Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8389589.1

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

92 .. 1145

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8389589.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgacgcttgacttcaccaggcctaatgcgctggcctcaaaccctaagtgcaccgacatcgagttcagcgtctcgtccagctcgtcgttcatgtcgtcggccatcaccggagacaacagcgtctccaacggcaagctcggtctgttcattgccccgaatccggcccctgccgtctccggcgccaagcctccgctctccgccgcgccgtttaagaagcggtgccacgagcacgaccgctccgacgatgtctcctgcaagttatccggatccggatccgcttccgggtcgggcaagtgccattgctccaagagaaggaaaaatcgggtgaagaaaacaatccgagtcccggcgattagttcaaagattgccgatattccaccggacgagtactcctggagaaagtacggccagaagccgatcaaaggctcaccttacccaaggggttattacaagtgtagtacagtgagggggtgtccggcgagaaaacacgtggagcgagcaccggatgatccggcgatgctgattgtaacgtacgagggggagcatcgacacgctccggataatatgagcggcggagttgggatggtattcgagtcaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

200

Amino Acids

21.52

Weight (kDa)

9.51

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	2 cut(s)	179, 219
AccBSI	CCGCTC	3 cut(s)	193, 237, 570
AccII	CGCG	1 cut(s)	203
AccIII	TCCGGA	3 cut(s)	263, 269, 556
AciI	CCGC	8 cut(s)	191, 198, 201, 217, 235, 276, 570, 573
AclWI	GGATC	5 cut(s)	261, 267, 274, 280, 503
AcoI	YGGCCR	2 cut(s)	99, 406
AcvI	CACGTG	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	4 cut(s)	389, 404, 460, 533
AfiI	CCNNNNNNNGG	5 cut(s)	160, 282, 312, 346, 422
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	1 cut(s)	360
AjnI	CCWGG	2 cut(s)	17, 392
AluBI	AGCT	2 cut(s)	81, 136
AluI	AGCT	2 cut(s)	81, 136
Alw21I	GWGCWC	3 cut(s)	53, 231, 502
Alw26I	GTCTC	5 cut(s)	76, 105, 127, 178, 253
Alw44I	GTGCAC	1 cut(s)	49
AlwI	GGATC	5 cut(s)	261, 267, 274, 280, 503
Aor13HI	TCCGGA	3 cut(s)	263, 269, 556
AoxI	GGCC	5 cut(s)	20, 33, 99, 162, 406
ApaLI	GTGCAC	1 cut(s)	49
AspLEI	GCGC	3 cut(s)	31, 182, 205
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	283, 347
AsuHPI	GGTGA	4 cut(s)	7, 97, 337, 420
BaeGI	GKGCMC	1 cut(s)	53
BamHI	GGATCC	2 cut(s)	266, 272
BanI	GGYRCC	2 cut(s)	179, 219
BauI	CACGAG	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	490
Bbv12I	GWGCWC	3 cut(s)	53, 231, 502
BccI	CCATC	2 cut(s)	110, 577
BceAI	ACGGC	4 cut(s)	145, 155, 190, 421
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	2 cut(s)	19, 394
BcnI	CCSGG	2 cut(s)	283, 347
BcoDI	GTCTC	5 cut(s)	76, 105, 127, 178, 253
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	2 cut(s)	201, 571
BlsI	GCNGC	2 cut(s)	202, 572
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	4 cut(s)	19, 283, 347, 394
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	5 cut(s)	165, 181, 221, 268, 274
BmrFI	CCNGG	4 cut(s)	19, 283, 347, 394
BmsI	GCATC	2 cut(s)	507, 553
BpmI	CTGGAG	1 cut(s)	415
BpuMI	CCSGG	2 cut(s)	283, 347
BsaAI	YACGTR	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	6 cut(s)	107, 263, 269, 379, 502, 556
BsaXI	ACNNNNNCTCC	8 cut(s)	107, 137, 221, 233, 251, 263, 374, 404
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 282, 312, 346, 422
Bse3DI	GCAATG	2 cut(s)	147, 298
Bse8I	GATNNNNATC	1 cut(s)	271
BseAI	TCCGGA	3 cut(s)	263, 269, 556
BseBI	CCWGG	2 cut(s)	19, 394
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	511, 588
