Rh6DG449500
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
62224438 .. 62225913
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG449500.1

Sequence Viewer

Length: 1020 bp
ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAAAAGGCCATCCAGGAGGCCGCATCGCAAGGCTTGAAGAGCATGGAGCACCTGATTCGTTACCTCTCTCACCAGCAACAGTCTAACCAGCCCTCCTCTCGCGTGGACTGCACCGACCTCACAGACCACACCGTCTCCAAGTTCAAAAAGGTCATTTCCCTTCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCGGTCGCCGCGGTTCCGGCTCCTCATCATCATCAGTTCTCTTCTTCTTCTTCTCCGCCGTCCACCTCTCTCCTCTTCCCTCCCTCCCAGACCTTGAGCTTGGCTCCGGCACCAGTCGCTCCCCCGGCGATTGCTCCTCCGGCTCCGGTCAAGGCTCCGGAGACTAATTTTGCTCATTCCATGACGCTTGACTTCACCAGGCCTAATGCTCTGGCCTCAAACCCTAAGTGTACCGACATCGAGTTCAGCGTCTCGTCGAGCTCGTCGTTTATGTCGTCGGCCATCACCGGAGACAATAGCGTCTCCAACGGCAAGCTCGGTCTGTTCATTGCTCCCAATCCGGCCCCGGCCGTCTCCGGCGCCAAGCCTCCGCTCTCCGCCGCGCCGTTTAAGAAGCGGTGCCACGAGCACGACCACTCCGACGATGTCTCCTGCAAGTTATCCGGATCCGGATCCGCTTCCGGGTCGGGCAAGTGCCACTGCTCCAAGAGAAGGAAAAATCGGGTGAAGAAAACAATCCGAGTCCCGGCGATTAGTTCAAAGATCGCCGATATTCCGCCGGACGAGTACTCCTGGAGAAAGTACGGCCAGAAGCCGATCAAAGGCTCACCTTACCCAAGGGGTTATTACAAGTGTAGTACAGTGAGGGGGTGTCCGGCAAGAAAACACGTGGAGCGAGCACCGGACGATCCGGCGATGCTGATCGTAACGTACGAAGGGGAGCATCGACACGCTCCGGATAATATGAGTGGCGGAGTTGGGATGGTATTCGAGTCAACCTGA

Protein Analysis

339

Amino Acids

36.54

Weight (kDa)

