Auxin responsive protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21200 AT3G03820 AT3G03830 AT3G03840 AT3G03850 AT4G13790 AT4G38825 AT4G38850 AT5G18010 AT5G18020 AT5G18030 AT5G18050 AT5G18060 AT5G18080 |
| fragaria_vesca | FvH4_2g10800 |
| malus_domestica | MD05G1052500.v1.1 MD05G1052800.v1.1 |
| prunus_persica | Prupe.8G081200_v2.0.a1 Prupe.8G081400_v2.0.a1 Prupe.8G081600_v2.0.a1 Prupe.8G081800_v2.0.a1 Prupe.8G081900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0268871 RchiOBHm_Chr6g0268931 |
| rosa_laevigata | RLG00000004110 RLG00000013894 |
| rosa_multiflora | Rmu_sc0000869.1_g000022 Rmu_sc0003073.1_g000028 |
| rosa_roxburghii | Rroxscaffold_1G00023460 Rroxscaffold_1G00023500 Rroxscaffold_7G00199150 |
| rosa_rugosa | Rorug05G0302200 Rorug05G0302300 Rorug05G0302700 Rorug06G0043400 |
| rosa_samantha | Rh7BG159700 Rh7BG381800 |
| rosa_wichuraiana | Rw5G034950 Rw5G035040 Rw6G014090 Rw6G014120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 361 |
| AciI | CCGC | 3 cut(s) | 324, 327, 361 |
| AclWI | GGATC | 2 cut(s) | 360, 365 |
| AcsI | RAATTY | 1 cut(s) | 100 |
| AcuI | CTGAAG | 1 cut(s) | 222 |
| AgsI | TTSAA | 2 cut(s) | 137, 182 |
| AjnI | CCWGG | 1 cut(s) | 373 |
| AluBI | AGCT | 5 cut(s) | 226, 271, 304, 316, 356 |
| AluI | AGCT | 5 cut(s) | 226, 271, 304, 316, 356 |
| AlwI | GGATC | 2 cut(s) | 360, 365 |
| ApeKI | GCWGC | 1 cut(s) | 304 |
| ApoI | RAATTY | 1 cut(s) | 100 |
| AsuII | TTCGAA | 1 cut(s) | 97 |
| AxyI | CCTNAGG | 1 cut(s) | 128 |
| BbvI | GCAGC | 1 cut(s) | 291 |
| BccI | CCATC | 1 cut(s) | 85 |
| BciT130I | CCWGG | 1 cut(s) | 375 |
| BisI | GCNGC | 2 cut(s) | 305, 327 |
| BlpI | GCTNAGC | 1 cut(s) | 357 |
| BlsI | GCNGC | 2 cut(s) | 306, 328 |
| Bme1390I | CCNGG | 1 cut(s) | 375 |
| BmrFI | CCNGG | 1 cut(s) | 375 |
| BmsI | GCATC | 2 cut(s) | 130, 223 |
| BpmI | CTGGAG | 1 cut(s) | 287 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 357 |
| Bpu14I | TTCGAA | 1 cut(s) | 97 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 260, 290 |
| Bse1I | ACTGG | 1 cut(s) | 270 |
| Bse21I | CCTNAGG | 1 cut(s) | 128 |
| BseBI | CCWGG | 1 cut(s) | 375 |
| BseGI | GGATG | 2 cut(s) | 121, 169 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseNI | ACTGG | 1 cut(s) | 270 |
| BseXI | GCAGC | 1 cut(s) | 291 |
| Bsp119I | TTCGAA | 1 cut(s) | 97 |
