291
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.