Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

26579453 .. 26581081

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1244300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCCAGCTCCAATGGCTGTAGATCTAGTTGGCTTCTCCAAGATTGATGATCGGACGGCCATGCAAGAAGCTGCCTCCGCCGGCTTGCAAAGCATGGAGCACCTCATCCGCGCCCTATCCAATCATCCCCCATCCCAAACCCCACTCGATTGCCGGGAAATCACCGACTTCACCGTGACAAAGTTCAAGCAGCTAATCTCTGTTCTGAACCGGACCGGTCACGCGCGGTTCCGCCGTGGACCGGCCAATCCACCTTCCGACCCGGTCCACCCAAAACCTCAGACGACTTTGACTGTTCTTCAAACACCACAGTCCGACAAAGATTCCTCCACTGCTCTGTCCCCGCCGCTCTCCACTACTTCGTCGTTTCTATCCTCCATCACAATCGGTGACGGCAGCGTTTCCAACGGTAAAGCCTTCTCATCGATTTCCGTGCCTCCGGCGCCGGCTTTCTCCGCTGGAAAACCTCCCCTTCCACAATCTCACCGGAAACGGTGTCACGACGGCGAAACCGCTAAAAGATCATCGTCTGGACACTGCCATTGCTCTAAGAGAAGGAAGTCTAAGGTTAAGAGGACGATGAGAGTGCCGGCTGTTAGCTCGAAAATCGCCGATATACCTGCCGATGAGTTCACCTGGAGAAAGTACGGTCAAAAGCCGATCAAGGGCTCGCCTTACCCGAGAGGGTATTATAAGTGCAGTACAGTGAGAGGCTGTCCGGCAAGGAAACACGTGGAGAGAGCTCAGGACAACCCCACTATGCTCGTCGTTACCTACGAGGCTGAGCACCATCACCCGCACCCTTCCATCACAGCCGCAAATGTGGGCCTTGTTTTCCAATCTTCTAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

285

Amino Acids

30.92

Weight (kDa)

