Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

63150462 .. 63152449

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAAAAGGCCATCCAGGAGGCCGCATCGCAAGGCTTGAAGAGCATGGAGCACCTGATTCGTTACCTCTCTCACCAGCAACAGTCTAACCAGCCCTCCTCTCGCGTGGACTGCACCGACCTCACAGACCACACCGTCTCCAAGTTCAAAAAGGTCATTTCCCTTCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCCGTCGCCGCGGTTCCGGCTCCTCATCATCATCATCATCAGTTCTCTTCTTCTTCTTCTTCCACCTCTCTCCCCTTCCCTCCTTCCCAGACCCTGAGCTTGGCTCCGGCACCGGTCGCTTCCCCGGCGATTGCTCCTCCGGCTCCGGTCAAAGCTCCGGAGACTAATTTTGCTCATTCCATGACGCTTGACTTCACCAGGCCTAATGCACTGGCCTCAAACCCTAAGTGCACCGACATCGAGTTCAGCGTCTCGTCCAGCTCGTCGTTCATGTCGTCGGCCATCACCGGAGACAACAGCGTCTCCAACGGCAAGCTCGGTCTGTTCATTGCGCCGAATCCGGCCCCTGCCGTCTCCGGCGCCAAGCCTCCGCTCTCCGCCGCGCCGTTCAAGAAGCGGTGCCACGAGCACGACCACTCCGACGATGTCTCCTGCAAGTTATCCGGATCCGGATCCGCTTCCGGGTCGGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGGGTGAAGAAAACAATCCGAGTCCCGGCGATTAGTTCAAAGATTGCCGATATTCCACCGGACGAGTACTCCTGGAGAAAGTACGGCCAGAAGCCGATCAAAGGCTCACCTTACCCAAGGTACTTTACCCAATTCATATTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

294

Amino Acids

31.81

Weight (kDa)

