RchiOBHm_Chr6g0268931

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002411
Physical Location & Seq
Reverse (-)
26156900 .. 26157166
267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24122

Sequence Viewer

Length: 267 bp
ATGCATGCTAAGCAGATTCTCCGGCGAGGAAGTTTGTTGGCTTGTAAAGCAGATTTAATACATGCTGGTGTTCCAAAAGGCTTCTTACCGGTGTATGTGGGAGAATGTAGTGAAAAGAAGAGATACATGGTTCCAGTTTCTGTCTTGAGTCAGCCTTCATTTCAAGAGTTGCTGAGTAAGGCAGAGGAAGAATATGGATTCAAACATCCAATGGGTGGACTCACAATTCCTTGCCGAGATCTCACTTCTCGCTTGAAGGGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

88

Amino Acids

9.76

Weight (kDa)

9.33

Isoelectric Point (pI)

69.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 79 4.2e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 164, 202, 256
AlwNI CAGNNNCTG 1 cut(s) 140
AsiGI ACCGGT 1 cut(s) 88
BglII AGATCT 1 cut(s) 238
BlpI GCTNAGC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 132
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 134
BshTI ACCGGT 1 cut(s) 88
BsiSI CCGG 2 cut(s) 22, 89
BslI CCNNNNNNNGG 1 cut(s) 215
Bsp143I GATC 1 cut(s) 238
Bsp1720I GCTNAGC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 9, 173
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 10, 47
BstNSI RCATGY 2 cut(s) 8, 65
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtsCI GGATG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 88
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 3 cut(s) 5, 62, 127
CviJI RGCY 4 cut(s) 41, 81, 154, 262
CviKI_1 RGCY 4 cut(s) 41, 81, 154, 262
DdeI CTNAG 2 cut(s) 9, 173
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 65, 130
FaiI YATR 5 cut(s) 6, 63, 96, 128, 195
FatI CATG 3 cut(s) 4, 61, 126
FokI GGATG 1 cut(s) 192
HapII CCGG 2 cut(s) 22, 89
Hin1II CATG 3 cut(s) 8, 65, 130
HinfI GANTC 4 cut(s) 16, 148, 198, 219
HpaII CCGG 2 cut(s) 22, 89
Hpy166II GTNNAC 1 cut(s) 218
Hpy188III TCNNGA 2 cut(s) 145, 164
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 165, 250
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 47
HpyF3I CTNAG 2 cut(s) 9, 173
Hsp92II CATG 3 cut(s) 8, 65, 130
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 35, 51, 102, 147
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 130, 200
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 225
MlyI GAGTC 2 cut(s) 157, 213
MnlI CCTC 2 cut(s) 20, 178
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 66
MspI CCGG 2 cut(s) 22, 89
MwoI GCNNNNNNNGC 2 cut(s) 10, 47
NdeII GATC 1 cut(s) 238
NlaIII CATG 3 cut(s) 8, 65, 130
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 65
PaeI GCATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 16, 198
PflMI CCANNNNNTGG 1 cut(s) 215
PinAI ACCGGT 1 cut(s) 88
PleI GAGTC 2 cut(s) 156, 213
PpsI GAGTC 2 cut(s) 156, 213
PspN4I GGNNCC 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 1 cut(s) 238
SchI GAGTC 2 cut(s) 157, 213
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SphI GCATGC 1 cut(s) 8
Sse9I AATT 1 cut(s) 225
TasI AATT 1 cut(s) 225
TfiI GAWTC 2 cut(s) 16, 198
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 147
Van91I CCANNNNNTGG 1 cut(s) 215
XceI RCATGY 2 cut(s) 8, 65
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.