Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

10437353 .. 10439469

Gene Structure 2117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G24570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGACCGTTGATATTATGCGTTTACCTAAGATGGAAGATCAAACGGCTATACAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACTTGATTCGTGTCCTCTCTAACCGTCCCGAAGAACGTAACGTTGATTGCTCTGAGATCACTGATTTCACAGTTTCTAAGTTCAAGAAAGTTATCTCTCTTCTTAACCGTTCCGGTCACGCCCGGTTTAGACGTGGTCCGGTTCATTCCCCTCCTTCCTCCTCCGTTCCTCCACCGGTGAAAGTGACAACTCCGGCTCCCACTCAGATCTCTGCTCCAGCACCGGTTAGCTTCGTTCAGGCAAATCAACAAAGCGTGACGTTAGATTTCACTAGACCGAGCGTTTTTGGCGCTAAAACCAAGAGCTCGGAGGTTGTTGAGTTTGCTAAAGAGAGCTTTAGCGTATCTTCTAACTCTTCTTTCATGTCTTCTGCGATCACCGGTGATGGAAGTGTCTCTAAAGGCTCTTCGATCTTTCTTGCTCCGGCTCCAGCGGTGCCAGTGACTTCCTCCGGGAAACCGCCGCTTTCTGGTCTTCCTTACAGGAAGAGATGCTTTGAACATGACCACTCTGAAGGCTTTTCCGGCAAGATCTCTGGCTCCGGCAACGGCAAGTGCCATTGCAAGAAAAGCCGAAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGGTAAGTGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGAAAGTATGGACAAAAACCGATCAAAGGCTCACCACATCCACGGGGTTATTACAAGTGTAGTACATTTAGAGGATGTCCAGCGAGGAAACACGTGGAAAGAGCTTTGGATGATTCAACGATGTTGATTGTGACGTACGAAGGAGAGCACCGTCATCACCAGTCCACGATGCAGGAGCATGTAACTCCTAGCGTGAGTGGTTTGGTGTTTGGTTCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

321

Amino Acids

35.01

Weight (kDa)