9.76

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	210 - 263	9.8e-20	Plant zinc cluster domain
WRKY	PF03106	267 - 288	5.1e-07	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	170, 536
AccB1I	GGYRCC	3 cut(s)	346, 596, 636
AccBSI	CCGCTC	1 cut(s)	610
AccII	CGCG	4 cut(s)	141, 234, 248, 620
AccIII	TCCGGA	3 cut(s)	394, 680, 686
AclWI	GGATC	4 cut(s)	678, 684, 691, 697
AcoI	YGGCCR	3 cut(s)	214, 516, 823
AcyI	GRCGYC	1 cut(s)	597
AfaI	GTAC	3 cut(s)	806, 821, 860
AfiI	CCNNNNNNNGG	6 cut(s)	228, 337, 699, 729, 763, 839
AgeI	ACCGGT	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	76, 184, 628, 777
AjnI	CCWGG	3 cut(s)	51, 434, 809
AluBI	AGCT	5 cut(s)	21, 336, 392, 498, 553
AluI	AGCT	5 cut(s)	21, 336, 392, 498, 553
Alw21I	GWGCWC	3 cut(s)	90, 470, 648
Alw26I	GTCTC	7 cut(s)	178, 392, 493, 522, 544, 595, 670
Alw44I	GTGCAC	1 cut(s)	466
AlwI	GGATC	4 cut(s)	678, 684, 691, 697
AlwNI	CAGNNNCTG	1 cut(s)	331
Aor13HI	TCCGGA	3 cut(s)	394, 680, 686
AoxI	GGCC	8 cut(s)	45, 57, 214, 437, 450, 516, 579, 823
ApaLI	GTGCAC	1 cut(s)	466
AsiGI	ACCGGT	1 cut(s)	349
AspLEI	GCGC	4 cut(s)	234, 571, 599, 622
AspS9I	GGNCC	3 cut(s)	210, 236, 580
AsuC2I	CCSGG	4 cut(s)	223, 362, 700, 764
AsuHPI	GGTGA	5 cut(s)	101, 424, 514, 754, 837
AvaII	GGWCC	2 cut(s)	210, 236
BaeGI	GKGCMC	1 cut(s)	470
BamHI	GGATCC	2 cut(s)	683, 689
BanI	GGYRCC	3 cut(s)	346, 596, 636
BauI	CACGAG	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	3 cut(s)	90, 470, 648
BccI	CCATC	3 cut(s)	25, 56, 527
BceAI	ACGGC	4 cut(s)	562, 572, 607, 838
BcgI	CGANNNNNNTGC	4 cut(s)	77, 111, 457, 491
BciT130I	CCWGG	3 cut(s)	53, 436, 811
BcnI	CCSGG	4 cut(s)	223, 362, 700, 764
BcoDI	GTCTC	7 cut(s)	178, 392, 493, 522, 544, 595, 670
BfoI	RGCGCY	1 cut(s)	600
BisI	GCNGC	3 cut(s)	60, 246, 618
BlsI	GCNGC	3 cut(s)	61, 247, 619
BmcAI	AGTACT	1 cut(s)	806
Bme1390I	CCNGG	7 cut(s)	53, 223, 362, 436, 700, 764, 811
Bme18I	GGWCC	2 cut(s)	210, 236
BmgT120I	GGNCC	3 cut(s)	210, 236, 580
BmrFI	CCNGG	7 cut(s)	53, 223, 362, 436, 700, 764, 811
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	832
Bpu10I	CCTNAGC	1 cut(s)	332
BpuMI	CCSGG	4 cut(s)	223, 362, 700, 764
BsaBI	GATNNNNATC	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	597
BsaJI	CCNNGG	3 cut(s)	246, 360, 854
BsaWI	WCCGGW	8 cut(s)	207, 349, 382, 394, 524, 680, 686, 796
Bsc4I	CCNNNNNNNGG	6 cut(s)	228, 337, 699, 729, 763, 839
Bse118I	RCCGGY	2 cut(s)	212, 349
Bse1I	ACTGG	1 cut(s)	453
Bse3DI	GCAATG	2 cut(s)	564, 715
Bse8I	GATNNNNATC	1 cut(s)	688
BseAI	TCCGGA	3 cut(s)	394, 680, 686
BseBI	CCWGG	3 cut(s)	53, 436, 811
BseDI	CCNNGG	3 cut(s)	246, 360, 854
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	688
BseLI	CCNNNNNNNGG	6 cut(s)	228, 337, 699, 729, 763, 839
BseMI	GCAATG	2 cut(s)	564, 715
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	3 cut(s)	124, 249, 363
BseSI	GKGCMC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	4 cut(s)	141, 234, 248, 620
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	8 cut(s)	47, 59, 216, 439, 452, 518, 581, 825
BshNI	GGYRCC	3 cut(s)	346, 596, 636
BshTI	ACCGGT	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	3 cut(s)	90, 470, 648
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	6 cut(s)	228, 337, 699, 729, 763, 839
BsmAI	GTCTC	7 cut(s)	178, 392, 493, 522, 544, 595, 670
BsmBI	CGTCTC	4 cut(s)	178, 493, 544, 595
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	8 cut(s)	47, 59, 216, 439, 452, 518, 581, 825
