Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011133.1

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Forward (+)

3580 .. 4718

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011133.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atggcaattgatctcgttaggttctccaagatcgacgatcggacggccatggaagaggccgcctccgccggcttacagagcatggagcatctcatccgtgtcttgtccagtcaaaccccgtctcacaacaacctcgactgccgtgaaatcaccgacttcaccgtcgccaagttcaagcagttcatctccgtcttgaaccggaccggtcacgcccgtttccgccgcggaccggctaagcaacctagtgaatctaccaccacctcttctcctcctcctccacctcctgccaacccggccccaccaaagcctcaggttactttgtcttttgaaaccggaaatcccaataccaataccaatacaatcacccattccaagtccaaagactgcctcaccttatctcctcccatgtccacaacgtcgtcgtttctttcttccgtcaccaccggagacggcagcgtttccaacggcaaagttttctcctcagctgccgtacccccggcgccggccttctctgccggtaaacccccgctctcccaatcccaccgtaaacgctgccacgacgagctcgcaaccaaaacgacatcgtccggtcgatgccattgttctaaaagaagaaaatccaaggtgaagaggacagtccgagtgccggcgattagttcgaaaatcgccgacataccttccgacgagttttcgtggaggaagtacggtcaaaagccgatcaagggctccccatatccacgaggctattataagtgtagtagcgtgcgagggtgtccagcaagaaaacacgtggagcgcgcgcaagacgaccccaccatgcttatcgttacctacgaagcggagcaccgtcaccctcaccctcagcagtcaaactctgtcccggccggtgctgtcggactcgtgttccaatccgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

305

Amino Acids

33.13

Weight (kDa)