9.8

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	191 - 240	6.4e-19	Plant zinc cluster domain
WRKY	PF03106	244 - 300	7.6e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	523
AciI	CCGC	4 cut(s)	521, 548, 551, 698
AclI	AACGTT	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	621
AcvI	CACGTG	1 cut(s)	838
AfaI	GTAC	3 cut(s)	693, 808, 881
AfiI	CCNNNNNNNGG	2 cut(s)	557, 770
AflIII	ACRYGT	1 cut(s)	835
AgeI	ACCGGT	3 cut(s)	262, 310, 467
AgsI	TTSAA	3 cut(s)	172, 587, 861
AjiI	CACGTC	1 cut(s)	221
AluBI	AGCT	5 cut(s)	59, 318, 393, 423, 848
AluI	AGCT	5 cut(s)	59, 318, 393, 423, 848
Alw21I	GWGCWC	2 cut(s)	395, 894
Alw26I	GTCTC	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	59
AsiGI	ACCGGT	3 cut(s)	262, 310, 467
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	2 cut(s)	211, 541
AsuHPI	GGTGA	5 cut(s)	277, 457, 482, 768, 893
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	395
BbrPI	CACGTG	1 cut(s)	838
BbsI	GAAGAC	2 cut(s)	447, 554
Bbv12I	GWGCWC	2 cut(s)	395, 894
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	25, 467
BceAI	ACGGC	2 cut(s)	60, 652
BcnI	CCSGG	2 cut(s)	211, 541
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	360, 933
BfoI	RGCGCY	1 cut(s)	381
BglII	AGATCT	2 cut(s)	294, 618
BisI	GCNGC	2 cut(s)	60, 551
BlsI	GCNGC	2 cut(s)	61, 552
Bme1390I	CCNGG	2 cut(s)	211, 541
Bme18I	GGWCC	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	4 cut(s)	285, 516, 525, 628
BmrFI	CCNGG	2 cut(s)	211, 541
BmsI	GCATC	3 cut(s)	71, 569, 903
BpiI	GAAGAC	2 cut(s)	447, 554
BpmI	CTGGAG	2 cut(s)	288, 501
BpuMI	CCSGG	2 cut(s)	211, 541
BsaAI	YACGTR	1 cut(s)	838
BsaJI	CCNNGG	1 cut(s)	785
BsaWI	WCCGGW	5 cut(s)	200, 226, 262, 310, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 770
Bse118I	RCCGGY	4 cut(s)	262, 310, 467, 694
Bse1I	ACTGG	2 cut(s)	527, 904
Bse3DI	GCAATG	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	4 cut(s)	678, 781, 824, 859
BseLI	CCNNNNNNNGG	2 cut(s)	557, 770
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	132, 305
BseNI	ACTGG	2 cut(s)	527, 904
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	523
BshTI	ACCGGT	3 cut(s)	262, 310, 467
BsiHKAI	GWGCWC	2 cut(s)	395, 894
BsiWI	CGTACG	1 cut(s)	879
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	557, 770
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	395, 894
Bsp143I	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
BspACI	CCGC	4 cut(s)	521, 548, 551, 698
BspCNI	CTCAG	2 cut(s)	133, 304
BspLI	GGNNCC	4 cut(s)	285, 516, 525, 628
BspQI	GCTCTTC	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	646
BsrFI	RCCGGY	4 cut(s)	262, 310, 467, 694
BsrI	ACTGG	2 cut(s)	527, 904
BssAI	RCCGGY	4 cut(s)	262, 310, 467, 694
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
Bst4CI	ACNGT	6 cut(s)	7, 113, 160, 197, 685, 896
Bst6I	CTCTTC	5 cut(s)	192, 448, 499, 569, 671
BstBAI	YACGTR	1 cut(s)	838
BstDEI	CTNAG	4 cut(s)	27, 141, 165, 291
BstDSI	CCRYGG	1 cut(s)	785
BstF5I	GGATG	4 cut(s)	678, 781, 824, 859
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	8 cut(s)	40, 147, 297, 465, 501, 621, 714, 768
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 375, 612, 657, 704, 713
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	2 cut(s)	209, 539
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	447, 554
BstX2I	RGATCY	2 cut(s)	294, 618
BstYI	RGATCY	2 cut(s)	294, 618
BtgI	CCRYGG	1 cut(s)	785
BtrI	CACGTC	1 cut(s)	221
BtsCI	GGATG	4 cut(s)	678, 781, 824, 859
BtsIMutI	CAGTG	2 cut(s)	147, 534
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	4 cut(s)	262, 310, 467, 694
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	3 cut(s)	692, 807, 880
CspAI	ACCGGT	3 cut(s)	262, 310, 467
CviAII	CATG	5 cut(s)	82, 451, 590, 741, 923
CviQI	GTAC	3 cut(s)	692, 807, 880
DdeI	CTNAG	4 cut(s)	27, 141, 165, 291
DpnI	GATC	8 cut(s)	39, 146, 296, 464, 500, 620, 713, 767
DpnII	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
Eam1104I	CTCTTC	5 cut(s)	192, 448, 499, 569, 671
EarI	CTCTTC	5 cut(s)	192, 448, 499, 569, 671
Ecl136II	GAGCTC	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	621
Eco72I	CACGTG	1 cut(s)	838
