Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

63591226 .. 63593798

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG462800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAAAAGGCCATCCAGGAGGCCGCATCGCAAGGCTTGAAGAGCATGGAGCACCTGATTCGTTACCTCTCTCACCAGCAACACTCTAACCAGCCCTCCTCTCGCGTGGACTGCACCGACCTCACAGACCACACCGTCTCCAAGTTCAAAAAAGTCATTTCCCTTCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCGGTCGCCGCAGTTCCGGCTCCTCATCATCATCAGTTCTCTTCTTCTTCTCCGCCGTCCACCTCTCTCCTCTTCCCTCCCTCCCAGACCTTGAGCTTGGCTCCGGCACCAGTCGCTCCCCCGGCGATTGCTCCTCCGGCTCCGGTCAAGGCTCCGGAGACTAATTTTGCTCATTCCATGACGCTTGACTTCACCAGGCCTAATGCTCTGGCCTCAAACCCTAAGTGTACCGACATCGAGTTCAGCGTCTCGTCGAGCTCGTCGTTTATGTCGTCGGCCATCACCGGAGACAATAGCGTCTCCAACGGCAAGCTCGGTCTGTTCATTGCTCCGAATCCGGCCCCGGCCGTCTCCGGCGCCAAGCCTCCGCTCTCCGCCGCGCCGTTTAAGAAGCGGTGCCACGAGCACGACCACTCCGACGATGTCTCCTGCAAGTTATCCGGATCCGGATCCGCTTCCGGGTCGGGCAAGTGCCATTGCTCCAAGAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

243

Amino Acids

25.8

Weight (kDa)