9.53

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 210 - 263 1.2e-19 Plant zinc cluster domain
WRKY PF03106 267 - 323 8e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 536
AccB1I GGYRCC 3 cut(s) 346, 596, 636
AccBSI CCGCTC 1 cut(s) 610
AccII CGCG 4 cut(s) 141, 234, 248, 620
AccIII TCCGGA 4 cut(s) 394, 680, 686, 973
AclWI GGATC 5 cut(s) 678, 684, 691, 697, 920
AcoI YGGCCR 4 cut(s) 214, 516, 585, 823
AcvI CACGTG 1 cut(s) 907
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 5 cut(s) 469, 806, 821, 877, 950
AfiI CCNNNNNNNGG 5 cut(s) 228, 699, 729, 763, 839
AflIII ACRYGT 1 cut(s) 904
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 76, 184, 777
AjnI CCWGG 3 cut(s) 51, 434, 809
AluBI AGCT 4 cut(s) 21, 336, 498, 553
AluI AGCT 4 cut(s) 21, 336, 498, 553
Alw21I GWGCWC 4 cut(s) 90, 500, 648, 919
Alw26I GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
AlwI GGATC 5 cut(s) 678, 684, 691, 697, 920
Aor13HI TCCGGA 4 cut(s) 394, 680, 686, 973
AoxI GGCC 9 cut(s) 45, 57, 214, 437, 450, 516, 579, 585, 823
AsiGI ACCGGT 1 cut(s) 238
AspLEI GCGC 3 cut(s) 234, 599, 622
AspS9I GGNCC 3 cut(s) 210, 236, 580
AsuC2I CCSGG 5 cut(s) 223, 362, 584, 700, 764
AsuHPI GGTGA 5 cut(s) 101, 424, 514, 754, 837
AvaII GGWCC 2 cut(s) 210, 236
BamHI GGATCC 2 cut(s) 683, 689
BanI GGYRCC 3 cut(s) 346, 596, 636
BanII GRGCYC 1 cut(s) 500
BauI CACGAG 1 cut(s) 641
BbrPI CACGTG 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 4 cut(s) 90, 500, 648, 919
BccI CCATC 4 cut(s) 25, 56, 527, 994
BceAI ACGGC 5 cut(s) 280, 562, 572, 607, 838
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 3 cut(s) 53, 436, 811
BcnI CCSGG 5 cut(s) 223, 362, 584, 700, 764
BcoDI GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
BfoI RGCGCY 1 cut(s) 600
BisI GCNGC 3 cut(s) 60, 246, 618
BlsI GCNGC 3 cut(s) 61, 247, 619
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 8 cut(s) 53, 223, 362, 436, 584, 700, 764, 811
Bme18I GGWCC 2 cut(s) 210, 236
BmgT120I GGNCC 3 cut(s) 210, 236, 580
BmrFI CCNGG 8 cut(s) 53, 223, 362, 436, 584, 700, 764, 811
BmsI GCATC 3 cut(s) 71, 924, 970
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 1 cut(s) 832
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 5 cut(s) 223, 362, 584, 700, 764
BsaAI YACGTR 1 cut(s) 907
BsaBI GATNNNNATC 2 cut(s) 688, 938
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 246, 360, 582, 854
BsaWI WCCGGW 9 cut(s) 207, 238, 382, 394, 524, 680, 686, 919, 973
Bsc4I CCNNNNNNNGG 5 cut(s) 228, 699, 729, 763, 839
Bse118I RCCGGY 2 cut(s) 212, 238
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 564
Bse8I GATNNNNATC 2 cut(s) 688, 938
BseAI TCCGGA 4 cut(s) 394, 680, 686, 973
BseBI CCWGG 3 cut(s) 53, 436, 811
BseDI CCNNGG 4 cut(s) 246, 360, 582, 854
BseGI GGATG 2 cut(s) 48, 1005
BseJI GATNNNNATC 2 cut(s) 688, 938
BseLI CCNNNNNNNGG 5 cut(s) 228, 699, 729, 763, 839
BseMI GCAATG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 4 cut(s) 124, 249, 299, 363
BseX3I CGGCCG 1 cut(s) 585
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 4 cut(s) 141, 234, 248, 620
Bsh1285I CGRYCG 2 cut(s) 243, 588
BshFI GGCC 9 cut(s) 47, 59, 216, 439, 452, 518, 581, 587, 825
BshNI GGYRCC 3 cut(s) 346, 596, 636
BshTI ACCGGT 1 cut(s) 238
BsiEI CGRYCG 2 cut(s) 243, 588
BsiHKAI GWGCWC 4 cut(s) 90, 500, 648, 919
BsiWI CGTACG 1 cut(s) 948
BslFI GGGAC 1 cut(s) 746
BslI CCNNNNNNNGG 5 cut(s) 228, 699, 729, 763, 839
BsmAI GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
BsmBI CGTCTC 4 cut(s) 178, 493, 544, 595
BsmFI GGGAC 1 cut(s) 746
BsnI GGCC 9 cut(s) 47, 59, 216, 439, 452, 518, 581, 587, 825
Bsp1286I GDGCHC 4 cut(s) 90, 500, 648, 919
Bsp13I TCCGGA 4 cut(s) 394, 680, 686, 973
Bsp143I GATC 6 cut(s) 683, 689, 780, 834, 925, 939
BspANI GGCC 9 cut(s) 47, 59, 216, 439, 452, 518, 581, 587, 825
BspEI TCCGGA 4 cut(s) 394, 680, 686, 973