EcoICRI	GAGCTC	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	395
FaeI	CATG	5 cut(s)	85, 454, 593, 744, 926
FaiI	YATR	9 cut(s)	17, 50, 83, 452, 591, 722, 742, 753, 924
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	5 cut(s)	81, 450, 589, 740, 922
Fnu4HI	GCNGC	2 cut(s)	60, 551
FokI	GGATG	4 cut(s)	685, 768, 831, 866
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	60, 551
FspBI	CTAG	2 cut(s)	360, 933
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	2 cut(s)	60, 551
GsuI	CTGGAG	2 cut(s)	288, 501
HaeII	RGCGCY	1 cut(s)	381
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	5 cut(s)	85, 454, 593, 744, 926
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	94, 857
HphI	GGTGA	5 cut(s)	277, 457, 482, 768, 893
Hpy166II	GTNNAC	2 cut(s)	23, 909
Hpy188I	TCNGA	5 cut(s)	142, 294, 397, 601, 672
Hpy188III	TCNNGA	2 cut(s)	116, 172
Hpy8I	GTNNAC	2 cut(s)	23, 909
HpyAV	CCTTC	3 cut(s)	252, 596, 878
HpyCH4III	ACNGT	6 cut(s)	7, 113, 160, 197, 685, 896
HpyCH4IV	ACGT	6 cut(s)	124, 129, 220, 347, 837, 878
HpyCH4V	TGCA	4 cut(s)	62, 651, 707, 916
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 375, 612, 657, 704, 713
HpyF3I	CTNAG	4 cut(s)	27, 141, 165, 291
HpySE526I	ACGT	6 cut(s)	124, 129, 220, 347, 837, 878
Hsp92II	CATG	5 cut(s)	85, 454, 593, 744, 926
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	6 cut(s)	289, 307, 514, 520, 632, 919
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	3 cut(s)	71, 569, 903
MaeI	CTAG	2 cut(s)	360, 933
MaeII	ACGT	6 cut(s)	124, 129, 220, 347, 837, 878
MaeIII	GTNAC	7 cut(s)	125, 203, 271, 343, 529, 874, 925
MalI	GATC	8 cut(s)	39, 146, 296, 464, 500, 620, 713, 767
MboI	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
MflI	RGATCY	2 cut(s)	294, 618
MhlI	GDGCHC	2 cut(s)	395, 894
MnlI	CCTC	9 cut(s)	113, 249, 256, 259, 267, 391, 547, 809, 822
MseI	TTAA	2 cut(s)	74, 192
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	2 cut(s)	211, 541
MwoI	GCNNNNNNNGC	6 cut(s)	78, 375, 612, 657, 704, 713
NciI	CCSGG	2 cut(s)	211, 541
NdeII	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
NlaIII	CATG	5 cut(s)	85, 454, 593, 744, 926
NlaIV	GGNNCC	4 cut(s)	285, 516, 525, 628
NmuCI	GTSAC	5 cut(s)	203, 271, 343, 529, 874
NspI	RCATGY	1 cut(s)	926
PciSI	GCTCTTC	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	94, 857
Pfl23II	CGTACG	1 cut(s)	879
PflFI	GACNNNGTC	1 cut(s)	222
PfoI	TCCNGGA	1 cut(s)	539
PinAI	ACCGGT	3 cut(s)	262, 310, 467
PkrI	GCNGC	2 cut(s)	61, 552
PmaCI	CACGTG	1 cut(s)	838
PmlI	CACGTG	1 cut(s)	838
Ppu21I	YACGTR	1 cut(s)	838
Psp124BI	GAGCTC	1 cut(s)	395
Psp1406I	AACGTT	1 cut(s)	129
PspCI	CACGTG	1 cut(s)	838
PspLI	CGTACG	1 cut(s)	879
PspN4I	GGNNCC	4 cut(s)	285, 516, 525, 628
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	2 cut(s)	294, 618
PsyI	GACNNNGTC	1 cut(s)	222
RsaI	GTAC	3 cut(s)	693, 808, 881
RsaNI	GTAC	3 cut(s)	692, 807, 880
SacI	GAGCTC	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	74, 192
SatI	GCNGC	2 cut(s)	60, 551
Sau3AI	GATC	8 cut(s)	37, 144, 294, 462, 498, 618, 711, 765
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	211, 541
SduI	GDGCHC	2 cut(s)	395, 894
SfaNI	GCATC	3 cut(s)	71, 569, 903
SgrAI	CRCCGGYG	2 cut(s)	262, 467
SinI	GGWCC	1 cut(s)	224
SsiI	CCGC	4 cut(s)	521, 548, 551, 698
SspI	AATATT	1 cut(s)	737
SspMI	CTAG	2 cut(s)	360, 933
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	209, 539
TaaI	ACNGT	6 cut(s)	7, 113, 160, 197, 685, 896
TaiI	ACGT	6 cut(s)	127, 132, 223, 350, 840, 881
TaqI	TCGA	1 cut(s)	497
TaqII	GACCGA	1 cut(s)	379
TatI	WGTACW	1 cut(s)	806
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	94, 857
Tru1I	TTAA	2 cut(s)	74, 192
Tru9I	TTAA	2 cut(s)	74, 192
TscAI	CASTG	2 cut(s)	154, 534
TseFI	GTSAC	5 cut(s)	203, 271, 343, 529, 874
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	5 cut(s)	203, 271, 343, 529, 874
TspDTI	ATGAA	4 cut(s)	221, 439, 689, 729
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	154, 534
Tth111I	GACNNNGTC	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	926
XspI	CTAG	2 cut(s)	360, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.