9.91

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	529
AccII	CGCG	3 cut(s)	225, 798, 800
AciI	CCGC	8 cut(s)	60, 66, 220, 223, 225, 527, 839, 912
AcoI	YGGCCR	2 cut(s)	45, 882
AcvI	CACGTG	1 cut(s)	790
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	2 cut(s)	492, 704
AfiI	CCNNNNNNNGG	4 cut(s)	229, 502, 646, 722
AflIII	ACRYGT	1 cut(s)	787
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	175, 196, 329
AluBI	AGCT	2 cut(s)	485, 565
AluI	AGCT	2 cut(s)	485, 565
Alw21I	GWGCWC	2 cut(s)	567, 846
Alw26I	GTCTC	2 cut(s)	126, 441
AoxI	GGCC	5 cut(s)	45, 57, 294, 504, 882
ApeKI	GCWGC	3 cut(s)	453, 485, 552
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	4 cut(s)	502, 798, 800, 802
AspS9I	GGNCC	3 cut(s)	201, 227, 295
AsuC2I	CCSGG	3 cut(s)	293, 497, 881
AsuHPI	GGTGA	8 cut(s)	142, 151, 355, 382, 430, 637, 842, 848
AsuII	TTCGAA	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	201, 227
AxyI	CCTNAGG	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	2 cut(s)	567, 728
BauI	CACGAG	2 cut(s)	738, 899
BbrPI	CACGTG	1 cut(s)	790
Bbv12I	GWGCWC	2 cut(s)	567, 846
BbvCI	CCTCAGC	2 cut(s)	481, 861
BbvI	GCAGC	3 cut(s)	465, 472, 539
BceAI	ACGGC	5 cut(s)	60, 126, 466, 473, 481
BcnI	CCSGG	3 cut(s)	293, 497, 881
BcoDI	GTCTC	2 cut(s)	126, 441
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	503
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	5 cut(s)	60, 223, 454, 486, 553
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	5 cut(s)	61, 224, 455, 487, 554
Bme1390I	CCNGG	3 cut(s)	293, 497, 881
Bme18I	GGWCC	2 cut(s)	201, 227
BmgT120I	GGNCC	3 cut(s)	201, 227, 295
BmiI	GGNNCC	3 cut(s)	297, 501, 727
BmrFI	CCNGG	3 cut(s)	293, 497, 881
BmsI	GCATC	2 cut(s)	97, 584
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu10I	CCTNAGC	2 cut(s)	481, 861
Bpu1102I	GCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	659
BpuMI	CCSGG	3 cut(s)	293, 497, 881
BsaAI	YACGTR	1 cut(s)	790
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	4 cut(s)	48, 223, 495, 621
BsaWI	WCCGGW	5 cut(s)	198, 203, 332, 443, 587
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 382, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 502, 646, 722
Bse118I	RCCGGY	7 cut(s)	68, 203, 229, 502, 515, 646, 884
Bse1I	ACTGG	1 cut(s)	108
Bse21I	CCTNAGG	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	48, 223, 495, 621
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	229, 502, 646, 722
BseMII	CTCAG	3 cut(s)	323, 495, 875
BseNI	ACTGG	1 cut(s)	108
BsePI	GCGCGC	2 cut(s)	796, 798
BseRI	GAGGAG	5 cut(s)	258, 261, 264, 390, 469
BseX3I	CGGCCG	1 cut(s)	882
BseXI	GCAGC	3 cut(s)	465, 472, 539
Bsh1236I	CGCG	3 cut(s)	225, 798, 800
Bsh1285I	CGRYCG	3 cut(s)	40, 592, 885
BshFI	GGCC	5 cut(s)	47, 59, 296, 506, 884
BshNI	GGYRCC	1 cut(s)	499
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	3 cut(s)	40, 592, 885
BsiHKAI	GWGCWC	2 cut(s)	567, 846
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	4 cut(s)	229, 502, 646, 722
BsmAI	GTCTC	2 cut(s)	126, 441
BsmBI	CGTCTC	2 cut(s)	126, 441
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	5 cut(s)	47, 59, 296, 506, 884
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	567, 728, 846
Bsp143I	GATC	4 cut(s)	10, 30, 37, 717
Bsp1720I	GCTNAGC	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	8 cut(s)	60, 66, 220, 223, 225, 527, 839, 912
BspANI	GGCC	5 cut(s)	47, 59, 296, 506, 884
BspCNI	CTCAG	3 cut(s)	322, 494, 874
BspFNI	CGCG	3 cut(s)	225, 798, 800
BspLI	GGNNCC	3 cut(s)	297, 501, 727
BspT104I	TTCGAA	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	499
BsrBI	CCGCTC	1 cut(s)	529
BsrFI	RCCGGY	7 cut(s)	68, 203, 229, 502, 515, 646, 884
