Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8180642.1

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Forward (+)

412 .. 685

Gene Structure 274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8180642.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 274 bp

atggcaattgatctcgttaggttctccaagatcgacgatcggacggccatggaagaggccgcctccgccggcttacagagcatggagcatctcatccgtgtcttgtccagtcaaaccccgtctcacaacaacctcgactgccgtgaaatcaccgacttcaccgtcgccaagttcaagcagttcatctccgtcttgaaccggaccggtcacgcccgtttccgccgcggaccggctaagcaacctagtgaatctaccaccacctcttctcctcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

91

Amino Acids

10.13

Weight (kDa)

9.1

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccII	CGCG	1 cut(s)	225
AciI	CCGC	5 cut(s)	60, 66, 220, 223, 225
AcoI	YGGCCR	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	175, 196
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	45, 57
AsiGI	ACCGGT	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	201, 227
AsuHPI	GGTGA	2 cut(s)	142, 151
AvaII	GGWCC	2 cut(s)	201, 227
BceAI	ACGGC	2 cut(s)	60, 126
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	60, 223
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	2 cut(s)	61, 224
Bme18I	GGWCC	2 cut(s)	201, 227
BmgT120I	GGNCC	2 cut(s)	201, 227
BmsI	GCATC	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu1102I	GCTNAGC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	48, 223
BsaWI	WCCGGW	2 cut(s)	198, 203
BsaXI	ACNNNNNCTCC	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	3 cut(s)	68, 203, 229
Bse1I	ACTGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	48, 223
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	2 cut(s)	258, 261
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	47, 59
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	40
BsiSI	CCGG	4 cut(s)	69, 199, 204, 230
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	47, 59
Bsp143I	GATC	3 cut(s)	10, 30, 37
Bsp1720I	GCTNAGC	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	5 cut(s)	60, 66, 220, 223, 225
BspANI	GGCC	2 cut(s)	47, 59
BspFNI	CGCG	1 cut(s)	225
BsrFI	RCCGGY	3 cut(s)	68, 203, 229
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	3 cut(s)	68, 203, 229
BssECI	CCNNGG	2 cut(s)	48, 223
BssMI	GATC	3 cut(s)	10, 30, 37
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	48, 268
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	2 cut(s)	48, 223
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	3 cut(s)	13, 33, 40
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	10, 30, 37
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 78
BstUI	CGCG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	47, 59
BtgI	CCRYGG	2 cut(s)	48, 223
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	70
Cfr10I	RCCGGY	3 cut(s)	68, 203, 229
Cfr13I	GGNCC	2 cut(s)	201, 227
Cfr42I	CCGCGG	1 cut(s)	226
CpoI	CGGWCCG	2 cut(s)	201, 227
CspAI	ACCGGT	1 cut(s)	203
CspI	CGGWCCG	2 cut(s)	201, 227
CviAII	CATG	2 cut(s)	49, 82
CviJI	RGCY	4 cut(s)	47, 59, 72, 233
CviKI_1	RGCY	4 cut(s)	47, 59, 72, 233
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	12, 32, 39
DpnII	GATC	3 cut(s)	10, 30, 37
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	48, 268
EarI	CTCTTC	2 cut(s)	48, 268
EciI	GGCGGA	2 cut(s)	55, 209
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	201, 227
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	2 cut(s)	52, 85
FaiI	YATR	2 cut(s)	50, 83
FatI	CATG	2 cut(s)	48, 81
Fnu4HI	GCNGC	2 cut(s)	60, 223
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	60, 223
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	60, 223
HaeIII	GGCC	2 cut(s)	47, 59
HapII	CCGG	4 cut(s)	69, 199, 204, 230
Hin1II	CATG	2 cut(s)	52, 85
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	4 cut(s)	69, 199, 204, 230
HphI	GGTGA	2 cut(s)	142, 151
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	193
Hpy99I	CGWCG	2 cut(s)	38, 167
HpyCH4III	ACNGT	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 78
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	52, 85
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
KspI	CCGCGG	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	10, 30, 37
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	5 cut(s)	82, 121, 212, 217, 243
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	3 cut(s)	12, 32, 39
MboI	GATC	3 cut(s)	10, 30, 37
MboII	GAAGA	2 cut(s)	65, 255
MfeI	CAATTG	1 cut(s)	6
MluCI	AATT	1 cut(s)	6
MnlI	CCTC	4 cut(s)	49, 73, 143, 271
MroNI	GCCGGC	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	4 cut(s)	69, 199, 204, 230
MunI	CAATTG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	65, 78
NaeI	GCCGGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	3 cut(s)	10, 30, 37
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	2 cut(s)	52, 85
NmuCI	GTSAC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	248
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	61, 224
Ple19I	CGATCG	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	201, 227
PvuI	CGATCG	1 cut(s)	40
Rsr2I	CGGWCCG	2 cut(s)	201, 227
RsrII	CGGWCCG	2 cut(s)	201, 227
SacII	CCGCGG	1 cut(s)	226
SatI	GCNGC	2 cut(s)	60, 223
Sau3AI	GATC	3 cut(s)	10, 30, 37
Sau96I	GGNCC	2 cut(s)	201, 227
SetI	ASST	4 cut(s)	23, 135, 244, 263
SfaNI	GCATC	1 cut(s)	97
Sfr303I	CCGCGG	1 cut(s)	226
SgrBI	CCGCGG	1 cut(s)	226
SinI	GGWCC	2 cut(s)	201, 227
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	5 cut(s)	60, 66, 220, 223, 225
SspMI	CTAG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	33, 135
TasI	AATT	1 cut(s)	6
TauI	GCSGC	2 cut(s)	62, 225
TfiI	GAWTC	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	172
TspGWI	ACGGA	2 cut(s)	86, 178
VpaK11BI	GGWCC	2 cut(s)	201, 227
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.