9.87

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	163 - 205	1.7e-15	Plant zinc cluster domain
WRKY	PF03106	209 - 266	9.6e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	349
AccII	CGCG	3 cut(s)	111, 224, 226
AcoI	YGGCCR	2 cut(s)	57, 243
AcvI	CACGTG	1 cut(s)	733
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	2 cut(s)	647, 703
AfiI	CCNNNNNNNGG	2 cut(s)	241, 665
AflIII	ACRYGT	1 cut(s)	730
AgeI	ACCGGT	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	187, 302
AjnI	CCWGG	1 cut(s)	635
AluBI	AGCT	5 cut(s)	8, 71, 193, 600, 743
AluI	AGCT	5 cut(s)	8, 71, 193, 600, 743
Alw21I	GWGCWC	3 cut(s)	102, 745, 789
Ama87I	CYCGRG	1 cut(s)	679
AoxI	GGCC	3 cut(s)	57, 243, 826
ApeKI	GCWGC	3 cut(s)	71, 190, 396
AsiGI	ACCGGT	1 cut(s)	215
AspLEI	GCGC	3 cut(s)	113, 226, 445
AspS9I	GGNCC	4 cut(s)	213, 239, 265, 826
AsuC2I	CCSGG	2 cut(s)	155, 263
AsuHPI	GGTGA	6 cut(s)	154, 163, 401, 476, 625, 785
AvaI	CYCGRG	1 cut(s)	679
AvaII	GGWCC	3 cut(s)	213, 239, 265
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	671, 745
BbrPI	CACGTG	1 cut(s)	733
Bbv12I	GWGCWC	3 cut(s)	102, 745, 789
BbvI	GCAGC	3 cut(s)	58, 202, 408
BccI	CCATC	4 cut(s)	139, 386, 798, 815
BceAI	ACGGC	4 cut(s)	72, 219, 409, 520
BcgI	CGANNNNNNTGC	6 cut(s)	415, 449, 568, 602, 602, 636
BciT130I	CCWGG	1 cut(s)	637
BcnI	CCSGG	2 cut(s)	155, 263
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	628
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	5 cut(s)	72, 191, 347, 397, 816
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	5 cut(s)	73, 192, 348, 398, 817
Bme1390I	CCNGG	3 cut(s)	155, 263, 637
Bme18I	GGWCC	3 cut(s)	213, 239, 265
BmeT110I	CYCGRG	1 cut(s)	679
BmgT120I	GGNCC	4 cut(s)	213, 239, 265, 826
BmiI	GGNNCC	2 cut(s)	230, 444
BmrFI	CCNGG	3 cut(s)	155, 263, 637
BpmI	CTGGAG	1 cut(s)	658
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	783
BpuMI	CCSGG	2 cut(s)	155, 263
Bsa29I	ATCGAT	1 cut(s)	425
BsaAI	YACGTR	1 cut(s)	733
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	3 cut(s)	210, 215, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 665
Bse118I	RCCGGY	5 cut(s)	80, 215, 241, 445, 589
Bse3DI	GCAATG	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	637
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	3 cut(s)	105, 124, 131
BseLI	CCNNNNNNNGG	2 cut(s)	241, 665
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	3 cut(s)	293, 758, 774
BseXI	GCAGC	3 cut(s)	58, 202, 408
BsgI	GTGCAG	1 cut(s)	718
Bsh1236I	CGCG	3 cut(s)	111, 224, 226
BshFI	GGCC	3 cut(s)	59, 245, 828
BshNI	GGYRCC	1 cut(s)	442
BshTI	ACCGGT	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	425
BsiHKAI	GWGCWC	3 cut(s)	102, 745, 789
BsiHKCI	CYCGRG	1 cut(s)	679
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	241, 665
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	59, 245, 828
BsoBI	CYCGRG	1 cut(s)	679
Bsp1286I	GDGCHC	4 cut(s)	102, 671, 745, 789
Bsp143I	GATC	4 cut(s)	22, 49, 521, 660
Bsp1720I	GCTNAGC	1 cut(s)	783
BspANI	GGCC	3 cut(s)	59, 245, 828
BspCNI	CTCAG	3 cut(s)	292, 757, 775
BspDI	ATCGAT	1 cut(s)	425
BspFNI	CGCG	3 cut(s)	111, 224, 226
BspLI	GGNNCC	2 cut(s)	230, 444
BspMI	ACCTGC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	541
BsrFI	RCCGGY	5 cut(s)	80, 215, 241, 445, 589
BssAI	RCCGGY	5 cut(s)	80, 215, 241, 445, 589
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	4 cut(s)	22, 49, 521, 660
BssNI	GRCGYC	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	7 cut(s)	175, 295, 312, 410, 495, 650, 706
BstACI	GRCGYC	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	733
BstC8I	GCNNGC	6 cut(s)	6, 82, 86, 447, 591, 671
BstDEI	CTNAG	5 cut(s)	279, 549, 564, 744, 783
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	105, 124, 131
BstFNI	CGCG	3 cut(s)	111, 224, 226
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	3 cut(s)	113, 226, 445
BstKTI	GATC	4 cut(s)	25, 52, 524, 663
BstMBI	GATC	4 cut(s)	22, 49, 521, 660
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 77, 90, 442, 455
BstNI	CCWGG	1 cut(s)	637
BstSCI	CCNGG	3 cut(s)	153, 261, 635
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	3 cut(s)	111, 224, 226
BstV1I	GCAGC	3 cut(s)	58, 202, 408
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	59, 245, 828
BsuTUI	ATCGAT	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	105, 124, 131
BtsI	GCAGTG	2 cut(s)	330, 535
BtsIMutI	CAGTG	3 cut(s)	330, 535, 711
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	6 cut(s)	6, 82, 86, 447, 591, 671
CfoI	GCGC	3 cut(s)	113, 226, 445
Cfr10I	RCCGGY	5 cut(s)	80, 215, 241, 445, 589
Cfr13I	GGNCC	4 cut(s)	213, 239, 265, 826
ClaI	ATCGAT	1 cut(s)	425
CpoI	CGGWCCG	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	646, 702
CspAI	ACCGGT	1 cut(s)	215
CspI	CGGWCCG	1 cut(s)	213
CviAII	CATG	2 cut(s)	61, 94
CviQI	GTAC	2 cut(s)	646, 702