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	7 cut(s)	68, 203, 229, 502, 515, 646, 884
BssECI	CCNNGG	4 cut(s)	48, 223, 495, 621
BssHII	GCGCGC	2 cut(s)	796, 798
BssMI	GATC	4 cut(s)	10, 30, 37, 717
BssNI	GRCGYC	1 cut(s)	500
BssSI	CACGAG	2 cut(s)	738, 899
BssT1I	CCWWGG	2 cut(s)	48, 621
Bst2BI	CACGAG	2 cut(s)	738, 899
Bst4CI	ACNGT	5 cut(s)	163, 545, 637, 707, 848
Bst6I	CTCTTC	3 cut(s)	48, 268, 623
BstACI	GRCGYC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	790
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	7 cut(s)	70, 504, 567, 648, 764, 798, 800
BstDEI	CTNAG	4 cut(s)	234, 309, 481, 861
BstDSI	CCRYGG	2 cut(s)	48, 223
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	3 cut(s)	225, 798, 800
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	4 cut(s)	502, 798, 800, 802
BstKTI	GATC	4 cut(s)	13, 33, 40, 720
BstMAI	GTCTC	2 cut(s)	126, 441
BstMBI	GATC	4 cut(s)	10, 30, 37, 717
BstMCI	CGRYCG	3 cut(s)	40, 592, 885
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 78, 293, 512
BstSCI	CCNGG	3 cut(s)	291, 495, 879
BstUI	CGCG	3 cut(s)	225, 798, 800
BstV1I	GCAGC	3 cut(s)	465, 472, 539
BstZI	CGGCCG	1 cut(s)	882
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	47, 59, 296, 506, 884
BtgI	CCRYGG	2 cut(s)	48, 223
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	7 cut(s)	70, 504, 567, 648, 764, 798, 800
CfoI	GCGC	4 cut(s)	502, 798, 800, 802
Cfr10I	RCCGGY	7 cut(s)	68, 203, 229, 502, 515, 646, 884
Cfr13I	GGNCC	3 cut(s)	201, 227, 295
Cfr42I	CCGCGG	1 cut(s)	226
CpoI	CGGWCCG	2 cut(s)	201, 227
Csp6I	GTAC	2 cut(s)	491, 703
CspAI	ACCGGT	1 cut(s)	203
CspI	CGGWCCG	2 cut(s)	201, 227
CviAII	CATG	4 cut(s)	49, 82, 406, 817
CviQI	GTAC	2 cut(s)	491, 703
DdeI	CTNAG	4 cut(s)	234, 309, 481, 861
DinI	GGCGCC	1 cut(s)	501
DpnI	GATC	4 cut(s)	12, 32, 39, 719
DpnII	GATC	4 cut(s)	10, 30, 37, 717
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	45, 882
EagI	CGGCCG	1 cut(s)	882
Eam1104I	CTCTTC	3 cut(s)	48, 268, 623
EarI	CTCTTC	3 cut(s)	48, 268, 623
EciI	GGCGGA	3 cut(s)	55, 209, 901
Ecl136II	GAGCTC	1 cut(s)	565
EclXI	CGGCCG	1 cut(s)	882
Eco130I	CCWWGG	2 cut(s)	48, 621
Eco24I	GRGCYC	2 cut(s)	567, 728
Eco47I	GGWCC	2 cut(s)	201, 227
Eco52I	CGGCCG	1 cut(s)	882
Eco53kI	GAGCTC	1 cut(s)	565
Eco72I	CACGTG	1 cut(s)	790
Eco81I	CCTNAGG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	48, 621
EcoT38I	GRGCYC	2 cut(s)	567, 728
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	48, 621
Esp3I	CGTCTC	2 cut(s)	126, 441
FaeI	CATG	4 cut(s)	52, 85, 409, 820
FaiI	YATR	7 cut(s)	50, 83, 407, 674, 733, 750, 818
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	4 cut(s)	48, 81, 405, 816
FauI	CCCGC	1 cut(s)	534
Fnu4HI	GCNGC	5 cut(s)	60, 223, 454, 486, 553
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	567, 728
Fsp4HI	GCNGC	5 cut(s)	60, 223, 454, 486, 553
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	4 cut(s)	501, 797, 799, 801
GluI	GCNGC	5 cut(s)	60, 223, 454, 486, 553
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	5 cut(s)	47, 59, 296, 506, 884
HhaI	GCGC	4 cut(s)	502, 798, 800, 802
Hin1I	GRCGYC	1 cut(s)	500
Hin1II	CATG	4 cut(s)	52, 85, 409, 820
Hin6I	GCGC	4 cut(s)	500, 796, 798, 800
HinP1I	GCGC	4 cut(s)	500, 796, 798, 800
HinfI	GANTC	2 cut(s)	248, 897
HphI	GGTGA	8 cut(s)	142, 151, 355, 382, 430, 637, 842, 848
Hpy166II	GTNNAC	3 cut(s)	411, 521, 548
Hpy188I	TCNGA	4 cut(s)	42, 641, 682, 896
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	3 cut(s)	411, 521, 548
Hpy99I	CGWCG	6 cut(s)	38, 167, 421, 424, 563, 686
HpyAV	CCTTC	2 cut(s)	517, 687
HpyCH4III	ACNGT	5 cut(s)	163, 545, 637, 707, 848
