Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

15289788 .. 15291934

Gene Structure 2147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCGTCGATCTAATGCGTTTCCCTAAGATAGATGATCAAACGGCTATTCAGGAAGCTGCATCGCAAGGTTTACAAAGTATGGAACATCTGATCCGTGTCCTCTCTAACCGTCCCGAACAACAACACAACGTTGACTGCTCCGAGATCACTGACTTCACCGTTTCTAAATTCAAAACCGTCATTTCTCTCCTTAACCGTACTGGTCACGCTCGGTTCAGACGCGGACCGGTTCACTCCACTTCCTCTGCCGCATCTCAGAAACTACAGAGTCAGATCGTTAAAAATACTCAACCTGAGGCTCCGATAGTGAGAACAACTACGAATCACCCTCAAATCGTTCCTCCACCGTCTAGTGTAACACTCGATTTCTCTAAACCAAGCATCTTCGGCACCAAAGCTAAGAGCGCCGAGCTGGAATTCTCCAAAGAAAACTTCAGTGTTTCTTTAAACTCCTCATTCATGTCGTCGGCGATAACCGGAGACGGCAGCGTCTCCAATGGAAAAATCTTCCTTGCTTCTGCTCCGTTGCAGCCTGTTAACTCTTCCGGAAAACCACCGTTGGCTGGTCATCCTTACAGAAAGAGATGTCTCGAGCATGAGCACTCAGAGAGTTTCTCCGGAAAAGTCTCCGGCTCCGCCTACGGAAAGTGCCATTGCAAGAAAAGCAGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGATAAGTGCAAAGATCGCCGATATTCCACCGGACGAATATTCGTGGAGGAAGTACGGACAAAAACCGATCAAGGGCTCACCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCCAGCGAGGAAACACGTGGAACGAGCATTAGATGATCCAGCGATGCTTATTGTGACATACGAAGGAGAGCACCGTCATAACCAATCCGCGATGCAGGAGAATATTTCTTCTTCAGGCATTAATGATTTAGTGTTTGCCTCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

325

Amino Acids

35.8

Weight (kDa)

