Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Forward (+)

66597568 .. 66600251

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG452000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAAAAGGCCATCCAGGAGGCCGCATCGCAAGGCTTGAAGAGCATGGAGCACCTGATTCGTTACCTCTCTCACCAGCAACAGTCTAACCAGCCCTCCTCTCGCGTGGACTGCACCGACCTCACAGACCACACCGTCTCCAAGTTCAAAAAGGTCATTTCCCTTCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCGGTCGCCGCGTTTCCGGCTCCTCATCATCATCAGTTCTATTCTTCTTCTTCTTCTTCTTCTCCGCCGTCCACCTCTCTCCTCTTCCCTCCCTCCCAGACCTTGAGCTTGGCTCCGGCACCAGTTGCTCCCCCGGCGATTGCTCCTCCGGCTCCGATCAAGGCTCCGGAGACTAATTTTGCTCATTCCATGACGCTTGACTTCACCAGGCCTAATGCTCTGGCCTCAAACCCTAAGTGTACCGACATCGAGTTCAGCGTCTCGTCGAGCTCGTCGTTTATGTCGTCGGCCATCACCGGAGACAATAGCGTCTCCAACGGCAAGCTCGGTCTGTTCATTGCTCCGAATCCGGCCCCGGCCGTCTCCGGCGCCAAGCCTCCGCTCTCCGCCGCGCCGTTTAAGAAGCGGTGCCACGAGCACGACCACTCCGACGATGTCTCCTGCAAGTTATCCGGATCCGGATCCGCTTCCGGGTCGGGCAAGTGCCATTGCTCCAAGAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

247

Amino Acids

26.28

Weight (kDa)

