RchiOBHm_Chr6g0305101
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
64177764 .. 64179655
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27418

Sequence Viewer

Length: 1020 bp
ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAAAAGGCCATCCAGGAGGCCGCGTCGCAAGGCTTGAAGAGCATGGAGCACCTGATTCGTTACCTCTCTCACCAGCAACTGTCTAACCAGCCCTCCTCTCGCGTGGACTGCACCGACCTCACAGACCACACCGTCTCCAAGTTCAAAAAGGTCATTTCCCTTCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCGGTCGCCGCGGTTCCGGCTCACCATCATCATCATCATCAGTTCTCTTCTTCTTCTTCTTCCACCTCTCTCCCCTTCCCTCCCTCCCAGACCCTGAGCTTGGCTCCGGCACCCGTCGCTTCCCCGGCGATTGCTCCTCCGGCTCCGGTCAAAGCTCCGGAGACTAATTTTGCTCATTCCATGACGCTTGACTTCACCAGGCCTAATGCGCTGGCCTCAAACCCTAAGTGCACCGACATCGAGTTCAGCGTCTCGTCCAGCTCGTCGTTCATGTCGTCGGCCATCACCGGAGACAACAGCGTCTCCAACGGCAAGCTCGGTCTGTTCATTGCCCCCAATCCGGCCCCTGCCGTCTCCGGCGCCAAGCCTCCGCTCTCCGCCGCGCCGTTTAAGAAGCGGTGCCACGAGCACGACCACTCCGACGATGTCTCCTGCAAGTTATCCGGATCCGGATCCGCTTCCGGGTCGGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGGGTGAAGAAAACAATCCGAGTCCCGGCGATTAGTTCAAAGATTGCCGATATTCCGCCGGACGAGTACTCCTGGAGAAAGTACGGCCAGAAGCCGATCAAAGGCTCACCTTACCCAAGGGGTTATTACAAGTGTAGTACAGTGAGGGGGTGTCCGGCGAGAAAACACGTGGAGCGAGCACCGGATGATCCGGCGATGCTGATTGTAACGTACGAGGGGGAGCATCGACACGCTCCGGATAATATGAGCGGCGGAGTTGGGATGGTATTCGAGTCAACGTGA

Protein Analysis

339

Amino Acids

36.62

Weight (kDa)

