FvH4_2g36730
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
26838528 .. 26840942
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36730.t2

Sequence Viewer

Length: 1029 bp
ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAGAAGGCGATCCAGGAGGCCGCATCGCAAGGCTTGAAGAGCATGGAGCATCTGATCCGTTACCTCTCCCACCAGCAACAGACTAACCAAGCCTCCTCTCGCCTCGACTGCACCGACCTCACCGACCACACCGTCTCCAAGTTCAAAAAGGTCATTTCCTTGCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCGGTCGCGGTTCCGCCACATCATCATAATCAGTTGACTAACTCAAATCCCTCCACCTCTTCCTCCTCCGCCTCTCTCCCCTTCCCTCCCTCTCAGTCCCTCAGCCTCGCTCCGGCGCCGGTCGCGATCATTCCTCCGGCGCCGGTGAAGGCTCCGGAGGCTAATTTTGCTCACTCCCTGACGCTGGATTTCACCCGGCCTAACGTGCTGACGTCATCGAACCCTAAGTGCACCGACAACAACATCGAGTTCAGCGTCTCGTCCAGCTCGTCGTTCATGTCGTCGGCCATCACCGGCGACAACAGCGTCTCCAACGGCAAGCTCGGCCTGTTCATGTCTCAGAATCAGGCCCCTGCCGTCTCCGGCGCCAAGCCTCCGCTCTCCACGGCGGGGCCGTATAAGAAGCGGTGCCACGAGCACGATCACTCCGACGACGTCTCCTGCAAGCTCTCCGTGTCCGGATCCGCTTCCGGGTCGGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGGGTGAAGAAAACAATCCGAGTGCCGGCGATTAGTTCAAAGATCGCCGATATCCCGCCGGACGAGTACTCCTGGAGGAAGTACGGCCAGAAACCGATCAAAGGCTCACCTTACCCAAGGGGTTATTACAAGTGCAGTACAGTGAGGGGGTGTCCGGCGAGGAAACATGTGGAGCGAGCGCCGGATGATCCAGCAATGCTGATCGTAACTTACGAAGGGGAGCATCGGCACGCACCGGAGAATATGAGCGGGGGAGTTGGGTTGGTATTTGAGTCAGCCTGA

Protein Analysis

343

Amino Acids

37.06

Weight (kDa)