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	5 cut(s)	160, 282, 312, 346, 422
BseMI	GCAATG	2 cut(s)	147, 298
BseSI	GKGCMC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	5 cut(s)	22, 35, 101, 164, 408
BshNI	GGYRCC	2 cut(s)	179, 219
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	3 cut(s)	53, 231, 502
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	5 cut(s)	160, 282, 312, 346, 422
BsmAI	GTCTC	5 cut(s)	76, 105, 127, 178, 253
BsmBI	CGTCTC	3 cut(s)	76, 127, 178
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	5 cut(s)	22, 35, 101, 164, 408
Bsp1286I	GDGCHC	3 cut(s)	53, 231, 502
Bsp13I	TCCGGA	3 cut(s)	263, 269, 556
Bsp143I	GATC	4 cut(s)	266, 272, 417, 508
BspACI	CCGC	8 cut(s)	191, 198, 201, 217, 235, 276, 570, 573
BspANI	GGCC	5 cut(s)	22, 35, 101, 164, 408
BspEI	TCCGGA	3 cut(s)	263, 269, 556
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	5 cut(s)	165, 181, 221, 268, 274
BspPI	GGATC	5 cut(s)	261, 267, 274, 280, 503
BspT107I	GGYRCC	2 cut(s)	179, 219
BsrBI	CCGCTC	3 cut(s)	193, 237, 570
BsrDI	GCAATG	2 cut(s)	147, 298
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	4 cut(s)	266, 272, 417, 508
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	19, 394
Bst4CI	ACNGT	1 cut(s)	463
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	3 cut(s)	33, 134, 498
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	511, 588
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	3 cut(s)	31, 182, 205
BstKTI	GATC	4 cut(s)	269, 275, 420, 511
BstMAI	GTCTC	5 cut(s)	76, 105, 127, 178, 253
BstMBI	GATC	4 cut(s)	266, 272, 417, 508
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	2 cut(s)	19, 394
BstSCI	CCNGG	4 cut(s)	17, 281, 345, 392
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	266, 272
BstYI	RGATCY	2 cut(s)	266, 272
BsuRI	GGCC	5 cut(s)	22, 35, 101, 164, 408
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	511, 588
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	3 cut(s)	33, 134, 498
CfoI	GCGC	3 cut(s)	31, 182, 205
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	3 cut(s)	13, 58, 109
Csp6I	GTAC	4 cut(s)	388, 403, 459, 532
CviAII	CATG	1 cut(s)	91
CviQI	GTAC	4 cut(s)	388, 403, 459, 532
DdeI	CTNAG	1 cut(s)	45
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	268, 274, 419, 510
DpnII	GATC	4 cut(s)	266, 272, 417, 508
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	99, 406
EciI	GGCGGA	2 cut(s)	187, 588
Eco130I	CCWWGG	1 cut(s)	437
Eco147I	AGGCCT	1 cut(s)	22
Eco72I	CACGTG	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	17, 392
EcoT14I	CCWWGG	1 cut(s)	437
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	437
Esp3I	CGTCTC	3 cut(s)	76, 127, 178
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 566
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	201, 571
FokI	GGATG	2 cut(s)	518, 595
Fsp4HI	GCNGC	2 cut(s)	201, 571
GlaI	GCGC	3 cut(s)	30, 181, 204
GluI	GCNGC	2 cut(s)	201, 571
GsuI	CTGGAG	1 cut(s)	415
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	22, 35, 101, 164, 408
HgaI	GACGC	3 cut(s)	13, 58, 109
HhaI	GCGC	3 cut(s)	31, 182, 205
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	3 cut(s)	29, 180, 203
HinP1I	GCGC	3 cut(s)	29, 180, 203