BspFNI CGCG 4 cut(s) 141, 234, 248, 620
BspPI GGATC 5 cut(s) 678, 684, 691, 697, 920
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 3 cut(s) 346, 596, 636
BsrBI CCGCTC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 564
BsrFI RCCGGY 2 cut(s) 212, 238
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 2 cut(s) 212, 238
BssECI CCNNGG 4 cut(s) 246, 360, 582, 854
BssMI GATC 6 cut(s) 683, 689, 780, 834, 925, 939
BssNI GRCGYC 1 cut(s) 597
BssSI CACGAG 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 854
Bst2BI CACGAG 1 cut(s) 641
Bst2UI CCWGG 3 cut(s) 53, 436, 811
Bst4CI ACNGT 3 cut(s) 120, 172, 880
Bst6I CTCTTC 3 cut(s) 71, 283, 317
BstACI GRCGYC 1 cut(s) 597
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 2 cut(s) 551, 915
BstDEI CTNAG 1 cut(s) 462
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 48, 1005
BstFNI CGCG 4 cut(s) 141, 234, 248, 620
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 3 cut(s) 234, 599, 622
BstKTI GATC 6 cut(s) 686, 692, 783, 837, 928, 942
BstMAI GTCTC 7 cut(s) 178, 392, 493, 522, 544, 595, 670
BstMBI GATC 6 cut(s) 683, 689, 780, 834, 925, 939
BstMCI CGRYCG 2 cut(s) 243, 588
BstMWI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 353, 362, 377
BstNI CCWGG 3 cut(s) 53, 436, 811
BstSCI CCNGG 8 cut(s) 51, 221, 360, 434, 582, 698, 762, 809
BstUI CGCG 4 cut(s) 141, 234, 248, 620
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 683, 689
BstYI RGATCY 2 cut(s) 683, 689
BstZI CGGCCG 1 cut(s) 585
BsuRI GGCC 9 cut(s) 47, 59, 216, 439, 452, 518, 581, 587, 825
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 2 cut(s) 48, 947
BtsCI GGATG 2 cut(s) 48, 1005
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 2 cut(s) 715, 885
Cac8I GCNNGC 2 cut(s) 551, 915
CfoI GCGC 3 cut(s) 234, 599, 622
Cfr10I RCCGGY 2 cut(s) 212, 238
Cfr13I GGNCC 3 cut(s) 210, 236, 580
Cfr42I CCGCGG 1 cut(s) 249
CpoI CGGWCCG 2 cut(s) 210, 236
CseI GACGC 3 cut(s) 430, 475, 526
Csp6I GTAC 5 cut(s) 468, 805, 820, 876, 949
CspAI ACCGGT 1 cut(s) 238
CspI CGGWCCG 2 cut(s) 210, 236
CviAII CATG 2 cut(s) 82, 418
CviQI GTAC 5 cut(s) 468, 805, 820, 876, 949
DdeI CTNAG 1 cut(s) 462
DinI GGCGCC 1 cut(s) 598
DpnI GATC 6 cut(s) 685, 691, 782, 836, 927, 941
DpnII GATC 6 cut(s) 683, 689, 780, 834, 925, 939
DrdI GACNNNNNNGTC 2 cut(s) 170, 536
DseDI GACNNNNNNGTC 2 cut(s) 170, 536
EaeI YGGCCR 4 cut(s) 214, 516, 585, 823
EagI CGGCCG 1 cut(s) 585
Eam1104I CTCTTC 3 cut(s) 71, 283, 317
EarI CTCTTC 3 cut(s) 71, 283, 317
EciI GGCGGA 4 cut(s) 282, 604, 783, 1005
Ecl136II GAGCTC 1 cut(s) 498
EclXI CGGCCG 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 854
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 500
Eco47I GGWCC 2 cut(s) 210, 236
Eco52I CGGCCG 1 cut(s) 585
Eco53kI GAGCTC 1 cut(s) 498
Eco72I CACGTG 1 cut(s) 907
EcoICRI GAGCTC 1 cut(s) 498
EcoRII CCWGG 3 cut(s) 51, 434, 809
EcoT14I CCWWGG 1 cut(s) 854
EcoT38I GRGCYC 1 cut(s) 500
EgeI GGCGCC 1 cut(s) 598
EheI GGCGCC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 854
Esp3I CGTCTC 4 cut(s) 178, 493, 544, 595
FaeI CATG 2 cut(s) 85, 421
FaiI YATR 4 cut(s) 83, 419, 509, 983
FaqI GGGAC 1 cut(s) 746
FatI CATG 2 cut(s) 81, 417
Fnu4HI GCNGC 3 cut(s) 60, 246, 618
FokI GGATG 2 cut(s) 35, 1012
FriOI GRGCYC 1 cut(s) 500
Fsp4HI GCNGC 3 cut(s) 60, 246, 618
GlaI GCGC 3 cut(s) 233, 598, 621
GluI GCNGC 3 cut(s) 60, 246, 618
GsuI CTGGAG 1 cut(s) 832
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 9 cut(s) 47, 59, 216, 439, 452, 518, 581, 587, 825
HgaI GACGC 3 cut(s) 430, 475, 526
HhaI GCGC 3 cut(s) 234, 599, 622
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 2 cut(s) 85, 421
Hin6I GCGC 3 cut(s) 232, 597, 620
HinP1I GCGC 3 cut(s) 232, 597, 620
HincII GTYRAC 1 cut(s) 1014
HindII GTYRAC 1 cut(s) 1014
HinfI GANTC 3 cut(s) 94, 759, 1010
HphI GGTGA 5 cut(s) 101, 424, 514, 754, 837