DdeI	CTNAG	5 cut(s)	279, 549, 564, 744, 783
DinI	GGCGCC	1 cut(s)	444
DpnI	GATC	4 cut(s)	24, 51, 523, 662
DpnII	GATC	4 cut(s)	22, 49, 521, 660
EaeI	YGGCCR	2 cut(s)	57, 243
EciI	GGCGGA	2 cut(s)	67, 221
Ecl136II	GAGCTC	1 cut(s)	743
Eco24I	GRGCYC	2 cut(s)	671, 745
Eco47I	GGWCC	3 cut(s)	213, 239, 265
Eco53kI	GAGCTC	1 cut(s)	743
Eco72I	CACGTG	1 cut(s)	733
Eco88I	CYCGRG	1 cut(s)	679
EcoICRI	GAGCTC	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	635
EcoT38I	GRGCYC	2 cut(s)	671, 745
EgeI	GGCGCC	1 cut(s)	444
EheI	GGCGCC	1 cut(s)	444
FaeI	CATG	2 cut(s)	64, 97
FaiI	YATR	5 cut(s)	62, 95, 617, 693, 761
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	2 cut(s)	60, 93
FauI	CCCGC	2 cut(s)	351, 804
Fnu4HI	GCNGC	5 cut(s)	72, 191, 347, 397, 816
FokI	GGATG	3 cut(s)	92, 111, 118
FriOI	GRGCYC	2 cut(s)	671, 745
Fsp4HI	GCNGC	5 cut(s)	72, 191, 347, 397, 816
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	3 cut(s)	112, 225, 444
GluI	GCNGC	5 cut(s)	72, 191, 347, 397, 816
GsuI	CTGGAG	1 cut(s)	658
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	3 cut(s)	59, 245, 828
HhaI	GCGC	3 cut(s)	113, 226, 445
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	2 cut(s)	64, 97
Hin6I	GCGC	3 cut(s)	111, 224, 443
HinP1I	GCGC	3 cut(s)	111, 224, 443
HinfI	GANTC	1 cut(s)	323
HphI	GGTGA	6 cut(s)	154, 163, 401, 476, 625, 785
Hpy166II	GTNNAC	3 cut(s)	239, 268, 633
Hpy188I	TCNGA	5 cut(s)	54, 207, 259, 282, 316
Hpy188III	TCNNGA	3 cut(s)	500, 531, 746
Hpy8I	GTNNAC	3 cut(s)	239, 268, 633
Hpy99I	CGWCG	3 cut(s)	367, 506, 770
HpyAV	CCTTC	5 cut(s)	264, 427, 482, 549, 813
HpyCH4III	ACNGT	7 cut(s)	175, 295, 312, 410, 495, 650, 706
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	3 cut(s)	64, 88, 699
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 77, 90, 442, 455
HpyF3I	CTNAG	5 cut(s)	279, 549, 564, 744, 783
HpySE526I	ACGT	1 cut(s)	732
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	64, 97
HspAI	GCGC	3 cut(s)	111, 224, 443
KasI	GGCGCC	1 cut(s)	442
KroI	GCCGGC	3 cut(s)	80, 445, 589
KroNI	GCCGGC	3 cut(s)	82, 447, 591
Kzo9I	GATC	4 cut(s)	22, 49, 521, 660
LmnI	GCTCC	2 cut(s)	13, 97
Lsp1109I	GCAGC	3 cut(s)	58, 202, 408
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	5 cut(s)	175, 218, 389, 497, 769
MalI	GATC	4 cut(s)	24, 51, 523, 662
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	4 cut(s)	22, 49, 521, 660
MboII	GAAGA	2 cut(s)	290, 834
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	4 cut(s)	102, 671, 745, 789
Mly113I	GGCGCC	1 cut(s)	443
MmeI	TCCRAC	3 cut(s)	282, 339, 429
MroNI	GCCGGC	3 cut(s)	80, 445, 589
MseI	TTAA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	3 cut(s)	155, 263, 637
MvaI	CCWGG	1 cut(s)	637
MvnI	CGCG	3 cut(s)	111, 224, 226
MwoI	GCNNNNNNNGC	5 cut(s)	14, 77, 90, 442, 455
NaeI	GCCGGC	3 cut(s)	82, 447, 591
NarI	GGCGCC	1 cut(s)	443
NciI	CCSGG	2 cut(s)	155, 263
NdeII	GATC	4 cut(s)	22, 49, 521, 660
NgoMIV	GCCGGC	3 cut(s)	80, 445, 589
NlaIII	CATG	2 cut(s)	64, 97
NlaIV	GGNNCC	2 cut(s)	230, 444
NmuCI	GTSAC	4 cut(s)	175, 218, 389, 497
PcsI	WCGNNNNNNNCGW	2 cut(s)	677, 774
PdiI	GCCGGC	3 cut(s)	82, 447, 591
PfeI	GAWTC	1 cut(s)	323
PflFI	GACNNNGTC	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	73, 192, 348, 398, 817
PluTI	GGCGCC	1 cut(s)	446
PmaCI	CACGTG	1 cut(s)	733
PmlI	CACGTG	1 cut(s)	733
Ppu21I	YACGTR	1 cut(s)	733
PsiI	TTATAA	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	745
Psp6I	CCWGG	1 cut(s)	635
PspCI	CACGTG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	635
PspN4I	GGNNCC	2 cut(s)	230, 444
PspPI	GGNCC	4 cut(s)	213, 239, 265, 826
PsuI	RGATCY	1 cut(s)	22
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	647, 703
RsaNI	GTAC	2 cut(s)	646, 702
Rsr2I	CGGWCCG	1 cut(s)	213
RsrII	CGGWCCG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	745
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	5 cut(s)	72, 191, 347, 397, 816
Sau3AI	GATC	4 cut(s)	22, 49, 521, 660
Sau96I	GGNCC	4 cut(s)	213, 239, 265, 826
ScrFI	CCNGG	3 cut(s)	155, 263, 637
SduI	GDGCHC	4 cut(s)	102, 671, 745, 789
SfcI	CTRYAG	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	444
SinI	GGWCC	3 cut(s)	213, 239, 265
SspDI	GGCGCC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	745
StyD4I	CCNGG	3 cut(s)	153, 261, 635
TaaI	ACNGT	7 cut(s)	175, 295, 312, 410, 495, 650, 706
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	3 cut(s)	147, 425, 602
TatI	WGTACW	1 cut(s)	701
TauI	GCSGC	2 cut(s)	349, 818
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	3 cut(s)	337, 542, 711
TseFI	GTSAC	4 cut(s)	175, 218, 389, 497
TseI	GCWGC	3 cut(s)	71, 190, 396
Tsp45I	GTSAC	4 cut(s)	175, 218, 389, 497
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	3 cut(s)	337, 542, 711
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	3 cut(s)	213, 239, 265
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.