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HinfI	GANTC	3 cut(s)	157, 342, 593
HphI	GGTGA	4 cut(s)	7, 97, 337, 420
Hpy166II	GTNNAC	2 cut(s)	51, 597
Hpy188I	TCNGA	2 cut(s)	241, 341
Hpy188III	TCNNGA	3 cut(s)	264, 270, 557
Hpy8I	GTNNAC	2 cut(s)	51, 597
Hpy99I	CGWCG	3 cut(s)	88, 100, 245
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	3 cut(s)	489, 530, 599
HpyCH4V	TGCA	2 cut(s)	51, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	3 cut(s)	489, 530, 599
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	3 cut(s)	29, 180, 203
KasI	GGCGCC	1 cut(s)	179
Kpn2I	TCCGGA	3 cut(s)	263, 269, 556
Kzo9I	GATC	4 cut(s)	266, 272, 417, 508
LmnI	GCTCC	5 cut(s)	242, 308, 493, 541, 559
LweI	GCATC	2 cut(s)	507, 553
MaeII	ACGT	3 cut(s)	489, 530, 599
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	4 cut(s)	268, 274, 419, 510
MbiI	CCGCTC	3 cut(s)	193, 237, 570
MboI	GATC	4 cut(s)	266, 272, 417, 508
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	2 cut(s)	266, 272
MhlI	GDGCHC	3 cut(s)	53, 231, 502
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	351, 602
MmeI	TCCRAC	2 cut(s)	150, 264
MnlI	CCTC	4 cut(s)	46, 198, 459, 529
MroI	TCCGGA	3 cut(s)	263, 269, 556
MseI	TTAA	1 cut(s)	210
MspR9I	CCNGG	4 cut(s)	19, 283, 347, 394
MvaI	CCWGG	2 cut(s)	19, 394
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	28
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	283, 347
NdeII	GATC	4 cut(s)	266, 272, 417, 508
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	5 cut(s)	165, 181, 221, 268, 274
PceI	AGGCCT	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	4 cut(s)	66, 80, 92, 237
PfeI	GAWTC	1 cut(s)	157
Pfl23II	CGTACG	1 cut(s)	531
PflFI	GACNNNGTC	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	202, 572
PleI	GAGTC	2 cut(s)	350, 601
PluTI	GGCGCC	1 cut(s)	183
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	2 cut(s)	350, 601
Ppu21I	YACGTR	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	17, 392
PspCI	CACGTG	1 cut(s)	490
PspGI	CCWGG	2 cut(s)	17, 392
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	5 cut(s)	165, 181, 221, 268, 274
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	266, 272
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	4 cut(s)	389, 404, 460, 533
RsaNI	GTAC	4 cut(s)	388, 403, 459, 532
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	201, 571
Sau3AI	GATC	4 cut(s)	266, 272, 417, 508
Sau96I	GGNCC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	2 cut(s)	351, 602
ScrFI	CCNGG	4 cut(s)	19, 283, 347, 394
SduI	GDGCHC	3 cut(s)	53, 231, 502
SetI	ASST	6 cut(s)	83, 138, 433, 492, 533, 602
SfaNI	GCATC	2 cut(s)	507, 553
SfoI	GGCGCC	1 cut(s)	181
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	8 cut(s)	191, 198, 201, 217, 235, 276, 570, 573
SspDI	GGCGCC	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	4 cut(s)	17, 281, 345, 392
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	3 cut(s)	492, 533, 602
TaqI	TCGA	3 cut(s)	60, 547, 591
TaqII	GACCGA	1 cut(s)	128
TatI	WGTACW	2 cut(s)	387, 458
TauI	GCSGC	2 cut(s)	203, 573
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	468
TspDTI	ATGAA	2 cut(s)	79, 136
TspRI	CASTG	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.