Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

11995374 .. 11997643

Gene Structure 2270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCAATTGATCTCGTTAGGTTCTCCAAGATCGACGATCGGACGGCCATGGAAGAGGCCGCCTCCGCCGGCTTACAGAGCATGGAGCATCTCATCCGTGTCTTGTCCAGTCAAACCCCGTCTCACAACAACCTCGACTGCCGTGAAATCACCGACCTCACCGTCGCCAAGTTCAAGCAGTTCATCTCCGTCTTGAACCGGACCGGTCACGCCCGCTTCCGCCGCGGACCGGCCAAGCAACCTAGTGAATCTACCACCACCTCTTCTCCTCCTCCCCCACCTCCACCTCCTGCCAACCCGGTCCCACCAAAGCCTCAGGTTACTTTGTCTTTTGAAACCGGAAATCCTAATACCAATACCAATACAAACACCAATTCCAAGTCCAAAGACTGCCTCACCTTATCTCCTCCCATGTCCACAACGTCGTCGTTTCTTTCTTCAGTCACCACCGGAGACGGCAGCGTTTCCAACGGCAAAGTTTTCTCTTCAGCTGCCGTACCCCAGGCGCCGGCCTTCTCAGCCGGCAAACCCCCGCTCTCCCAATCCCACCGGAAACGCTGCCACAACGAGCTCGCAACCAAAACGACATCGTCCGGTCGATGCCATTGTTCTAAAAGAAGAAAATCCAAGGTGAAGAGGACAGTCCGAGTACCGGCGATTAGTTCGAAAATCGCCGACATACCTTCCGACGAGTTTTCGTGGAGGAAGTACGGCCAAAAGCCAATCAAGGGCTCCCCATACCCACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

249

Amino Acids

26.97

Weight (kDa)