HpyCH4IV	ACGT	2 cut(s)	416, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 78, 293, 512
HpyF3I	CTNAG	4 cut(s)	234, 309, 481, 861
HpySE526I	ACGT	2 cut(s)	416, 789
Hsp92I	GRCGYC	1 cut(s)	500
Hsp92II	CATG	4 cut(s)	52, 85, 409, 820
HspAI	GCGC	4 cut(s)	500, 796, 798, 800
KasI	GGCGCC	1 cut(s)	499
KroI	GCCGGC	3 cut(s)	68, 502, 646
KroNI	GCCGGC	3 cut(s)	70, 504, 648
KspI	CCGCGG	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	10, 30, 37, 717
LmnI	GCTCC	4 cut(s)	85, 731, 793, 841
Lsp1109I	GCAGC	3 cut(s)	465, 472, 539
LweI	GCATC	2 cut(s)	97, 584
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	416, 789
MaeIII	GTNAC	5 cut(s)	206, 313, 436, 826, 848
MalI	GATC	4 cut(s)	12, 32, 39, 719
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	4 cut(s)	10, 30, 37, 717
MboII	GAAGA	5 cut(s)	65, 255, 423, 624, 640
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	3 cut(s)	567, 728, 846
MluCI	AATT	1 cut(s)	6
Mly113I	GGCGCC	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	891
MmeI	TCCRAC	3 cut(s)	486, 705, 874
MroNI	GCCGGC	3 cut(s)	68, 502, 646
MspA1I	CMGCKG	2 cut(s)	225, 485
MspR9I	CCNGG	3 cut(s)	293, 497, 881
MunI	CAATTG	1 cut(s)	6
MvnI	CGCG	3 cut(s)	225, 798, 800
MwoI	GCNNNNNNNGC	4 cut(s)	65, 78, 293, 512
NaeI	GCCGGC	3 cut(s)	70, 504, 648
NarI	GGCGCC	1 cut(s)	500
NciI	CCSGG	3 cut(s)	293, 497, 881
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	4 cut(s)	10, 30, 37, 717
NgoMIV	GCCGGC	3 cut(s)	68, 502, 646
NlaIII	CATG	4 cut(s)	52, 85, 409, 820
NlaIV	GGNNCC	3 cut(s)	297, 501, 727
NmuCI	GTSAC	3 cut(s)	206, 436, 848
NspV	TTCGAA	1 cut(s)	659
PauI	GCGCGC	2 cut(s)	796, 798
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PdiI	GCCGGC	3 cut(s)	70, 504, 648
PfeI	GAWTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	583
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	61, 224, 455, 487, 554
Ple19I	CGATCG	1 cut(s)	40
PleI	GAGTC	1 cut(s)	891
PluTI	GGCGCC	1 cut(s)	503
PmaCI	CACGTG	1 cut(s)	790
PmlI	CACGTG	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	891
Ppu21I	YACGTR	1 cut(s)	790
PsiI	TTATAA	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	567
PspCI	CACGTG	1 cut(s)	790
PspN4I	GGNNCC	3 cut(s)	297, 501, 727
PspPI	GGNCC	3 cut(s)	201, 227, 295
PsyI	GACNNNGTC	1 cut(s)	583
PteI	GCGCGC	2 cut(s)	796, 798
PvuI	CGATCG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	492, 704
RsaNI	GTAC	2 cut(s)	491, 703
Rsr2I	CGGWCCG	2 cut(s)	201, 227
RsrII	CGGWCCG	2 cut(s)	201, 227
SacI	GAGCTC	1 cut(s)	567
SacII	CCGCGG	1 cut(s)	226
SatI	GCNGC	5 cut(s)	60, 223, 454, 486, 553
Sau3AI	GATC	4 cut(s)	10, 30, 37, 717
Sau96I	GGNCC	3 cut(s)	201, 227, 295
SchI	GAGTC	1 cut(s)	891
ScrFI	CCNGG	3 cut(s)	293, 497, 881
SduI	GDGCHC	3 cut(s)	567, 728, 846
SfaNI	GCATC	2 cut(s)	97, 584
SfoI	GGCGCC	1 cut(s)	501
Sfr303I	CCGCGG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	659
SgrBI	CCGCGG	1 cut(s)	226
SinI	GGWCC	2 cut(s)	201, 227
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	8 cut(s)	60, 66, 220, 223, 225, 527, 839, 912
SspDI	GGCGCC	1 cut(s)	499
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	3 cut(s)	291, 495, 879
StyI	CCWWGG	2 cut(s)	48, 621
TaaI	ACNGT	5 cut(s)	163, 545, 637, 707, 848
TaiI	ACGT	2 cut(s)	419, 792
TaqI	TCGA	4 cut(s)	33, 135, 592, 659
TasI	AATT	1 cut(s)	6
TauI	GCSGC	2 cut(s)	62, 225
TfiI	GAWTC	1 cut(s)	248
TseFI	GTSAC	3 cut(s)	206, 436, 848
TseI	GCWGC	3 cut(s)	453, 485, 552
Tsp45I	GTSAC	3 cut(s)	206, 436, 848
TspDTI	ATGAA	1 cut(s)	172
TspGWI	ACGGA	3 cut(s)	86, 178, 424
Tth111I	GACNNNGTC	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	201, 227
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.