9.34

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	170, 533
AccB1I	GGYRCC	3 cut(s)	343, 593, 633
AccBSI	CCGCTC	1 cut(s)	607
AccII	CGCG	3 cut(s)	141, 234, 617
AccIII	TCCGGA	3 cut(s)	391, 677, 683
AclWI	GGATC	4 cut(s)	675, 681, 688, 694
AcoI	YGGCCR	3 cut(s)	214, 513, 582
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	3 cut(s)	228, 696, 726
AgeI	ACCGGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	76, 184
AjnI	CCWGG	2 cut(s)	51, 431
AluBI	AGCT	4 cut(s)	21, 333, 495, 550
AluI	AGCT	4 cut(s)	21, 333, 495, 550
Alw21I	GWGCWC	3 cut(s)	90, 497, 645
Alw26I	GTCTC	7 cut(s)	178, 389, 490, 519, 541, 592, 667
AlwI	GGATC	4 cut(s)	675, 681, 688, 694
Aor13HI	TCCGGA	3 cut(s)	391, 677, 683
AoxI	GGCC	8 cut(s)	45, 57, 214, 434, 447, 513, 576, 582
AsiGI	ACCGGT	1 cut(s)	238
AspLEI	GCGC	3 cut(s)	234, 596, 619
AspS9I	GGNCC	3 cut(s)	210, 236, 577
AsuC2I	CCSGG	4 cut(s)	223, 359, 581, 697
AsuHPI	GGTGA	3 cut(s)	101, 421, 511
AvaII	GGWCC	2 cut(s)	210, 236
BamHI	GGATCC	2 cut(s)	680, 686
BanI	GGYRCC	3 cut(s)	343, 593, 633
BanII	GRGCYC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	3 cut(s)	90, 497, 645
BccI	CCATC	3 cut(s)	25, 56, 524
BceAI	ACGGC	4 cut(s)	277, 559, 569, 604
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	2 cut(s)	53, 433
BcnI	CCSGG	4 cut(s)	223, 359, 581, 697
BcoDI	GTCTC	7 cut(s)	178, 389, 490, 519, 541, 592, 667
BfoI	RGCGCY	1 cut(s)	597
BisI	GCNGC	3 cut(s)	60, 246, 615
BlsI	GCNGC	3 cut(s)	61, 247, 616
Bme1390I	CCNGG	6 cut(s)	53, 223, 359, 433, 581, 697
Bme18I	GGWCC	2 cut(s)	210, 236
BmgT120I	GGNCC	3 cut(s)	210, 236, 577
BmrFI	CCNGG	6 cut(s)	53, 223, 359, 433, 581, 697
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	4 cut(s)	223, 359, 581, 697
BsaBI	GATNNNNATC	1 cut(s)	685
BsaHI	GRCGYC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	357, 579
BsaWI	WCCGGW	7 cut(s)	207, 238, 379, 391, 521, 677, 683
BsaXI	ACNNNNNCTCC	8 cut(s)	116, 146, 158, 188, 635, 647, 665, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 696, 726
Bse118I	RCCGGY	2 cut(s)	212, 238
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	2 cut(s)	561, 712
Bse8I	GATNNNNATC	1 cut(s)	685
BseAI	TCCGGA	3 cut(s)	391, 677, 683
BseBI	CCWGG	2 cut(s)	53, 433
BseDI	CCNNGG	2 cut(s)	357, 579
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	685
BseLI	CCNNNNNNNGG	3 cut(s)	228, 696, 726
BseMI	GCAATG	2 cut(s)	561, 712
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	4 cut(s)	124, 249, 296, 360
BseX3I	CGGCCG	1 cut(s)	582
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	3 cut(s)	141, 234, 617
Bsh1285I	CGRYCG	2 cut(s)	243, 585
BshFI	GGCC	8 cut(s)	47, 59, 216, 436, 449, 515, 578, 584
BshNI	GGYRCC	3 cut(s)	343, 593, 633
BshTI	ACCGGT	1 cut(s)	238
BsiEI	CGRYCG	2 cut(s)	243, 585
BsiHKAI	GWGCWC	3 cut(s)	90, 497, 645
BslI	CCNNNNNNNGG	3 cut(s)	228, 696, 726
BsmAI	GTCTC	7 cut(s)	178, 389, 490, 519, 541, 592, 667
BsmBI	CGTCTC	4 cut(s)	178, 490, 541, 592
BsnI	GGCC	8 cut(s)	47, 59, 216, 436, 449, 515, 578, 584
Bsp1286I	GDGCHC	3 cut(s)	90, 497, 645
Bsp13I	TCCGGA	3 cut(s)	391, 677, 683
Bsp143I	GATC	2 cut(s)	680, 686
BspANI	GGCC	8 cut(s)	47, 59, 216, 436, 449, 515, 578, 584
BspEI	TCCGGA	3 cut(s)	391, 677, 683
BspFNI	CGCG	3 cut(s)	141, 234, 617
BspPI	GGATC	4 cut(s)	675, 681, 688, 694
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	3 cut(s)	343, 593, 633
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	2 cut(s)	561, 712
BsrFI	RCCGGY	2 cut(s)	212, 238
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	2 cut(s)	212, 238
BssECI	CCNNGG	2 cut(s)	357, 579
BssMI	GATC	2 cut(s)	680, 686
BssNI	GRCGYC	1 cut(s)	594
BssSI	CACGAG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	638
Bst2UI	CCWGG	2 cut(s)	53, 433
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	3 cut(s)	71, 283, 314
BstACI	GRCGYC	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	3 cut(s)	141, 234, 617
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	3 cut(s)	234, 596, 619
BstKTI	GATC	2 cut(s)	683, 689
BstMAI	GTCTC	7 cut(s)	178, 389, 490, 519, 541, 592, 667
BstMBI	GATC	2 cut(s)	680, 686
BstMCI	CGRYCG	2 cut(s)	243, 585
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 350, 359, 374
BstNI	CCWGG	2 cut(s)	53, 433
BstSCI	CCNGG	6 cut(s)	51, 221, 357, 431, 579, 695
BstUI	CGCG	3 cut(s)	141, 234, 617
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	680, 686
BstYI	RGATCY	2 cut(s)	680, 686
BstZI	CGGCCG	1 cut(s)	582
BsuRI	GGCC	8 cut(s)	47, 59, 216, 436, 449, 515, 578, 584
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	3 cut(s)	234, 596, 619