10.21

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	184 - 226	1.3e-17	Plant zinc cluster domain
WRKY	PF03106	230 - 249	3.3e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	535
AccII	CGCG	1 cut(s)	225
AciI	CCGC	7 cut(s)	60, 66, 214, 220, 223, 225, 533
AcoI	YGGCCR	3 cut(s)	45, 231, 712
AcuI	CTGAAG	2 cut(s)	423, 471
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	3 cut(s)	498, 651, 710
AfiI	CCNNNNNNNGG	4 cut(s)	229, 508, 652, 728
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	175, 196, 335
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	491, 571
AluI	AGCT	2 cut(s)	491, 571
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	126, 447
AoxI	GGCC	5 cut(s)	45, 57, 231, 510, 712
ApeKI	GCWGC	3 cut(s)	459, 491, 558
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	3 cut(s)	201, 227, 301
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	5 cut(s)	142, 151, 388, 436, 643
AsuII	TTCGAA	1 cut(s)	665
AvaII	GGWCC	3 cut(s)	201, 227, 301
AxyI	CCTNAGG	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	2 cut(s)	573, 734
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	471, 478, 545
BceAI	ACGGC	6 cut(s)	60, 126, 472, 479, 487, 727
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	126, 447
BfaI	CTAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	509
BisI	GCNGC	5 cut(s)	60, 223, 460, 492, 559
BlsI	GCNGC	5 cut(s)	61, 224, 461, 493, 560
Bme1390I	CCNGG	2 cut(s)	299, 503
Bme18I	GGWCC	3 cut(s)	201, 227, 301
BmgT120I	GGNCC	3 cut(s)	201, 227, 301
BmiI	GGNNCC	3 cut(s)	303, 507, 733
BmrFI	CCNGG	2 cut(s)	299, 503
BmsI	GCATC	2 cut(s)	97, 590
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu14I	TTCGAA	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	5 cut(s)	48, 223, 501, 627, 743
BsaWI	WCCGGW	6 cut(s)	198, 203, 338, 449, 549, 593
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 388, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 508, 652, 728
Bse118I	RCCGGY	6 cut(s)	68, 203, 229, 508, 521, 652
Bse1I	ACTGG	1 cut(s)	108
Bse21I	CCTNAGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	5 cut(s)	48, 223, 501, 627, 743
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	229, 508, 652, 728
BseMII	CTCAG	2 cut(s)	329, 531
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	3 cut(s)	258, 261, 396
BseXI	GCAGC	3 cut(s)	471, 478, 545
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	2 cut(s)	40, 598
BshFI	GGCC	5 cut(s)	47, 59, 233, 512, 714
BshNI	GGYRCC	1 cut(s)	505
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	40, 598
BsiHKAI	GWGCWC	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	4 cut(s)	229, 508, 652, 728
BsmAI	GTCTC	2 cut(s)	126, 447
BsmBI	CGTCTC	2 cut(s)	126, 447
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	5 cut(s)	47, 59, 233, 512, 714
Bsp119I	TTCGAA	1 cut(s)	665
Bsp1286I	GDGCHC	2 cut(s)	573, 734
Bsp143I	GATC	3 cut(s)	10, 30, 37
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	7 cut(s)	60, 66, 214, 220, 223, 225, 533
BspANI	GGCC	5 cut(s)	47, 59, 233, 512, 714
BspCNI	CTCAG	2 cut(s)	328, 530
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	303, 507, 733
BspT104I	TTCGAA	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	505
BsrBI	CCGCTC	1 cut(s)	535
BsrFI	RCCGGY	6 cut(s)	68, 203, 229, 508, 521, 652
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	6 cut(s)	68, 203, 229, 508, 521, 652
BssECI	CCNNGG	5 cut(s)	48, 223, 501, 627, 743
BssMI	GATC	3 cut(s)	10, 30, 37
BssNI	GRCGYC	1 cut(s)	506
BssT1I	CCWWGG	2 cut(s)	48, 627
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	3 cut(s)	163, 643, 747
Bst6I	CTCTTC	4 cut(s)	48, 268, 490, 629
BstACI	GRCGYC	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	5 cut(s)	70, 214, 510, 523, 573
BstDEI	CTNAG	2 cut(s)	315, 517
BstDSI	CCRYGG	3 cut(s)	48, 223, 743
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	13, 33, 40
BstMAI	GTCTC	2 cut(s)	126, 447
BstMBI	GATC	3 cut(s)	10, 30, 37
BstMCI	CGRYCG	2 cut(s)	40, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 78, 222, 518
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	297, 501
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	471, 478, 545
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	5 cut(s)	47, 59, 233, 512, 714
BtgI	CCRYGG	3 cut(s)	48, 223, 743
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	5 cut(s)	70, 214, 510, 523, 573
CfoI	GCGC	1 cut(s)	508
Cfr10I	RCCGGY	6 cut(s)	68, 203, 229, 508, 521, 652
Cfr13I	GGNCC	3 cut(s)	201, 227, 301
Cfr42I	CCGCGG	1 cut(s)	226
CpoI	CGGWCCG	2 cut(s)	201, 227
Csp6I	GTAC	3 cut(s)	497, 650, 709
CspAI	ACCGGT	1 cut(s)	203
CspI	CGGWCCG	2 cut(s)	201, 227
CviAII	CATG	3 cut(s)	49, 82, 412