9.53

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 210 - 263 1.2e-19 Plant zinc cluster domain
WRKY PF03106 267 - 323 8e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 536
AccB1I GGYRCC 3 cut(s) 346, 596, 636
AccBSI CCGCTC 2 cut(s) 610, 987
AccII CGCG 5 cut(s) 62, 141, 234, 248, 620
AccIII TCCGGA 4 cut(s) 394, 680, 686, 973
AclWI GGATC 5 cut(s) 678, 684, 691, 697, 920
AcoI YGGCCR 3 cut(s) 214, 516, 823
AcvI CACGTG 1 cut(s) 907
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 4 cut(s) 806, 821, 877, 950
AfiI CCNNNNNNNGG 7 cut(s) 228, 337, 577, 699, 729, 763, 839
AflIII ACRYGT 1 cut(s) 904
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 76, 184, 777
AjnI CCWGG 3 cut(s) 51, 434, 809
AluBI AGCT 5 cut(s) 21, 336, 392, 498, 553
AluI AGCT 5 cut(s) 21, 336, 392, 498, 553
Alw21I GWGCWC 4 cut(s) 90, 470, 648, 919
Alw26I GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
Alw44I GTGCAC 1 cut(s) 466
AlwI GGATC 5 cut(s) 678, 684, 691, 697, 920
AlwNI CAGNNNCTG 2 cut(s) 118, 331
Aor13HI TCCGGA 4 cut(s) 394, 680, 686, 973
AoxI GGCC 8 cut(s) 45, 57, 214, 437, 450, 516, 579, 823
ApaLI GTGCAC 1 cut(s) 466
AsiGI ACCGGT 1 cut(s) 238
AspLEI GCGC 4 cut(s) 234, 448, 599, 622
AspS9I GGNCC 3 cut(s) 210, 236, 580
AsuC2I CCSGG 4 cut(s) 223, 362, 700, 764
AsuHPI GGTGA 6 cut(s) 101, 251, 424, 514, 754, 837
AvaII GGWCC 2 cut(s) 210, 236
BaeGI GKGCMC 1 cut(s) 470
BamHI GGATCC 2 cut(s) 683, 689
BanI GGYRCC 3 cut(s) 346, 596, 636
BauI CACGAG 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 4 cut(s) 90, 470, 648, 919
BccI CCATC 5 cut(s) 25, 56, 270, 527, 994
BceAI ACGGC 4 cut(s) 562, 572, 607, 838
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 457, 491
BciT130I CCWGG 3 cut(s) 53, 436, 811
BcnI CCSGG 4 cut(s) 223, 362, 700, 764
BcoDI GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
BfoI RGCGCY 1 cut(s) 600
BisI GCNGC 4 cut(s) 60, 246, 618, 988
BlsI GCNGC 4 cut(s) 61, 247, 619, 989
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 7 cut(s) 53, 223, 362, 436, 700, 764, 811
Bme18I GGWCC 2 cut(s) 210, 236
BmgT120I GGNCC 3 cut(s) 210, 236, 580
BmiI GGNNCC 9 cut(s) 252, 342, 348, 381, 582, 598, 638, 685, 691
BmrFI CCNGG 7 cut(s) 53, 223, 362, 436, 700, 764, 811
BmsI GCATC 2 cut(s) 924, 970
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 1 cut(s) 832
Bpu10I CCTNAGC 1 cut(s) 332
BpuMI CCSGG 4 cut(s) 223, 362, 700, 764
BsaAI YACGTR 1 cut(s) 907
BsaBI GATNNNNATC 1 cut(s) 688
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 3 cut(s) 246, 360, 854
BsaWI WCCGGW 9 cut(s) 207, 238, 382, 394, 524, 680, 686, 919, 973
Bsc4I CCNNNNNNNGG 7 cut(s) 228, 337, 577, 699, 729, 763, 839
Bse118I RCCGGY 2 cut(s) 212, 238
Bse3DI GCAATG 2 cut(s) 564, 715
Bse8I GATNNNNATC 1 cut(s) 688
BseAI TCCGGA 4 cut(s) 394, 680, 686, 973
BseBI CCWGG 3 cut(s) 53, 436, 811
BseDI CCNNGG 3 cut(s) 246, 360, 854
BseGI GGATG 3 cut(s) 48, 928, 1005
BseJI GATNNNNATC 1 cut(s) 688
BseLI CCNNNNNNNGG 7 cut(s) 228, 337, 577, 699, 729, 763, 839
BseMI GCAATG 2 cut(s) 564, 715
BseMII CTCAG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 124, 363
BseSI GKGCMC 1 cut(s) 470
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 5 cut(s) 62, 141, 234, 248, 620
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 8 cut(s) 47, 59, 216, 439, 452, 518, 581, 825
BshNI GGYRCC 3 cut(s) 346, 596, 636
BshTI ACCGGT 1 cut(s) 238
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 4 cut(s) 90, 470, 648, 919
BsiWI CGTACG 1 cut(s) 948
BslFI GGGAC 1 cut(s) 746
BslI CCNNNNNNNGG 7 cut(s) 228, 337, 577, 699, 729, 763, 839
BsmAI GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
BsmBI CGTCTC 4 cut(s) 178, 493, 544, 595
BsmFI GGGAC 1 cut(s) 746
BsnI GGCC 8 cut(s) 47, 59, 216, 439, 452, 518, 581, 825
Bsp1286I GDGCHC 4 cut(s) 90, 470, 648, 919
Bsp13I TCCGGA 4 cut(s) 394, 680, 686, 973
Bsp143I GATC 4 cut(s) 683, 689, 834, 925