Cfr10I	RCCGGY	2 cut(s)	212, 238
Cfr13I	GGNCC	3 cut(s)	210, 236, 577
CpoI	CGGWCCG	2 cut(s)	210, 236
CseI	GACGC	3 cut(s)	427, 472, 523
Csp6I	GTAC	1 cut(s)	465
CspAI	ACCGGT	1 cut(s)	238
CspI	CGGWCCG	2 cut(s)	210, 236
CviAII	CATG	2 cut(s)	82, 415
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	1 cut(s)	459
DinI	GGCGCC	1 cut(s)	595
DpnI	GATC	2 cut(s)	682, 688
DpnII	GATC	2 cut(s)	680, 686
DrdI	GACNNNNNNGTC	2 cut(s)	170, 533
DseDI	GACNNNNNNGTC	2 cut(s)	170, 533
EaeI	YGGCCR	3 cut(s)	214, 513, 582
EagI	CGGCCG	1 cut(s)	582
Eam1104I	CTCTTC	3 cut(s)	71, 283, 314
EarI	CTCTTC	3 cut(s)	71, 283, 314
EciI	GGCGGA	2 cut(s)	279, 601
Ecl136II	GAGCTC	1 cut(s)	495
EclXI	CGGCCG	1 cut(s)	582
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	210, 236
Eco52I	CGGCCG	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	51, 431
EcoT38I	GRGCYC	1 cut(s)	497
EgeI	GGCGCC	1 cut(s)	595
EheI	GGCGCC	1 cut(s)	595
Esp3I	CGTCTC	4 cut(s)	178, 490, 541, 592
FaeI	CATG	2 cut(s)	85, 418
FaiI	YATR	3 cut(s)	83, 416, 506
FatI	CATG	2 cut(s)	81, 414
Fnu4HI	GCNGC	3 cut(s)	60, 246, 615
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	60, 246, 615
GlaI	GCGC	3 cut(s)	233, 595, 618
GluI	GCNGC	3 cut(s)	60, 246, 615
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	8 cut(s)	47, 59, 216, 436, 449, 515, 578, 584
HgaI	GACGC	3 cut(s)	427, 472, 523
HhaI	GCGC	3 cut(s)	234, 596, 619
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	2 cut(s)	85, 418
Hin6I	GCGC	3 cut(s)	232, 594, 617
HinP1I	GCGC	3 cut(s)	232, 594, 617
HinfI	GANTC	2 cut(s)	94, 571
HphI	GGTGA	3 cut(s)	101, 421, 511
Hpy166II	GTNNAC	3 cut(s)	145, 297, 465
Hpy188I	TCNGA	4 cut(s)	27, 204, 570, 655
Hpy188III	TCNNGA	3 cut(s)	392, 678, 684
Hpy8I	GTNNAC	3 cut(s)	145, 297, 465
Hpy99I	CGWCG	4 cut(s)	493, 502, 514, 659
HpyAV	CCTTC	2 cut(s)	209, 720
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	150, 669
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 350, 359, 374
HpyF3I	CTNAG	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	2 cut(s)	85, 418
HspAI	GCGC	3 cut(s)	232, 594, 617
KasI	GGCGCC	1 cut(s)	593
Kpn2I	TCCGGA	3 cut(s)	391, 677, 683
Kzo9I	GATC	2 cut(s)	680, 686
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	9 cut(s)	85, 262, 343, 358, 373, 382, 394, 571, 722
LweI	GCATC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	2 cut(s)	682, 688
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	2 cut(s)	680, 686
MboII	GAAGA	7 cut(s)	40, 47, 88, 270, 273, 276, 301
MflI	RGATCY	2 cut(s)	680, 686
MhlI	GDGCHC	3 cut(s)	90, 497, 645
MluCI	AATT	1 cut(s)	400
Mly113I	GGCGCC	1 cut(s)	594
MmeI	TCCRAC	2 cut(s)	564, 678
MroI	TCCGGA	3 cut(s)	391, 677, 683
MseI	TTAA	1 cut(s)	624
MspR9I	CCNGG	6 cut(s)	53, 223, 359, 433, 581, 697
MvaI	CCWGG	2 cut(s)	53, 433
MvnI	CGCG	3 cut(s)	141, 234, 617
MwoI	GCNNNNNNNGC	6 cut(s)	78, 147, 254, 350, 359, 374
NarI	GGCGCC	1 cut(s)	594
NciI	CCSGG	4 cut(s)	223, 359, 581, 697
NdeII	GATC	2 cut(s)	680, 686
NlaIII	CATG	2 cut(s)	85, 418
PceI	AGGCCT	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	5 cut(s)	480, 494, 497, 506, 651
PfeI	GAWTC	2 cut(s)	94, 571
PflFI	GACNNNGTC	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	51
PinAI	ACCGGT	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	61, 247, 616
PluTI	GGCGCC	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	51, 431
PspGI	CCWGG	2 cut(s)	51, 431
PspPI	GGNCC	3 cut(s)	210, 236, 577
PsuI	RGATCY	2 cut(s)	680, 686
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
Rsr2I	CGGWCCG	2 cut(s)	210, 236
RsrII	CGGWCCG	2 cut(s)	210, 236
SacI	GAGCTC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	3 cut(s)	60, 246, 615
Sau3AI	GATC	2 cut(s)	680, 686
Sau96I	GGNCC	3 cut(s)	210, 236, 577
ScrFI	CCNGG	6 cut(s)	53, 223, 359, 433, 581, 697
SduI	GDGCHC	3 cut(s)	90, 497, 645
SfaNI	GCATC	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	595
SinI	GGWCC	2 cut(s)	210, 236
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	1 cut(s)	400
SseBI	AGGCCT	1 cut(s)	436
SspDI	GGCGCC	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	497
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	6 cut(s)	51, 221, 357, 431, 579, 695
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	474, 491
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	1 cut(s)	400
TauI	GCSGC	3 cut(s)	62, 248, 617
TfiI	GAWTC	2 cut(s)	94, 571
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TspDTI	ATGAA	1 cut(s)	550
Tth111I	GACNNNGTC	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	210, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.