CviQI	GTAC	3 cut(s)	497, 650, 709
DdeI	CTNAG	2 cut(s)	315, 517
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	3 cut(s)	12, 32, 39
DpnII	GATC	3 cut(s)	10, 30, 37
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	3 cut(s)	45, 231, 712
Eam1104I	CTCTTC	4 cut(s)	48, 268, 490, 629
EarI	CTCTTC	4 cut(s)	48, 268, 490, 629
EciI	GGCGGA	2 cut(s)	55, 209
Ecl136II	GAGCTC	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	48, 627
Eco24I	GRGCYC	2 cut(s)	573, 734
Eco47I	GGWCC	3 cut(s)	201, 227, 301
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	2 cut(s)	423, 471
Eco81I	CCTNAGG	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	48, 627
EcoT38I	GRGCYC	2 cut(s)	573, 734
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	48, 627
Esp3I	CGTCTC	2 cut(s)	126, 447
FaeI	CATG	3 cut(s)	52, 85, 415
FaiI	YATR	5 cut(s)	50, 83, 413, 680, 739
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	48, 81, 411
FauI	CCCGC	2 cut(s)	221, 540
Fnu4HI	GCNGC	5 cut(s)	60, 223, 460, 492, 559
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	573, 734
Fsp4HI	GCNGC	5 cut(s)	60, 223, 460, 492, 559
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	5 cut(s)	60, 223, 460, 492, 559
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	5 cut(s)	47, 59, 233, 512, 714
HhaI	GCGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	3 cut(s)	52, 85, 415
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	5 cut(s)	142, 151, 388, 436, 643
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	3 cut(s)	42, 647, 688
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	5 cut(s)	38, 167, 427, 430, 692
HpyAV	CCTTC	2 cut(s)	523, 693
HpyCH4III	ACNGT	3 cut(s)	163, 643, 747
HpyCH4IV	ACGT	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 78, 222, 518
HpyF3I	CTNAG	2 cut(s)	315, 517
HpySE526I	ACGT	1 cut(s)	422
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	3 cut(s)	52, 85, 415
HspAI	GCGC	1 cut(s)	506
KasI	GGCGCC	1 cut(s)	505
KroI	GCCGGC	3 cut(s)	68, 508, 521
KroNI	GCCGGC	3 cut(s)	70, 510, 523
KspI	CCGCGG	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	10, 30, 37
LmnI	GCTCC	2 cut(s)	85, 737
Lsp1109I	GCAGC	3 cut(s)	471, 478, 545
LweI	GCATC	2 cut(s)	97, 590
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	206, 319, 442
MalI	GATC	3 cut(s)	12, 32, 39
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	3 cut(s)	10, 30, 37
MboII	GAAGA	6 cut(s)	65, 255, 429, 477, 630, 646
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	573, 734
MluCI	AATT	2 cut(s)	6, 373
Mly113I	GGCGCC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	492, 711
MroNI	GCCGGC	3 cut(s)	68, 508, 521
MspA1I	CMGCKG	2 cut(s)	225, 491
MspR9I	CCNGG	2 cut(s)	299, 503
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	65, 78, 222, 518
NaeI	GCCGGC	3 cut(s)	70, 510, 523
NarI	GGCGCC	1 cut(s)	506
NciI	CCSGG	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	10, 30, 37
NgoMIV	GCCGGC	3 cut(s)	68, 508, 521
NlaIII	CATG	3 cut(s)	52, 85, 415
NlaIV	GGNNCC	3 cut(s)	303, 507, 733
NmuCI	GTSAC	2 cut(s)	206, 442
NspV	TTCGAA	1 cut(s)	665
PdiI	GCCGGC	3 cut(s)	70, 510, 523
PfeI	GAWTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	589
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	61, 224, 461, 493, 560
Ple19I	CGATCG	1 cut(s)	40
PluTI	GGCGCC	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	303, 507, 733
PspPI	GGNCC	3 cut(s)	201, 227, 301
PsyI	GACNNNGTC	1 cut(s)	589
PvuI	CGATCG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	498, 651, 710
RsaNI	GTAC	3 cut(s)	497, 650, 709
Rsr2I	CGGWCCG	2 cut(s)	201, 227
RsrII	CGGWCCG	2 cut(s)	201, 227
SacI	GAGCTC	1 cut(s)	573
SacII	CCGCGG	1 cut(s)	226
SatI	GCNGC	5 cut(s)	60, 223, 460, 492, 559
Sau3AI	GATC	3 cut(s)	10, 30, 37
Sau96I	GGNCC	3 cut(s)	201, 227, 301
ScrFI	CCNGG	2 cut(s)	299, 503
SduI	GDGCHC	2 cut(s)	573, 734
SfaNI	GCATC	2 cut(s)	97, 590
SfoI	GGCGCC	1 cut(s)	507
Sfr303I	CCGCGG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	665
SgrBI	CCGCGG	1 cut(s)	226
SinI	GGWCC	3 cut(s)	201, 227, 301
Sse9I	AATT	2 cut(s)	6, 373
SsiI	CCGC	7 cut(s)	60, 66, 214, 220, 223, 225, 533
SspDI	GGCGCC	1 cut(s)	505
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	297, 501
StyI	CCWWGG	2 cut(s)	48, 627
TaaI	ACNGT	3 cut(s)	163, 643, 747
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	4 cut(s)	33, 135, 598, 665
TasI	AATT	2 cut(s)	6, 373
TauI	GCSGC	2 cut(s)	62, 225
TfiI	GAWTC	1 cut(s)	248
TseFI	GTSAC	2 cut(s)	206, 442
TseI	GCWGC	3 cut(s)	459, 491, 558
Tsp45I	GTSAC	2 cut(s)	206, 442
TspDTI	ATGAA	1 cut(s)	172
TspGWI	ACGGA	2 cut(s)	86, 178
Tth111I	GACNNNGTC	1 cut(s)	589
VpaK11BI	GGWCC	3 cut(s)	201, 227, 301
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.