Bsp1286I	GDGCHC	3 cut(s)	90, 470, 648
Bsp13I	TCCGGA	3 cut(s)	394, 680, 686
Bsp143I	GATC	3 cut(s)	683, 689, 834
BspANI	GGCC	8 cut(s)	47, 59, 216, 439, 452, 518, 581, 825
BspCNI	CTCAG	1 cut(s)	324
BspEI	TCCGGA	3 cut(s)	394, 680, 686
BspFNI	CGCG	4 cut(s)	141, 234, 248, 620
BspPI	GGATC	4 cut(s)	678, 684, 691, 697
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	3 cut(s)	346, 596, 636
BsrBI	CCGCTC	1 cut(s)	610
BsrDI	GCAATG	2 cut(s)	564, 715
BsrFI	RCCGGY	2 cut(s)	212, 349
BsrI	ACTGG	1 cut(s)	453
BssAI	RCCGGY	2 cut(s)	212, 349
BssECI	CCNNGG	3 cut(s)	246, 360, 854
BssMI	GATC	3 cut(s)	683, 689, 834
BssNI	GRCGYC	1 cut(s)	597
BssSI	CACGAG	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	854
Bst2BI	CACGAG	1 cut(s)	641
Bst2UI	CCWGG	3 cut(s)	53, 436, 811
Bst4CI	ACNGT	2 cut(s)	120, 172
Bst6I	CTCTTC	2 cut(s)	71, 289
BstACI	GRCGYC	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	2 cut(s)	332, 462
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	4 cut(s)	141, 234, 248, 620
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	4 cut(s)	234, 571, 599, 622
BstKTI	GATC	3 cut(s)	686, 692, 837
BstMAI	GTCTC	7 cut(s)	178, 392, 493, 522, 544, 595, 670
BstMBI	GATC	3 cut(s)	683, 689, 834
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 353, 362, 377
BstNI	CCWGG	3 cut(s)	53, 436, 811
BstSCI	CCNGG	7 cut(s)	51, 221, 360, 434, 698, 762, 809
BstSLI	GKGCMC	1 cut(s)	470
BstUI	CGCG	4 cut(s)	141, 234, 248, 620
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	683, 689
BstYI	RGATCY	2 cut(s)	683, 689
BsuRI	GGCC	8 cut(s)	47, 59, 216, 439, 452, 518, 581, 825
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	551
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	4 cut(s)	234, 571, 599, 622
Cfr10I	RCCGGY	2 cut(s)	212, 349
Cfr13I	GGNCC	3 cut(s)	210, 236, 580
Cfr42I	CCGCGG	1 cut(s)	249
CpoI	CGGWCCG	1 cut(s)	210
CseI	GACGC	3 cut(s)	430, 475, 526
Csp6I	GTAC	3 cut(s)	805, 820, 859
CspAI	ACCGGT	1 cut(s)	349
CspI	CGGWCCG	1 cut(s)	210
CviAII	CATG	3 cut(s)	82, 418, 508
CviQI	GTAC	3 cut(s)	805, 820, 859
DdeI	CTNAG	2 cut(s)	332, 462
DinI	GGCGCC	1 cut(s)	598
DpnI	GATC	3 cut(s)	685, 691, 836
DpnII	GATC	3 cut(s)	683, 689, 834
DrdI	GACNNNNNNGTC	2 cut(s)	170, 536
DseDI	GACNNNNNNGTC	2 cut(s)	170, 536
EaeI	YGGCCR	3 cut(s)	214, 516, 823
Eam1104I	CTCTTC	2 cut(s)	71, 289
EarI	CTCTTC	2 cut(s)	71, 289
EciI	GGCGGA	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	854
Eco147I	AGGCCT	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	210, 236
EcoRII	CCWGG	3 cut(s)	51, 434, 809
EcoT14I	CCWWGG	1 cut(s)	854
EgeI	GGCGCC	1 cut(s)	598
EheI	GGCGCC	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	854
Esp3I	CGTCTC	4 cut(s)	178, 493, 544, 595
FaeI	CATG	3 cut(s)	85, 421, 511
FaiI	YATR	5 cut(s)	83, 419, 509, 875, 883
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	81, 417, 507
Fnu4HI	GCNGC	3 cut(s)	60, 246, 618
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	60, 246, 618
GlaI	GCGC	4 cut(s)	233, 570, 598, 621
GluI	GCNGC	3 cut(s)	60, 246, 618
GsuI	CTGGAG	1 cut(s)	832
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	8 cut(s)	47, 59, 216, 439, 452, 518, 581, 825
HgaI	GACGC	3 cut(s)	430, 475, 526
HhaI	GCGC	4 cut(s)	234, 571, 599, 622
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	3 cut(s)	85, 421, 511
Hin6I	GCGC	4 cut(s)	232, 569, 597, 620
HinP1I	GCGC	4 cut(s)	232, 569, 597, 620
HinfI	GANTC	3 cut(s)	94, 574, 759