Hpy166II GTNNAC 4 cut(s) 145, 300, 468, 1014
Hpy188I TCNGA 4 cut(s) 27, 204, 658, 758
Hpy188III TCNNGA 4 cut(s) 395, 681, 687, 974
Hpy8I GTNNAC 4 cut(s) 145, 300, 468, 1014
Hpy99I CGWCG 4 cut(s) 496, 505, 517, 662
HpyAV CCTTC 3 cut(s) 209, 723, 947
HpyCH4III ACNGT 3 cut(s) 120, 172, 880
HpyCH4IV ACGT 2 cut(s) 906, 947
HpyCH4V TGCA 2 cut(s) 150, 672
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 353, 362, 377
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 906, 947
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 2 cut(s) 85, 421
HspAI GCGC 3 cut(s) 232, 597, 620
KasI GGCGCC 1 cut(s) 596
Kpn2I TCCGGA 4 cut(s) 394, 680, 686, 973
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 6 cut(s) 683, 689, 780, 834, 925, 939
LguI GCTCTTC 1 cut(s) 71
LweI GCATC 3 cut(s) 71, 924, 970
MaeII ACGT 2 cut(s) 906, 947
MaeIII GTNAC 2 cut(s) 98, 943
MalI GATC 6 cut(s) 685, 691, 782, 836, 927, 941
MbiI CCGCTC 1 cut(s) 610
MboI GATC 6 cut(s) 683, 689, 780, 834, 925, 939
MboII GAAGA 9 cut(s) 40, 47, 88, 270, 273, 276, 279, 304, 757
MflI RGATCY 2 cut(s) 683, 689
MhlI GDGCHC 4 cut(s) 90, 500, 648, 919
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 597
MlyI GAGTC 2 cut(s) 768, 1019
MmeI TCCRAC 2 cut(s) 567, 681
MroI TCCGGA 4 cut(s) 394, 680, 686, 973
MseI TTAA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 8 cut(s) 53, 223, 362, 436, 584, 700, 764, 811
MvaI CCWGG 3 cut(s) 53, 436, 811
MvnI CGCG 4 cut(s) 141, 234, 248, 620
MwoI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 353, 362, 377
NarI GGCGCC 1 cut(s) 597
NciI CCSGG 5 cut(s) 223, 362, 584, 700, 764
NdeII GATC 6 cut(s) 683, 689, 780, 834, 925, 939
NlaIII CATG 2 cut(s) 85, 421
PceI AGGCCT 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 6 cut(s) 483, 497, 500, 509, 654, 948
PfeI GAWTC 1 cut(s) 94
Pfl23II CGTACG 1 cut(s) 948
PflFI GACNNNGTC 1 cut(s) 662
PfoI TCCNGGA 2 cut(s) 51, 809
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 3 cut(s) 61, 247, 619
PleI GAGTC 2 cut(s) 767, 1018
PluTI GGCGCC 1 cut(s) 600
PmaCI CACGTG 1 cut(s) 907
PmlI CACGTG 1 cut(s) 907
PpsI GAGTC 2 cut(s) 767, 1018
Ppu21I YACGTR 1 cut(s) 907
Psp124BI GAGCTC 1 cut(s) 500
Psp6I CCWGG 3 cut(s) 51, 434, 809
PspCI CACGTG 1 cut(s) 907
PspGI CCWGG 3 cut(s) 51, 434, 809
PspLI CGTACG 1 cut(s) 948
PspPI GGNCC 3 cut(s) 210, 236, 580
PsuI RGATCY 2 cut(s) 683, 689
PsyI GACNNNGTC 1 cut(s) 662
RsaI GTAC 5 cut(s) 469, 806, 821, 877, 950
RsaNI GTAC 5 cut(s) 468, 805, 820, 876, 949
Rsr2I CGGWCCG 2 cut(s) 210, 236
RsrII CGGWCCG 2 cut(s) 210, 236
SacI GAGCTC 1 cut(s) 500
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 3 cut(s) 60, 246, 618
Sau3AI GATC 6 cut(s) 683, 689, 780, 834, 925, 939
Sau96I GGNCC 3 cut(s) 210, 236, 580
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 2 cut(s) 768, 1019
ScrFI CCNGG 8 cut(s) 53, 223, 362, 436, 584, 700, 764, 811
SduI GDGCHC 4 cut(s) 90, 500, 648, 919
SfaNI GCATC 3 cut(s) 71, 924, 970
SfoI GGCGCC 1 cut(s) 598
Sfr303I CCGCGG 1 cut(s) 249
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 210, 236
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 1 cut(s) 403
SseBI AGGCCT 1 cut(s) 439
SspDI GGCGCC 1 cut(s) 596
SstI GAGCTC 1 cut(s) 500
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 8 cut(s) 51, 221, 360, 434, 582, 698, 762, 809
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 3 cut(s) 120, 172, 880
TaiI ACGT 2 cut(s) 909, 950
TaqI TCGA 4 cut(s) 477, 494, 964, 1008
TaqII GACCGA 1 cut(s) 545
TasI AATT 1 cut(s) 403
TatI WGTACW 2 cut(s) 804, 875
TauI GCSGC 3 cut(s) 62, 248, 620
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 722, 885
TspDTI ATGAA 1 cut(s) 553
TspRI CASTG 2 cut(s) 722, 885
Tth111I GACNNNGTC 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 210, 236
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.