Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002411

Physical Location & Seq

Genomic Coordinates Reverse (-)

5962773 .. 5963405

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCAGGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCGTCATTTCAAGCTCTGCTCAGTAAATCCGAAGAAGAGTTTGGGTTTGCTCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAAGATACTTTCATCAATGTGACTTCTCGGCTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0019897 GO:0019898 GO:0030307 GO:0032879 GO:0040008 GO:0044425 GO:0044459 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0065007 GO:0065008 GO:0071944 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

90

Amino Acids

9.74

Weight (kDa)

9.52

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	15 - 88	1.1e-22	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21200 AT3G03820 AT3G03830 AT3G03840 AT3G03850 AT4G13790 AT4G38825 AT4G38850 AT5G18010 AT5G18020 AT5G18030 AT5G18050 AT5G18060 AT5G18080
fragaria_vesca	FvH4_2g10800
malus_domestica	MD05G1052500.v1.1 MD05G1052800.v1.1
prunus_persica	Prupe.8G081200_v2.0.a1 Prupe.8G081400_v2.0.a1 Prupe.8G081600_v2.0.a1 Prupe.8G081800_v2.0.a1 Prupe.8G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268871 RchiOBHm_Chr6g0268931
rosa_laevigata	RLG00000004110 RLG00000013894
rosa_multiflora	Rmu_sc0000869.1_g000022 Rmu_sc0003073.1_g000028
rosa_roxburghii	Rroxscaffold_1G00023460 Rroxscaffold_1G00023500 Rroxscaffold_7G00199150
rosa_rugosa	Rorug05G0302200 Rorug05G0302300 Rorug05G0302700 Rorug06G0043400
rosa_samantha	Rh7BG159700 Rh7BG381800
rosa_wichuraiana	Rw5G034950 Rw5G035040 Rw6G014090 Rw6G014120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	70, 127
AccBSI	CCGCTC	2 cut(s)	48, 133
AciI	CCGC	5 cut(s)	46, 54, 68, 89, 131
AclWI	GGATC	2 cut(s)	70, 217
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	6 cut(s)	107, 139, 141, 173, 174, 206
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	2 cut(s)	70, 217
AlwNI	CAGNNNCTG	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	70, 127
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	202
BisI	GCNGC	4 cut(s)	46, 57, 69, 131
BlsI	GCNGC	4 cut(s)	47, 58, 70, 132
BmiI	GGNNCC	3 cut(s)	72, 129, 266
BpuEI	CTTGAG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	68
BshNI	GGYRCC	2 cut(s)	70, 127
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	62, 222
BspACI	CCGC	5 cut(s)	46, 54, 68, 89, 131
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	3 cut(s)	72, 129, 266
BspPI	GGATC	2 cut(s)	70, 217
BspT107I	GGYRCC	2 cut(s)	70, 127
BsrBI	CCGCTC	2 cut(s)	48, 133
BssMI	GATC	2 cut(s)	62, 222
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	2 cut(s)	110, 180
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	41, 170
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	65, 225
BstMBI	GATC	2 cut(s)	62, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSNI	TACGTA	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	94
CviJI	RGCY	7 cut(s)	5, 45, 108, 147, 164, 216, 265
CviKI_1	RGCY	7 cut(s)	5, 45, 108, 147, 164, 216, 265
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	41, 170
DpnI	GATC	2 cut(s)	64, 224
DpnII	GATC	2 cut(s)	62, 222
Eam1104I	CTCTTC	2 cut(s)	110, 180
EarI	CTCTTC	2 cut(s)	110, 180
Eco105I	TACGTA	1 cut(s)	97
FaiI	YATR	1 cut(s)	139
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	46, 57, 69, 131
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	46, 57, 69, 131
GluI	GCNGC	4 cut(s)	46, 57, 69, 131
HinfI	GANTC	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	181, 207
Hpy188III	TCNNGA	2 cut(s)	10, 233
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	41, 170
HpySE526I	ACGT	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	62, 222
LmnI	GCTCC	3 cut(s)	26, 53, 270
LpnPI	CCDG	2 cut(s)	45, 122
Lsp1109I	GCAGC	1 cut(s)	68
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	64, 224
MbiI	CCGCTC	2 cut(s)	48, 133
MboI	GATC	2 cut(s)	62, 222
MboII	GAAGA	6 cut(s)	46, 124, 127, 194, 197, 248
MflI	RGATCY	1 cut(s)	62
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	2 cut(s)	62, 222
NlaIV	GGNNCC	3 cut(s)	72, 129, 266
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	47, 58, 70, 132
Ppu21I	YACGTR	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	72, 129, 266
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	4 cut(s)	46, 57, 69, 131
Sau3AI	GATC	2 cut(s)	62, 222
SetI	ASST	2 cut(s)	99, 166
SgeI	CNNG	8 cut(s)	22, 72, 98, 121, 154, 173, 240, 245
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SnaBI	TACGTA	1 cut(s)	97
SsiI	CCGC	5 cut(s)	46, 54, 68, 89, 131
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	99
TauI	GCSGC	3 cut(s)	48, 71, 133
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.