9.32

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	170, 545
AccB1I	GGYRCC	3 cut(s)	355, 605, 645
AccBSI	CCGCTC	1 cut(s)	619
AccII	CGCG	4 cut(s)	141, 234, 248, 629
AccIII	TCCGGA	3 cut(s)	403, 689, 695
AclWI	GGATC	4 cut(s)	687, 693, 700, 706
AcoI	YGGCCR	3 cut(s)	214, 525, 594
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	228, 708, 738
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	76, 184
AjnI	CCWGG	2 cut(s)	51, 443
AluBI	AGCT	4 cut(s)	21, 345, 507, 562
AluI	AGCT	4 cut(s)	21, 345, 507, 562
Alw21I	GWGCWC	3 cut(s)	90, 509, 657
Alw26I	GTCTC	7 cut(s)	178, 401, 502, 531, 553, 604, 679
AlwI	GGATC	4 cut(s)	687, 693, 700, 706
Aor13HI	TCCGGA	3 cut(s)	403, 689, 695
AoxI	GGCC	8 cut(s)	45, 57, 214, 446, 459, 525, 588, 594
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	3 cut(s)	234, 608, 631
AspS9I	GGNCC	3 cut(s)	210, 236, 589
AsuC2I	CCSGG	4 cut(s)	223, 371, 593, 709
AsuHPI	GGTGA	3 cut(s)	101, 433, 523
AvaII	GGWCC	2 cut(s)	210, 236
BamHI	GGATCC	2 cut(s)	692, 698
BanI	GGYRCC	3 cut(s)	355, 605, 645
BanII	GRGCYC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	3 cut(s)	90, 509, 657
BccI	CCATC	3 cut(s)	25, 56, 536
BceAI	ACGGC	4 cut(s)	289, 571, 581, 616
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	2 cut(s)	53, 445
BcnI	CCSGG	4 cut(s)	223, 371, 593, 709
BcoDI	GTCTC	7 cut(s)	178, 401, 502, 531, 553, 604, 679
BfoI	RGCGCY	1 cut(s)	609
BisI	GCNGC	3 cut(s)	60, 246, 627
BlsI	GCNGC	3 cut(s)	61, 247, 628
Bme1390I	CCNGG	6 cut(s)	53, 223, 371, 445, 593, 709
Bme18I	GGWCC	2 cut(s)	210, 236
BmgT120I	GGNCC	3 cut(s)	210, 236, 589
BmrFI	CCNGG	6 cut(s)	53, 223, 371, 445, 593, 709
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
BpuEI	CTTGAG	1 cut(s)	361
BpuMI	CCSGG	4 cut(s)	223, 371, 593, 709
BsaBI	GATNNNNATC	1 cut(s)	697
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	369, 591
BsaWI	WCCGGW	6 cut(s)	207, 238, 403, 533, 689, 695
BsaXI	ACNNNNNCTCC	8 cut(s)	116, 146, 158, 188, 647, 659, 677, 689
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 708, 738
Bse118I	RCCGGY	2 cut(s)	212, 238
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	2 cut(s)	573, 724
Bse8I	GATNNNNATC	1 cut(s)	697
BseAI	TCCGGA	3 cut(s)	403, 689, 695
BseBI	CCWGG	2 cut(s)	53, 445
BseDI	CCNNGG	2 cut(s)	369, 591
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	697
BseLI	CCNNNNNNNGG	3 cut(s)	228, 708, 738
BseMI	GCAATG	2 cut(s)	573, 724
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	4 cut(s)	124, 249, 308, 372
BseX3I	CGGCCG	1 cut(s)	594
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	4 cut(s)	141, 234, 248, 629
Bsh1285I	CGRYCG	2 cut(s)	243, 597
BshFI	GGCC	8 cut(s)	47, 59, 216, 448, 461, 527, 590, 596
BshNI	GGYRCC	3 cut(s)	355, 605, 645
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	2 cut(s)	243, 597
BsiHKAI	GWGCWC	3 cut(s)	90, 509, 657
BslI	CCNNNNNNNGG	3 cut(s)	228, 708, 738
BsmAI	GTCTC	7 cut(s)	178, 401, 502, 531, 553, 604, 679
BsmBI	CGTCTC	4 cut(s)	178, 502, 553, 604
BsnI	GGCC	8 cut(s)	47, 59, 216, 448, 461, 527, 590, 596
Bsp1286I	GDGCHC	3 cut(s)	90, 509, 657
Bsp13I	TCCGGA	3 cut(s)	403, 689, 695
Bsp143I	GATC	3 cut(s)	393, 692, 698
BspANI	GGCC	8 cut(s)	47, 59, 216, 448, 461, 527, 590, 596
BspEI	TCCGGA	3 cut(s)	403, 689, 695
BspFNI	CGCG	4 cut(s)	141, 234, 248, 629
BspPI	GGATC	4 cut(s)	687, 693, 700, 706
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	3 cut(s)	355, 605, 645
BsrBI	CCGCTC	1 cut(s)	619
BsrDI	GCAATG	2 cut(s)	573, 724
BsrFI	RCCGGY	2 cut(s)	212, 238
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	2 cut(s)	212, 238
BssECI	CCNNGG	2 cut(s)	369, 591
BssMI	GATC	3 cut(s)	393, 692, 698
BssNI	GRCGYC	1 cut(s)	606
BssSI	CACGAG	1 cut(s)	650
Bst2BI	CACGAG	1 cut(s)	650
Bst2UI	CCWGG	2 cut(s)	53, 445
Bst4CI	ACNGT	2 cut(s)	120, 172
Bst6I	CTCTTC	2 cut(s)	71, 326
BstACI	GRCGYC	1 cut(s)	606
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	4 cut(s)	141, 234, 248, 629
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	3 cut(s)	234, 608, 631
BstKTI	GATC	3 cut(s)	396, 695, 701
BstMAI	GTCTC	7 cut(s)	178, 401, 502, 531, 553, 604, 679
BstMBI	GATC	3 cut(s)	393, 692, 698
BstMCI	CGRYCG	2 cut(s)	243, 597
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 362, 371, 386
BstNI	CCWGG	2 cut(s)	53, 445
BstSCI	CCNGG	6 cut(s)	51, 221, 369, 443, 591, 707
BstUI	CGCG	4 cut(s)	141, 234, 248, 629
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	692, 698
BstYI	RGATCY	2 cut(s)	692, 698
BstZI	CGGCCG	1 cut(s)	594
BsuRI	GGCC	8 cut(s)	47, 59, 216, 448, 461, 527, 590, 596
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	560