| Bsp143I | GATC | 2 cut(s) | 365, 370 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 357 |
| BspACI | CCGC | 3 cut(s) | 324, 327, 361 |
| BspCNI | CTCAG | 1 cut(s) | 349 |
| BspPI | GGATC | 2 cut(s) | 360, 365 |
| BspT104I | TTCGAA | 1 cut(s) | 97 |
| BsrBI | CCGCTC | 1 cut(s) | 361 |
| BsrI | ACTGG | 1 cut(s) | 270 |
| BssMI | GATC | 2 cut(s) | 365, 370 |
| Bst2UI | CCWGG | 1 cut(s) | 375 |
| Bst4CI | ACNGT | 3 cut(s) | 25, 67, 178 |
| Bst6I | CTCTTC | 1 cut(s) | 177 |
| BstBI | TTCGAA | 1 cut(s) | 97 |
| BstC8I | GCNNGC | 1 cut(s) | 336 |
| BstDEI | CTNAG | 3 cut(s) | 128, 227, 357 |
| BstF5I | GGATG | 2 cut(s) | 121, 169 |
| BstKTI | GATC | 2 cut(s) | 368, 373 |
| BstMBI | GATC | 2 cut(s) | 365, 370 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 313, 335 |
| BstNI | CCWGG | 1 cut(s) | 375 |
| BstNSI | RCATGY | 1 cut(s) | 338 |
| BstSCI | CCNGG | 1 cut(s) | 373 |
| BstV1I | GCAGC | 1 cut(s) | 291 |
| BstX2I | RGATCY | 1 cut(s) | 365 |
| BstYI | RGATCY | 1 cut(s) | 365 |
| Bsu36I | CCTNAGG | 1 cut(s) | 128 |
| BtsCI | GGATG | 2 cut(s) | 121, 169 |
| BtsI | GCAGTG | 1 cut(s) | 121 |
| BtsIMutI | CAGTG | 1 cut(s) | 121 |
| Cac8I | GCNNGC | 1 cut(s) | 336 |
| CviAII | CATG | 1 cut(s) | 335 |
| CviJI | RGCY | 7 cut(s) | 107, 226, 271, 291, 304, 316, 356 |
| CviKI_1 | RGCY | 7 cut(s) | 107, 226, 271, 291, 304, 316, 356 |
| DdeI | CTNAG | 3 cut(s) | 128, 227, 357 |
| DpnI | GATC | 2 cut(s) | 367, 372 |
| DpnII | GATC | 2 cut(s) | 365, 370 |
| Eam1104I | CTCTTC | 1 cut(s) | 177 |
| EarI | CTCTTC | 1 cut(s) | 177 |
| Eco57I | CTGAAG | 1 cut(s) | 222 |
| Eco81I | CCTNAGG | 1 cut(s) | 128 |
| EcoRII | CCWGG | 1 cut(s) | 373 |
| FaeI | CATG | 1 cut(s) | 338 |
| FaiI | YATR | 3 cut(s) | 56, 200, 336 |
| FatI | CATG | 1 cut(s) | 334 |
| FauI | CCCGC | 1 cut(s) | 331 |
| Fnu4HI | GCNGC | 2 cut(s) | 305, 327 |
| FokI | GGATG | 2 cut(s) | 108, 176 |
| Fsp4HI | GCNGC | 2 cut(s) | 305, 327 |
| GluI | GCNGC | 2 cut(s) | 305, 327 |
| GsuI | CTGGAG | 1 cut(s) | 287 |
| Hin1II | CATG | 1 cut(s) | 338 |
| HindIII | AAGCTT | 1 cut(s) | 224 |
| HinfI | GANTC | 3 cut(s) | 50, 133, 378 |
| Hpy166II | GTNNAC | 1 cut(s) | 21 |
| Hpy188I | TCNGA | 3 cut(s) | 241, 370, 383 |
| Hpy8I | GTNNAC | 1 cut(s) | 21 |
| HpyCH4III | ACNGT | 3 cut(s) | 25, 67, 178 |
| HpyCH4IV | ACGT | 1 cut(s) | 210 |