9.68

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	194 - 242	1.6e-18	Plant zinc cluster domain
WRKY	PF03106	246 - 265	2e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	2 cut(s)	225, 920
AccIII	TCCGGA	2 cut(s)	548, 620
AciI	CCGC	4 cut(s)	225, 252, 639, 918
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	2 cut(s)	88, 860
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	170, 419
AcuI	CTGAAG	2 cut(s)	421, 927
AcvI	CACGTG	2 cut(s)	797, 847
AfaI	GTAC	4 cut(s)	202, 702, 761, 817
AfiI	CCNNNNNNNGG	2 cut(s)	566, 779
AflIII	ACRYGT	1 cut(s)	844
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AleI	CACNNNNGTG	1 cut(s)	795
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	59, 401, 415
AluI	AGCT	3 cut(s)	59, 401, 415
Alw21I	GWGCWC	2 cut(s)	606, 903
Alw26I	GTCTC	4 cut(s)	477, 499, 596, 634
AlwI	GGATC	2 cut(s)	88, 860
Ama87I	CYCGRG	1 cut(s)	593
Aor13HI	TCCGGA	2 cut(s)	548, 620
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	59, 489, 532
ApoI	RAATTY	2 cut(s)	170, 419
AseI	ATTAAT	1 cut(s)	951
AsiGI	ACCGGT	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	151, 320, 777
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	785
BbrPI	CACGTG	2 cut(s)	797, 847
Bbv12I	GWGCWC	2 cut(s)	606, 903
BbvI	GCAGC	3 cut(s)	46, 501, 544
BceAI	ACGGC	2 cut(s)	60, 502
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	4 cut(s)	477, 499, 596, 634
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	411
BisI	GCNGC	4 cut(s)	60, 252, 490, 533
BlsI	GCNGC	4 cut(s)	61, 253, 491, 534
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	303, 394, 637
BmsI	GCATC	5 cut(s)	71, 263, 393, 864, 912
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
BsaAI	YACGTR	2 cut(s)	797, 847
BsaJI	CCNNGG	1 cut(s)	969
BsaWI	WCCGGW	5 cut(s)	229, 479, 548, 620, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 779
Bse118I	RCCGGY	2 cut(s)	229, 703
Bse1I	ACTGG	1 cut(s)	208
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	655
BseAI	TCCGGA	2 cut(s)	548, 620
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	3 cut(s)	571, 687, 833
BseLI	CCNNNNNNNGG	2 cut(s)	566, 779
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	272, 288, 621
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	46, 501, 544
BsgI	GTGCAG	1 cut(s)	832
Bsh1236I	CGCG	2 cut(s)	225, 920
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	392
BshTI	ACCGGT	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	606, 903
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	7 cut(s)	230, 480, 549, 621, 633, 704, 737
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	566, 779
BsmAI	GTCTC	4 cut(s)	477, 499, 596, 634
BsmBI	CGTCTC	2 cut(s)	477, 499
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	606, 785, 903
Bsp13I	TCCGGA	2 cut(s)	548, 620
Bsp143I	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
BspACI	CCGC	4 cut(s)	225, 252, 639, 918
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	271, 289, 620
BspEI	TCCGGA	2 cut(s)	548, 620
BspFNI	CGCG	2 cut(s)	225, 920
BspLI	GGNNCC	3 cut(s)	303, 394, 637
BspPI	GGATC	2 cut(s)	88, 860
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	655
BsrFI	RCCGGY	2 cut(s)	229, 703
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	2 cut(s)	229, 703
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
Bst4CI	ACNGT	8 cut(s)	113, 163, 181, 200, 351, 561, 694, 905
Bst6I	CTCTTC	2 cut(s)	550, 680
BstBAI	YACGTR	2 cut(s)	797, 847
BstDEI	CTNAG	5 cut(s)	27, 258, 297, 402, 607
BstF5I	GGATG	3 cut(s)	571, 687, 833
BstFNI	CGCG	2 cut(s)	225, 920
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	8 cut(s)	13, 40, 96, 150, 279, 723, 777, 868
BstMAI	GTCTC	4 cut(s)	477, 499, 596, 634
BstMBI	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	390, 407, 666, 713, 722
BstSFI	CTRYAG	1 cut(s)	266
BstUI	CGCG	2 cut(s)	225, 920
BstV1I	GCAGC	3 cut(s)	46, 501, 544
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	3 cut(s)	48, 887, 935
BtsCI	GGATG	3 cut(s)	571, 687, 833
BtsIMutI	CAGTG	2 cut(s)	150, 445
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	2 cut(s)	229, 703
Cfr13I	GGNCC	1 cut(s)	227
CpoI	CGGWCCG	1 cut(s)	227
CseI	GACGC	2 cut(s)	231, 481
Csp6I	GTAC	4 cut(s)	201, 701, 760, 816
CspAI	ACCGGT	1 cut(s)	229
CspI	CGGWCCG	1 cut(s)	227
CviAII	CATG	2 cut(s)	463, 599
CviQI	GTAC	4 cut(s)	201, 701, 760, 816
DdeI	CTNAG	5 cut(s)	27, 258, 297, 402, 607
DpnI	GATC	8 cut(s)	12, 39, 95, 149, 278, 722, 776, 867
DpnII	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
DraI	TTTAAA	1 cut(s)	450
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	550, 680
EarI	CTCTTC	2 cut(s)	550, 680
EciI	GGCGGA	1 cut(s)	628
Eco24I	GRGCYC	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	421, 927