CfoI	GCGC	3 cut(s)	234, 608, 631
Cfr10I	RCCGGY	2 cut(s)	212, 238
Cfr13I	GGNCC	3 cut(s)	210, 236, 589
CpoI	CGGWCCG	2 cut(s)	210, 236
CseI	GACGC	3 cut(s)	439, 484, 535
Csp6I	GTAC	1 cut(s)	477
CspAI	ACCGGT	1 cut(s)	238
CspI	CGGWCCG	2 cut(s)	210, 236
CviAII	CATG	2 cut(s)	82, 427
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	1 cut(s)	471
DinI	GGCGCC	1 cut(s)	607
DpnI	GATC	3 cut(s)	395, 694, 700
DpnII	GATC	3 cut(s)	393, 692, 698
DrdI	GACNNNNNNGTC	2 cut(s)	170, 545
DseDI	GACNNNNNNGTC	2 cut(s)	170, 545
EaeI	YGGCCR	3 cut(s)	214, 525, 594
EagI	CGGCCG	1 cut(s)	594
Eam1104I	CTCTTC	2 cut(s)	71, 326
EarI	CTCTTC	2 cut(s)	71, 326
EciI	GGCGGA	2 cut(s)	291, 613
Ecl136II	GAGCTC	1 cut(s)	507
EclXI	CGGCCG	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	509
Eco47I	GGWCC	2 cut(s)	210, 236
Eco52I	CGGCCG	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	51, 443
EcoT38I	GRGCYC	1 cut(s)	509
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
Esp3I	CGTCTC	4 cut(s)	178, 502, 553, 604
FaeI	CATG	2 cut(s)	85, 430
FaiI	YATR	3 cut(s)	83, 428, 518
FatI	CATG	2 cut(s)	81, 426
Fnu4HI	GCNGC	3 cut(s)	60, 246, 627
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	3 cut(s)	60, 246, 627
GlaI	GCGC	3 cut(s)	233, 607, 630
GluI	GCNGC	3 cut(s)	60, 246, 627
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	8 cut(s)	47, 59, 216, 448, 461, 527, 590, 596
HgaI	GACGC	3 cut(s)	439, 484, 535
HhaI	GCGC	3 cut(s)	234, 608, 631
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	85, 430
Hin6I	GCGC	3 cut(s)	232, 606, 629
HinP1I	GCGC	3 cut(s)	232, 606, 629
HinfI	GANTC	2 cut(s)	94, 583
HphI	GGTGA	3 cut(s)	101, 433, 523
Hpy166II	GTNNAC	3 cut(s)	145, 309, 477
Hpy188I	TCNGA	5 cut(s)	27, 204, 393, 582, 667
Hpy188III	TCNNGA	3 cut(s)	404, 690, 696
Hpy8I	GTNNAC	3 cut(s)	145, 309, 477
Hpy99I	CGWCG	4 cut(s)	505, 514, 526, 671
HpyAV	CCTTC	2 cut(s)	209, 732
HpyCH4III	ACNGT	2 cut(s)	120, 172
HpyCH4V	TGCA	2 cut(s)	150, 681
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 362, 371, 386
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	2 cut(s)	85, 430
HspAI	GCGC	3 cut(s)	232, 606, 629
KasI	GGCGCC	1 cut(s)	605
Kpn2I	TCCGGA	3 cut(s)	403, 689, 695
Kzo9I	GATC	3 cut(s)	393, 692, 698
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	9 cut(s)	85, 262, 355, 370, 385, 394, 406, 583, 734
LweI	GCATC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	395, 694, 700
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	3 cut(s)	393, 692, 698
MflI	RGATCY	2 cut(s)	692, 698
MhlI	GDGCHC	3 cut(s)	90, 509, 657
MluCI	AATT	1 cut(s)	412
Mly113I	GGCGCC	1 cut(s)	606
MmeI	TCCRAC	2 cut(s)	576, 690
MroI	TCCGGA	3 cut(s)	403, 689, 695
MseI	TTAA	1 cut(s)	636
MspR9I	CCNGG	6 cut(s)	53, 223, 371, 445, 593, 709
MvaI	CCWGG	2 cut(s)	53, 445
MvnI	CGCG	4 cut(s)	141, 234, 248, 629
MwoI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 362, 371, 386
NarI	GGCGCC	1 cut(s)	606
NciI	CCSGG	4 cut(s)	223, 371, 593, 709
NdeII	GATC	3 cut(s)	393, 692, 698
NlaIII	CATG	2 cut(s)	85, 430
PceI	AGGCCT	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	5 cut(s)	492, 506, 509, 518, 663
PfeI	GAWTC	2 cut(s)	94, 583
PflFI	GACNNNGTC	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	51
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	61, 247, 628
PluTI	GGCGCC	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	509
Psp6I	CCWGG	2 cut(s)	51, 443
PspGI	CCWGG	2 cut(s)	51, 443
PspPI	GGNCC	3 cut(s)	210, 236, 589
PsuI	RGATCY	2 cut(s)	692, 698
PsyI	GACNNNGTC	1 cut(s)	671
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
Rsr2I	CGGWCCG	2 cut(s)	210, 236
RsrII	CGGWCCG	2 cut(s)	210, 236
SacI	GAGCTC	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	3 cut(s)	60, 246, 627
Sau3AI	GATC	3 cut(s)	393, 692, 698
Sau96I	GGNCC	3 cut(s)	210, 236, 589
ScrFI	CCNGG	6 cut(s)	53, 223, 371, 445, 593, 709
SduI	GDGCHC	3 cut(s)	90, 509, 657
SfaNI	GCATC	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	607
SinI	GGWCC	2 cut(s)	210, 236
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	412
SseBI	AGGCCT	1 cut(s)	448
SspDI	GGCGCC	1 cut(s)	605
SstI	GAGCTC	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	6 cut(s)	51, 221, 369, 443, 591, 707
TaaI	ACNGT	2 cut(s)	120, 172
TaqI	TCGA	2 cut(s)	486, 503
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	1 cut(s)	412
TauI	GCSGC	3 cut(s)	62, 248, 629
TfiI	GAWTC	2 cut(s)	94, 583
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TspDTI	ATGAA	1 cut(s)	562
Tth111I	GACNNNGTC	1 cut(s)	671
VpaK11BI	GGWCC	2 cut(s)	210, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.