BspANI GGCC 8 cut(s) 47, 59, 216, 439, 452, 518, 581, 825
BspCNI CTCAG 1 cut(s) 324
BspEI TCCGGA 4 cut(s) 394, 680, 686, 973
BspFNI CGCG 5 cut(s) 62, 141, 234, 248, 620
BspLI GGNNCC 9 cut(s) 252, 342, 348, 381, 582, 598, 638, 685, 691
BspPI GGATC 5 cut(s) 678, 684, 691, 697, 920
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 3 cut(s) 346, 596, 636
BsrBI CCGCTC 2 cut(s) 610, 987
BsrDI GCAATG 2 cut(s) 564, 715
BsrFI RCCGGY 2 cut(s) 212, 238
BssAI RCCGGY 2 cut(s) 212, 238
BssECI CCNNGG 3 cut(s) 246, 360, 854
BssMI GATC 4 cut(s) 683, 689, 834, 925
BssNI GRCGYC 1 cut(s) 597
BssSI CACGAG 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 854
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 3 cut(s) 53, 436, 811
Bst4CI ACNGT 3 cut(s) 120, 172, 880
Bst6I CTCTTC 2 cut(s) 71, 289
BstACI GRCGYC 1 cut(s) 597
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 3 cut(s) 450, 551, 915
BstDEI CTNAG 2 cut(s) 332, 462
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 3 cut(s) 48, 928, 1005
BstFNI CGCG 5 cut(s) 62, 141, 234, 248, 620
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 4 cut(s) 234, 448, 599, 622
BstKTI GATC 4 cut(s) 686, 692, 837, 928
BstMAI GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
BstMBI GATC 4 cut(s) 683, 689, 834, 925
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 7 cut(s) 78, 147, 254, 353, 362, 377, 445
BstNI CCWGG 3 cut(s) 53, 436, 811
BstSCI CCNGG 7 cut(s) 51, 221, 360, 434, 698, 762, 809
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 5 cut(s) 62, 141, 234, 248, 620
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 683, 689
BstYI RGATCY 2 cut(s) 683, 689
BsuRI GGCC 8 cut(s) 47, 59, 216, 439, 452, 518, 581, 825
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 947
BtsCI GGATG 3 cut(s) 48, 928, 1005
BtsIMutI CAGTG 1 cut(s) 885
Cac8I GCNNGC 3 cut(s) 450, 551, 915
CaiI CAGNNNCTG 2 cut(s) 118, 331
CfoI GCGC 4 cut(s) 234, 448, 599, 622
Cfr10I RCCGGY 2 cut(s) 212, 238
Cfr13I GGNCC 3 cut(s) 210, 236, 580
Cfr42I CCGCGG 1 cut(s) 249
CpoI CGGWCCG 2 cut(s) 210, 236
CseI GACGC 4 cut(s) 51, 430, 475, 526
Csp6I GTAC 4 cut(s) 805, 820, 876, 949
CspAI ACCGGT 1 cut(s) 238
CspI CGGWCCG 2 cut(s) 210, 236
CviAII CATG 3 cut(s) 82, 418, 508
CviQI GTAC 4 cut(s) 805, 820, 876, 949
DdeI CTNAG 2 cut(s) 332, 462
DinI GGCGCC 1 cut(s) 598
DpnI GATC 4 cut(s) 685, 691, 836, 927
DpnII GATC 4 cut(s) 683, 689, 834, 925
DrdI GACNNNNNNGTC 2 cut(s) 170, 536
DseDI GACNNNNNNGTC 2 cut(s) 170, 536
EaeI YGGCCR 3 cut(s) 214, 516, 823
Eam1104I CTCTTC 2 cut(s) 71, 289
EarI CTCTTC 2 cut(s) 71, 289
EciI GGCGGA 3 cut(s) 604, 783, 1005
Eco130I CCWWGG 1 cut(s) 854
Eco147I AGGCCT 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 210, 236
Eco72I CACGTG 1 cut(s) 907
EcoRII CCWGG 3 cut(s) 51, 434, 809
EcoT14I CCWWGG 1 cut(s) 854
EgeI GGCGCC 1 cut(s) 598
EheI GGCGCC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 854
Esp3I CGTCTC 4 cut(s) 178, 493, 544, 595
FaeI CATG 3 cut(s) 85, 421, 511
FaiI YATR 4 cut(s) 83, 419, 509, 983
FaqI GGGAC 1 cut(s) 746
FatI CATG 3 cut(s) 81, 417, 507
Fnu4HI GCNGC 4 cut(s) 60, 246, 618, 988
FokI GGATG 3 cut(s) 35, 935, 1012
Fsp4HI GCNGC 4 cut(s) 60, 246, 618, 988
GlaI GCGC 4 cut(s) 233, 447, 598, 621
GluI GCNGC 4 cut(s) 60, 246, 618, 988
GsuI CTGGAG 1 cut(s) 832
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 8 cut(s) 47, 59, 216, 439, 452, 518, 581, 825
HgaI GACGC 4 cut(s) 51, 430, 475, 526
HhaI GCGC 4 cut(s) 234, 448, 599, 622
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 3 cut(s) 85, 421, 511
Hin6I GCGC 4 cut(s) 232, 446, 597, 620
HinP1I GCGC 4 cut(s) 232, 446, 597, 620
HincII GTYRAC 1 cut(s) 1014
HindII GTYRAC 1 cut(s) 1014
HinfI GANTC 3 cut(s) 94, 759, 1010
HphI GGTGA 6 cut(s) 101, 251, 424, 514, 754, 837
Hpy166II GTNNAC 3 cut(s) 145, 468, 1014
Hpy188I TCNGA 4 cut(s) 27, 204, 658, 758
