Rroxscaffold_1G00023500

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002411
Physical Location & Seq
Reverse (-)
29021148 .. 29022474
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023500.1

Sequence Viewer

Length: 483 bp
ATGAACACCGAACCGCTTATCGCAAGGCAAGAAGTCCTTTTCCGGAAGGCAGAGAAAAGAACCTTGCGACGAGGTTGGTGCTCTCCTCGTCCACATCGTTTGATCTGCACCCCACGGTGCTGGCACGCTCTCGCATTCAGAAGAGACAGTTTGTACCAAACTGATTTTGGGAGCCAAACAGAGAGTATGATTCTTTGGTTTGGAAGGAAAGACCGACTTGAGTTGCTGATGATGAACCTGATCTGTCATGTGTGGCATTTCCTCCAACAAGGAAGTTTGTCCGCAAAAAAAGCAGACTCAACATATTTTGGTGTTCCAAAAGGCTTCTTAGCTGTCTATGTTGGAGAGGGTAGTGAAAAGAAGAGACACATGGTTCCAGTTTCATTTTTGAGTCAACCTAGCTTCATTTCAAGAGGTGCTATGGCGGAGGAGAATTTGAATTTGATCATCCAATGGCTGGCCGGCCTCAGAATTCCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

160

Amino Acids

18.55

Weight (kDa)

9.84

Isoelectric Point (pI)

59.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 96 - 160 1.2e-06 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 457
AccIII TCCGGA 1 cut(s) 42
AciI CCGC 3 cut(s) 14, 282, 425
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 3 cut(s) 433, 439, 471
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 2 cut(s) 411, 439
AluBI AGCT 2 cut(s) 332, 402
AluI AGCT 2 cut(s) 332, 402
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 138, 358
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 2 cut(s) 459, 463
ApoI RAATTY 3 cut(s) 433, 439, 471
Bbv12I GWGCWC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BclI TGATCA 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 138, 358
BfaI CTAG 1 cut(s) 399
BmiI GGNNCC 2 cut(s) 173, 375
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 377
BseAI TCCGGA 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 75, 443
BsgI GTGCAG 1 cut(s) 91
BshFI GGCC 2 cut(s) 461, 465
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 43, 462
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 2 cut(s) 138, 358
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 2 cut(s) 461, 465
Bsp1286I GDGCHC 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 102, 240, 444
BspACI CCGC 3 cut(s) 14, 282, 425
BspANI GGCC 2 cut(s) 461, 465
BspCNI CTCAG 1 cut(s) 480
BspEI TCCGGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 173, 375
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 3 cut(s) 102, 240, 444
Bst4CI ACNGT 2 cut(s) 117, 149
Bst6I CTCTTC 2 cut(s) 136, 356
BstC8I GCNNGC 4 cut(s) 122, 126, 459, 463
BstDEI CTNAG 2 cut(s) 328, 467
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 447
BstKTI GATC 3 cut(s) 105, 243, 447
BstMAI GTCTC 2 cut(s) 138, 358
BstMBI GATC 3 cut(s) 102, 240, 444
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 461, 465
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 447
Cac8I GCNNGC 4 cut(s) 122, 126, 459, 463
Cfr10I RCCGGY 1 cut(s) 461
Csp6I GTAC 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 81, 116
CviAII CATG 2 cut(s) 248, 370
CviJI RGCY 7 cut(s) 174, 324, 332, 402, 457, 461, 465
CviKI_1 RGCY 7 cut(s) 174, 324, 332, 402, 457, 461, 465
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 328, 467
DpnI GATC 3 cut(s) 104, 242, 446
DpnII GATC 3 cut(s) 102, 240, 444
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 136, 356
EarI CTCTTC 2 cut(s) 136, 356
EciI GGCGGA 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 471
FaeI CATG 2 cut(s) 251, 373
FaiI YATR 6 cut(s) 188, 249, 304, 339, 371, 422
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 201, 233
FatI CATG 2 cut(s) 247, 369
FbaI TGATCA 1 cut(s) 444
FokI GGATG 1 cut(s) 434
FseI GGCCGGCC 1 cut(s) 465
FspBI CTAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 461, 465
HapII CCGG 2 cut(s) 43, 462
Hin1II CATG 2 cut(s) 251, 373
HincII GTYRAC 1 cut(s) 395
HindII GTYRAC 1 cut(s) 395
HinfI GANTC 3 cut(s) 190, 296, 391
HpaII CCGG 2 cut(s) 43, 462
Hpy166II GTNNAC 2 cut(s) 92, 395
Hpy188I TCNGA 2 cut(s) 140, 470
Hpy188III TCNNGA 2 cut(s) 43, 411
Hpy8I GTNNAC 2 cut(s) 92, 395
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 40, 198
HpyCH4III ACNGT 2 cut(s) 117, 149
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 328, 467
Hsp92II CATG 2 cut(s) 251, 373
Kpn2I TCCGGA 1 cut(s) 42
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 3 cut(s) 102, 240, 444
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 6 cut(s) 56, 106, 251, 390, 443, 475
MaeI CTAG 1 cut(s) 399
MalI GATC 3 cut(s) 104, 242, 446
MboI GATC 3 cut(s) 102, 240, 444
MboII GAAGA 2 cut(s) 153, 373
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 3 cut(s) 433, 439, 471
MlyI GAGTC 2 cut(s) 290, 400
MmeI TCCRAC 2 cut(s) 289, 322
MnlI CCTC 7 cut(s) 65, 96, 272, 340, 407, 421, 476
MroI TCCGGA 1 cut(s) 42
MroNI GCCGGC 1 cut(s) 461
MspI CCGG 2 cut(s) 43, 462
Mva1269I GAATGC 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 290
NaeI GCCGGC 1 cut(s) 463
NdeII GATC 3 cut(s) 102, 240, 444
NgoMIV GCCGGC 1 cut(s) 461
NlaIII CATG 2 cut(s) 251, 373
NlaIV GGNNCC 2 cut(s) 173, 375
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PctI GAATGC 1 cut(s) 134
PdiI GCCGGC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 457
PleI GAGTC 2 cut(s) 290, 399
PpsI GAGTC 2 cut(s) 290, 399
PspN4I GGNNCC 2 cut(s) 173, 375
RigI GGCCGGCC 1 cut(s) 465
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
Sau3AI GATC 3 cut(s) 102, 240, 444
SchI GAGTC 2 cut(s) 290, 400
SduI GDGCHC 1 cut(s) 83
SetI ASST 7 cut(s) 65, 76, 240, 334, 400, 404, 418
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 433, 439, 471
SsiI CCGC 3 cut(s) 14, 282, 425
SspMI CTAG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 117, 149
TaqII GACCGA 1 cut(s) 228
TasI AATT 3 cut(s) 433, 439, 471
TfiI GAWTC 1 cut(s) 190
TspDTI ATGAA 4 cut(s) 17, 248, 372, 394
Van91I CCANNNNNTGG 1 cut(s) 457
XapI RAATTY 3 cut(s) 433, 439, 471
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.