| HpyCH4V | TGCA | 1 cut(s) | 338 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 313, 335 |
| HpyF3I | CTNAG | 3 cut(s) | 128, 227, 357 |
| HpySE526I | ACGT | 1 cut(s) | 210 |
| Hsp92II | CATG | 1 cut(s) | 338 |
| Kzo9I | GATC | 2 cut(s) | 365, 370 |
| LmnI | GCTCC | 1 cut(s) | 268 |
| LpnPI | CCDG | 5 cut(s) | 46, 201, 251, 301, 360 |
| Lsp1109I | GCAGC | 1 cut(s) | 291 |
| LweI | GCATC | 2 cut(s) | 130, 223 |
| MaeII | ACGT | 1 cut(s) | 210 |
| MaeIII | GTNAC | 1 cut(s) | 261 |
| MalI | GATC | 2 cut(s) | 367, 372 |
| MbiI | CCGCTC | 1 cut(s) | 361 |
| MboI | GATC | 2 cut(s) | 365, 370 |
| MboII | GAAGA | 1 cut(s) | 194 |
| MflI | RGATCY | 1 cut(s) | 365 |
| MluCI | AATT | 1 cut(s) | 100 |
| MlyI | GAGTC | 1 cut(s) | 372 |
| MnlI | CCTC | 1 cut(s) | 304 |
| MseI | TTAA | 1 cut(s) | 281 |
| MspR9I | CCNGG | 1 cut(s) | 375 |
| MvaI | CCWGG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 313, 335 |
| NdeII | GATC | 2 cut(s) | 365, 370 |
| NlaIII | CATG | 1 cut(s) | 338 |
| NspI | RCATGY | 1 cut(s) | 338 |
| NspV | TTCGAA | 1 cut(s) | 97 |
| PaeI | GCATGC | 1 cut(s) | 338 |
| PfeI | GAWTC | 2 cut(s) | 50, 133 |
| PfoI | TCCNGGA | 1 cut(s) | 373 |
| PkrI | GCNGC | 2 cut(s) | 306, 328 |
| PleI | GAGTC | 1 cut(s) | 372 |
| PpsI | GAGTC | 1 cut(s) | 372 |
| Psp6I | CCWGG | 1 cut(s) | 373 |
| PspGI | CCWGG | 1 cut(s) | 373 |
| PsuI | RGATCY | 1 cut(s) | 365 |
| SaqAI | TTAA | 1 cut(s) | 281 |
| SatI | GCNGC | 2 cut(s) | 305, 327 |
| Sau3AI | GATC | 2 cut(s) | 365, 370 |
| SchI | GAGTC | 1 cut(s) | 372 |
| ScrFI | CCNGG | 1 cut(s) | 375 |
| SetI | ASST | 7 cut(s) | 213, 220, 228, 273, 306, 318, 358 |
| SfaNI | GCATC | 2 cut(s) | 130, 223 |
| SfuI | TTCGAA | 1 cut(s) | 97 |
| SphI | GCATGC | 1 cut(s) | 338 |
| Sse9I | AATT | 1 cut(s) | 100 |
| SsiI | CCGC | 3 cut(s) | 324, 327, 361 |
| StyD4I | CCNGG | 1 cut(s) | 373 |
| TaaI | ACNGT | 3 cut(s) | 25, 67, 178 |
| TaiI | ACGT | 1 cut(s) | 213 |
| TaqI | TCGA | 1 cut(s) | 97 |
| TasI | AATT | 1 cut(s) | 100 |
| TauI | GCSGC | 1 cut(s) | 329 |
| TfiI | GAWTC | 2 cut(s) | 50, 133 |
| Tru1I | TTAA | 1 cut(s) | 281 |
| Tru9I | TTAA | 1 cut(s) | 281 |
| TscAI | CASTG | 1 cut(s) | 121 |
| TseI | GCWGC | 1 cut(s) | 304 |
| TspRI | CASTG | 1 cut(s) | 121 |
| XapI | RAATTY | 1 cut(s) | 100 |
| XceI | RCATGY | 1 cut(s) | 338 |