Hpy188III TCNNGA 4 cut(s) 395, 681, 687, 974
Hpy8I GTNNAC 3 cut(s) 145, 468, 1014
Hpy99I CGWCG 5 cut(s) 67, 356, 505, 517, 662
HpyAV CCTTC 3 cut(s) 209, 322, 723
HpyCH4III ACNGT 3 cut(s) 120, 172, 880
HpyCH4IV ACGT 3 cut(s) 906, 947, 1016
HpyCH4V TGCA 3 cut(s) 150, 468, 672
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 147, 254, 353, 362, 377, 445
HpyF3I CTNAG 2 cut(s) 332, 462
HpySE526I ACGT 3 cut(s) 906, 947, 1016
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 3 cut(s) 85, 421, 511
HspAI GCGC 4 cut(s) 232, 446, 597, 620
KasI GGCGCC 1 cut(s) 596
Kpn2I TCCGGA 4 cut(s) 394, 680, 686, 973
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 4 cut(s) 683, 689, 834, 925
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 9 cut(s) 85, 346, 376, 385, 397, 725, 910, 958, 976
LweI GCATC 2 cut(s) 924, 970
MaeII ACGT 3 cut(s) 906, 947, 1016
MaeIII GTNAC 2 cut(s) 98, 943
MalI GATC 4 cut(s) 685, 691, 836, 927
MbiI CCGCTC 2 cut(s) 610, 987
MboI GATC 4 cut(s) 683, 689, 834, 925
MboII GAAGA 9 cut(s) 40, 47, 88, 276, 279, 282, 285, 288, 757
MflI RGATCY 2 cut(s) 683, 689
MhlI GDGCHC 4 cut(s) 90, 470, 648, 919
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 597
MlyI GAGTC 2 cut(s) 768, 1019
MmeI TCCRAC 2 cut(s) 567, 681
MroI TCCGGA 4 cut(s) 394, 680, 686, 973
MseI TTAA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 7 cut(s) 53, 223, 362, 436, 700, 764, 811
MvaI CCWGG 3 cut(s) 53, 436, 811
MvnI CGCG 5 cut(s) 62, 141, 234, 248, 620
MwoI GCNNNNNNNGC 7 cut(s) 78, 147, 254, 353, 362, 377, 445
NarI GGCGCC 1 cut(s) 597
NciI CCSGG 4 cut(s) 223, 362, 700, 764
NdeII GATC 4 cut(s) 683, 689, 834, 925
NlaIII CATG 3 cut(s) 85, 421, 511
NlaIV GGNNCC 9 cut(s) 252, 342, 348, 381, 582, 598, 638, 685, 691
PceI AGGCCT 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 4 cut(s) 483, 497, 509, 654
PfeI GAWTC 1 cut(s) 94
Pfl23II CGTACG 1 cut(s) 948
PflFI GACNNNGTC 1 cut(s) 662
PfoI TCCNGGA 2 cut(s) 51, 809
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 4 cut(s) 61, 247, 619, 989
PleI GAGTC 2 cut(s) 767, 1018
PluTI GGCGCC 1 cut(s) 600
PmaCI CACGTG 1 cut(s) 907
PmlI CACGTG 1 cut(s) 907
PpsI GAGTC 2 cut(s) 767, 1018
Ppu21I YACGTR 1 cut(s) 907
Psp6I CCWGG 3 cut(s) 51, 434, 809
PspCI CACGTG 1 cut(s) 907
PspGI CCWGG 3 cut(s) 51, 434, 809
PspLI CGTACG 1 cut(s) 948
PspN4I GGNNCC 9 cut(s) 252, 342, 348, 381, 582, 598, 638, 685, 691
PspPI GGNCC 3 cut(s) 210, 236, 580
PstNI CAGNNNCTG 2 cut(s) 118, 331
PsuI RGATCY 2 cut(s) 683, 689
PsyI GACNNNGTC 1 cut(s) 662
RsaI GTAC 4 cut(s) 806, 821, 877, 950
RsaNI GTAC 4 cut(s) 805, 820, 876, 949
Rsr2I CGGWCCG 2 cut(s) 210, 236
RsrII CGGWCCG 2 cut(s) 210, 236
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 4 cut(s) 60, 246, 618, 988
Sau3AI GATC 4 cut(s) 683, 689, 834, 925
Sau96I GGNCC 3 cut(s) 210, 236, 580
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 2 cut(s) 768, 1019
ScrFI CCNGG 7 cut(s) 53, 223, 362, 436, 700, 764, 811
SduI GDGCHC 4 cut(s) 90, 470, 648, 919
SfaNI GCATC 2 cut(s) 924, 970
SfoI GGCGCC 1 cut(s) 598
Sfr303I CCGCGG 1 cut(s) 249
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 210, 236
Sse9I AATT 1 cut(s) 403
SseBI AGGCCT 1 cut(s) 439
SspDI GGCGCC 1 cut(s) 596
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 7 cut(s) 51, 221, 360, 434, 698, 762, 809
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 3 cut(s) 120, 172, 880
TaiI ACGT 3 cut(s) 909, 950, 1019
TaqI TCGA 3 cut(s) 477, 964, 1008
TaqII GACCGA 1 cut(s) 545
TasI AATT 1 cut(s) 403
TatI WGTACW 2 cut(s) 804, 875
TauI GCSGC 4 cut(s) 62, 248, 620, 990
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 1 cut(s) 885
TspDTI ATGAA 2 cut(s) 496, 553
TspRI CASTG 1 cut(s) 885
Tth111I GACNNNGTC 1 cut(s) 662
VneI GTGCAC 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 210, 236
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.