HphI	GGTGA	5 cut(s)	101, 424, 514, 754, 837
Hpy166II	GTNNAC	2 cut(s)	145, 468
Hpy188I	TCNGA	4 cut(s)	27, 204, 658, 758
Hpy188III	TCNNGA	4 cut(s)	395, 628, 681, 687
Hpy8I	GTNNAC	2 cut(s)	145, 468
Hpy99I	CGWCG	4 cut(s)	245, 505, 517, 662
HpyAV	CCTTC	4 cut(s)	209, 322, 330, 723
HpyCH4III	ACNGT	2 cut(s)	120, 172
HpyCH4V	TGCA	4 cut(s)	150, 446, 468, 672
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 353, 362, 377
HpyF3I	CTNAG	2 cut(s)	332, 462
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	3 cut(s)	85, 421, 511
HspAI	GCGC	4 cut(s)	232, 569, 597, 620
KasI	GGCGCC	1 cut(s)	596
Kpn2I	TCCGGA	3 cut(s)	394, 680, 686
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	683, 689, 834
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	7 cut(s)	85, 262, 346, 376, 385, 397, 725
LweI	GCATC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	685, 691, 836
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	3 cut(s)	683, 689, 834
MboII	GAAGA	9 cut(s)	40, 47, 88, 276, 279, 282, 285, 288, 757
MflI	RGATCY	2 cut(s)	683, 689
MhlI	GDGCHC	3 cut(s)	90, 470, 648
MluCI	AATT	2 cut(s)	403, 869
Mly113I	GGCGCC	1 cut(s)	597
MlyI	GAGTC	1 cut(s)	768
MmeI	TCCRAC	2 cut(s)	567, 681
MroI	TCCGGA	3 cut(s)	394, 680, 686
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	7 cut(s)	53, 223, 362, 436, 700, 764, 811
MvaI	CCWGG	3 cut(s)	53, 436, 811
MvnI	CGCG	4 cut(s)	141, 234, 248, 620
MwoI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 353, 362, 377
NarI	GGCGCC	1 cut(s)	597
NciI	CCSGG	4 cut(s)	223, 362, 700, 764
NdeII	GATC	3 cut(s)	683, 689, 834
NlaIII	CATG	3 cut(s)	85, 421, 511
PceI	AGGCCT	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	4 cut(s)	483, 497, 509, 654
PfeI	GAWTC	2 cut(s)	94, 574
PflFI	GACNNNGTC	1 cut(s)	662
PfoI	TCCNGGA	2 cut(s)	51, 809
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	61, 247, 619
PleI	GAGTC	1 cut(s)	767
PluTI	GGCGCC	1 cut(s)	600
PpsI	GAGTC	1 cut(s)	767
Psp6I	CCWGG	3 cut(s)	51, 434, 809
PspGI	CCWGG	3 cut(s)	51, 434, 809
PspPI	GGNCC	3 cut(s)	210, 236, 580
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	683, 689
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	3 cut(s)	806, 821, 860
RsaNI	GTAC	3 cut(s)	805, 820, 859
Rsr2I	CGGWCCG	1 cut(s)	210
RsrII	CGGWCCG	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	71
SatI	GCNGC	3 cut(s)	60, 246, 618
Sau3AI	GATC	3 cut(s)	683, 689, 834
Sau96I	GGNCC	3 cut(s)	210, 236, 580
ScaI	AGTACT	1 cut(s)	806
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	7 cut(s)	53, 223, 362, 436, 700, 764, 811
SduI	GDGCHC	3 cut(s)	90, 470, 648
SfaNI	GCATC	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	598
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	210, 236
Sse9I	AATT	2 cut(s)	403, 869
SseBI	AGGCCT	1 cut(s)	439
SspDI	GGCGCC	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	7 cut(s)	51, 221, 360, 434, 698, 762, 809
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	2 cut(s)	120, 172
TaqI	TCGA	1 cut(s)	477
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	2 cut(s)	403, 869
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	3 cut(s)	62, 248, 620
TfiI	GAWTC	2 cut(s)	94, 574
TscAI	CASTG	1 cut(s)	453
TspDTI	ATGAA	3 cut(s)	496, 553, 862
TspRI	CASTG	1 cut(s)	453
Tth111I	GACNNNGTC	1 cut(s)	662
VneI	GTGCAC	1 cut(s)	466
VpaK11BI	GGWCC	2 cut(s)	210, 236
ZrmI	AGTACT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.