AT5G18050

auxin-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002411
Physical Location & Seq
Reverse (-)
5974341 .. 5975087
747 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18050.1

Sequence Viewer

Length: 273 bp
ATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTCTAAGCCGCTCCACCGCAGCAGTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAAAGATACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTCAAGCTCTGCTCAGTAAATCTGAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAACGATACCTTGTCATGAAGATACGTTCATCAATGTGACTTCTCGGCTCCAATGA

Protein Analysis

90

Amino Acids

9.84

Weight (kDa)

9.25

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 88 3e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 19
AciI CCGC 3 cut(s) 46, 54, 68
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 145, 161
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 174, 206
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 67
BisI GCNGC 3 cut(s) 46, 57, 69
BlsI GCNGC 3 cut(s) 47, 58, 70
BmiI GGNNCC 2 cut(s) 72, 266
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 3 cut(s) 46, 54, 68
BspCNI CTCAG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 72, 266
BspT107I GGYRCC 1 cut(s) 70
BsrBI CCGCTC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 27
BssMI GATC 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 41, 124, 170
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
CciI TCATGA 1 cut(s) 232
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 233
CviJI RGCY 6 cut(s) 5, 45, 108, 164, 216, 265
CviKI_1 RGCY 6 cut(s) 5, 45, 108, 164, 216, 265
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 3 cut(s) 41, 124, 170
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco105I TACGTA 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 1 cut(s) 236
FaiI YATR 2 cut(s) 139, 234
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 46, 57, 69
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 46, 57, 69
GluI GCNGC 3 cut(s) 46, 57, 69
Hin1II CATG 1 cut(s) 236
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 20, 94
Hpy188I TCNGA 2 cut(s) 181, 207
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 20, 94
HpyAV CCTTC 1 cut(s) 162
HpyCH4IV ACGT 2 cut(s) 96, 242
HpyCH4V TGCA 2 cut(s) 29, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 41, 124, 170
HpySE526I ACGT 2 cut(s) 96, 242
Hsp92II CATG 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 53, 270
LpnPI CCDG 2 cut(s) 8, 122
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 2 cut(s) 96, 242
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 201
MbiI CCGCTC 1 cut(s) 48
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 124, 194, 248
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 199
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 72, 266
NmeAIII GCCGAG 2 cut(s) 44, 241
NmuCI GTSAC 1 cut(s) 253
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 3 cut(s) 47, 58, 70
Ppu21I YACGTR 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 72, 266
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 3 cut(s) 46, 57, 69
Sau3AI GATC 1 cut(s) 199
SetI ASST 5 cut(s) 99, 154, 166, 229, 245
SgeI CNNG 9 cut(s) 20, 35, 76, 98, 121, 154, 173, 240, 245
SmiMI CAYNNNNRTG 1 cut(s) 251
SnaBI TACGTA 1 cut(s) 97
SsiI CCGC 3 cut(s) 46, 54, 68
TaiI ACGT 2 cut(s) 99, 245
TauI GCSGC 2 cut(s) 48, 71
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 235, 249
TspRI CASTG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.