Eco72I	CACGTG	2 cut(s)	797, 847
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	785
Esp3I	CGTCTC	2 cut(s)	477, 499
FaeI	CATG	2 cut(s)	466, 602
FaiI	YATR	5 cut(s)	83, 464, 600, 889, 909
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	2 cut(s)	462, 598
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	60, 252, 490, 533
FokI	GGATG	3 cut(s)	558, 694, 840
FriOI	GRGCYC	1 cut(s)	785
Fsp4HI	GCNGC	4 cut(s)	60, 252, 490, 533
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	4 cut(s)	60, 252, 490, 533
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	7 cut(s)	230, 480, 549, 621, 633, 704, 737
HgaI	GACGC	2 cut(s)	231, 481
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	2 cut(s)	466, 602
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HincII	GTYRAC	2 cut(s)	136, 541
HindII	GTYRAC	2 cut(s)	136, 541
HinfI	GANTC	2 cut(s)	271, 325
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	7 cut(s)	230, 480, 549, 621, 633, 704, 737
HphI	GGTGA	3 cut(s)	151, 320, 777
Hpy166II	GTNNAC	4 cut(s)	74, 136, 235, 541
Hpy188I	TCNGA	9 cut(s)	93, 145, 221, 261, 276, 306, 610, 681, 824
Hpy188III	TCNNGA	5 cut(s)	53, 116, 549, 593, 621
Hpy8I	GTNNAC	4 cut(s)	74, 136, 235, 541
Hpy99I	CGWCG	2 cut(s)	11, 472
HpyAV	CCTTC	1 cut(s)	887
HpyCH4III	ACNGT	8 cut(s)	113, 163, 181, 200, 351, 561, 694, 905
HpyCH4IV	ACGT	3 cut(s)	132, 796, 846
HpyCH4V	TGCA	6 cut(s)	62, 532, 660, 716, 813, 925
HpyF10VI	GCNNNNNNNGC	5 cut(s)	390, 407, 666, 713, 722
HpyF3I	CTNAG	5 cut(s)	27, 258, 297, 402, 607
HpySE526I	ACGT	3 cut(s)	132, 796, 846
Hsp92II	CATG	2 cut(s)	466, 602
HspAI	GCGC	1 cut(s)	408
Kpn2I	TCCGGA	2 cut(s)	548, 620
Ksp22I	TGATCA	1 cut(s)	37
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
LmnI	GCTCC	4 cut(s)	146, 307, 529, 641
Lsp1109I	GCAGC	3 cut(s)	46, 501, 544
LweI	GCATC	5 cut(s)	71, 263, 393, 864, 912
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	3 cut(s)	132, 796, 846
MaeIII	GTNAC	4 cut(s)	206, 358, 800, 883
MalI	GATC	8 cut(s)	12, 39, 95, 149, 278, 722, 776, 867
MboI	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
MboII	GAAGA	6 cut(s)	379, 502, 537, 697, 930, 933
MhlI	GDGCHC	3 cut(s)	606, 785, 903
MluCI	AATT	2 cut(s)	170, 419
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	9 cut(s)	113, 256, 292, 342, 354, 466, 747, 818, 831
MroI	TCCGGA	2 cut(s)	548, 620
MseI	TTAA	5 cut(s)	195, 282, 449, 540, 951
MslI	CAYNNNNRTG	1 cut(s)	795
MspI	CCGG	7 cut(s)	230, 480, 549, 621, 633, 704, 737
MvnI	CGCG	2 cut(s)	225, 920
MwoI	GCNNNNNNNGC	5 cut(s)	390, 407, 666, 713, 722
NdeII	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
NlaIII	CATG	2 cut(s)	466, 602
NlaIV	GGNNCC	3 cut(s)	303, 394, 637
NmeAIII	GCCGAG	2 cut(s)	436, 950
NmuCI	GTSAC	2 cut(s)	206, 883
OliI	CACNNNNGTG	1 cut(s)	795
PaeR7I	CTCGAG	1 cut(s)	593
PfeI	GAWTC	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	61, 253, 491, 534
PleI	GAGTC	1 cut(s)	279
PmaCI	CACGTG	2 cut(s)	797, 847
PmlI	CACGTG	2 cut(s)	797, 847
PpsI	GAGTC	1 cut(s)	279
Ppu21I	YACGTR	2 cut(s)	797, 847
PshBI	ATTAAT	1 cut(s)	951
Psp1406I	AACGTT	1 cut(s)	132
PspCI	CACGTG	2 cut(s)	797, 847
PspN4I	GGNNCC	3 cut(s)	303, 394, 637
PspPI	GGNCC	1 cut(s)	227
RsaI	GTAC	4 cut(s)	202, 702, 761, 817
RsaNI	GTAC	4 cut(s)	201, 701, 760, 816
RseI	CAYNNNNRTG	1 cut(s)	795
Rsr2I	CGGWCCG	1 cut(s)	227
RsrII	CGGWCCG	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	195, 282, 449, 540, 951
SatI	GCNGC	4 cut(s)	60, 252, 490, 533
Sau3AI	GATC	8 cut(s)	10, 37, 93, 147, 276, 720, 774, 865
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	280
SduI	GDGCHC	3 cut(s)	606, 785, 903
SetI	ASST	8 cut(s)	61, 73, 135, 298, 403, 417, 799, 849
SfaNI	GCATC	5 cut(s)	71, 263, 393, 864, 912
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	593
SinI	GGWCC	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	2 cut(s)	170, 419
SsiI	CCGC	4 cut(s)	225, 252, 639, 918
SspI	AATATT	2 cut(s)	746, 934
SspMI	CTAG	1 cut(s)	354
TaaI	ACNGT	8 cut(s)	113, 163, 181, 200, 351, 561, 694, 905
TaiI	ACGT	3 cut(s)	135, 799, 849
TaqI	TCGA	3 cut(s)	9, 366, 594
TasI	AATT	2 cut(s)	170, 419
TatI	WGTACW	1 cut(s)	815
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	195, 282, 449, 540, 951
Tru9I	TTAA	5 cut(s)	195, 282, 449, 540, 951
TscAI	CASTG	2 cut(s)	157, 445
TseFI	GTSAC	2 cut(s)	206, 883
TseI	GCWGC	3 cut(s)	59, 489, 532
Tsp45I	GTSAC	2 cut(s)	206, 883
TspDTI	ATGAA	2 cut(s)	451, 698
TspGWI	ACGGA	4 cut(s)	86, 516, 660, 777
TspRI	CASTG	2 cut(s)	157, 445
VpaK11BI	GGWCC	1 cut(s)	227
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	2 cut(s)	170, 419
XhoI	CTCGAG	1 cut(s)	593
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.