9.51

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 213 - 266 2.2e-19 Plant zinc cluster domain
WRKY PF03106 270 - 289 1.9e-06 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 542
AatII GACGTC 2 cut(s) 452, 675
AccB1I GGYRCC 4 cut(s) 352, 376, 602, 645
AccBSI CCGCTC 2 cut(s) 616, 996
AccII CGCG 3 cut(s) 234, 245, 362
AccIII TCCGGA 2 cut(s) 391, 695
AclWI GGATC 5 cut(s) 43, 88, 693, 706, 929
AcoI YGGCCR 3 cut(s) 214, 522, 832
AcyI GRCGYC 5 cut(s) 353, 377, 449, 603, 672
AfaI GTAC 3 cut(s) 815, 830, 886
AfiI CCNNNNNNNGG 8 cut(s) 228, 349, 421, 627, 708, 738, 772, 848
AflIII ACRYGT 1 cut(s) 913
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 76, 184, 786
AjnI CCWGG 2 cut(s) 51, 818
AluBI AGCT 4 cut(s) 21, 504, 559, 685
AluI AGCT 4 cut(s) 21, 504, 559, 685
Alw21I GWGCWC 2 cut(s) 470, 657
Alw26I GTCTC 6 cut(s) 178, 499, 550, 579, 601, 679
Alw44I GTGCAC 1 cut(s) 466
AlwI GGATC 5 cut(s) 43, 88, 693, 706, 929
Aor13HI TCCGGA 2 cut(s) 391, 695
AoxI GGCC 8 cut(s) 57, 214, 434, 522, 562, 585, 629, 832
ApaLI GTGCAC 1 cut(s) 466
AsiGI ACCGGT 1 cut(s) 238
AspLEI GCGC 5 cut(s) 234, 355, 379, 605, 928
AspS9I GGNCC 4 cut(s) 210, 236, 586, 629
AsuC2I CCSGG 3 cut(s) 223, 433, 709
AsuHPI GGTGA 6 cut(s) 151, 394, 421, 520, 763, 846
AvaII GGWCC 2 cut(s) 210, 236
BaeGI GKGCMC 1 cut(s) 470
BamHI GGATCC 1 cut(s) 698
BanI GGYRCC 4 cut(s) 352, 376, 602, 645
BauI CACGAG 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 470, 657
BbvCI CCTCAGC 1 cut(s) 338
BccI CCATC 2 cut(s) 25, 533
BceAI ACGGC 5 cut(s) 568, 578, 616, 639, 847
BciT130I CCWGG 2 cut(s) 53, 820
BcnI CCSGG 3 cut(s) 223, 433, 709
BcoDI GTCTC 6 cut(s) 178, 499, 550, 579, 601, 679
BfoI RGCGCY 4 cut(s) 356, 380, 606, 929
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 815
Bme1390I CCNGG 5 cut(s) 53, 223, 433, 709, 820
Bme18I GGWCC 2 cut(s) 210, 236
BmgT120I GGNCC 4 cut(s) 210, 236, 586, 629
BmiI GGNNCC 9 cut(s) 249, 354, 378, 390, 588, 604, 630, 647, 700
BmrFI CCNGG 5 cut(s) 53, 223, 433, 709, 820
BmsI GCATC 3 cut(s) 71, 97, 979
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 841
Bpu10I CCTNAGC 1 cut(s) 338
BpuMI CCSGG 3 cut(s) 223, 433, 709
BsaHI GRCGYC 5 cut(s) 353, 377, 449, 603, 672
BsaJI CCNNGG 2 cut(s) 621, 863
BsaWI WCCGGW 5 cut(s) 207, 238, 391, 695, 982
Bsc4I CCNNNNNNNGG 8 cut(s) 228, 349, 421, 627, 708, 738, 772, 848
Bse118I RCCGGY 6 cut(s) 212, 238, 355, 379, 530, 772
Bse3DI GCAATG 2 cut(s) 724, 948
BseAI TCCGGA 2 cut(s) 391, 695
BseBI CCWGG 2 cut(s) 53, 820
BseDI CCNNGG 2 cut(s) 621, 863
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 8 cut(s) 228, 349, 421, 627, 708, 738, 772, 848
BseMI GCAATG 2 cut(s) 724, 948
BseMII CTCAG 3 cut(s) 344, 352, 590
BseRI GAGGAG 2 cut(s) 124, 292
BseSI GKGCMC 1 cut(s) 470
BsgI GTGCAG 2 cut(s) 133, 901
Bsh1236I CGCG 3 cut(s) 234, 245, 362
Bsh1285I CGRYCG 2 cut(s) 243, 360
BshFI GGCC 8 cut(s) 59, 216, 436, 524, 564, 587, 631, 834
BshNI GGYRCC 4 cut(s) 352, 376, 602, 645
BshTI ACCGGT 1 cut(s) 238
BsiEI CGRYCG 2 cut(s) 243, 360
BsiHKAI GWGCWC 2 cut(s) 470, 657
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 8 cut(s) 228, 349, 421, 627, 708, 738, 772, 848
BsmAI GTCTC 6 cut(s) 178, 499, 550, 579, 601, 679
BsmBI CGTCTC 5 cut(s) 178, 499, 550, 601, 679
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 8 cut(s) 59, 216, 436, 524, 564, 587, 631, 834
Bsp1286I GDGCHC 2 cut(s) 470, 657
Bsp13I TCCGGA 2 cut(s) 391, 695
Bsp143I GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
Bsp68I TCGCGA 1 cut(s) 362
BspANI GGCC 8 cut(s) 59, 216, 436, 524, 564, 587, 631, 834
BspCNI CTCAG 3 cut(s) 343, 351, 589
BspEI TCCGGA 2 cut(s) 391, 695
BspFNI CGCG 3 cut(s) 234, 245, 362
BspLI GGNNCC 9 cut(s) 249, 354, 378, 390, 588, 604, 630, 647, 700
BspPI GGATC 5 cut(s) 43, 88, 693, 706, 929
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 4 cut(s) 352, 376, 602, 645
BsrBI CCGCTC 2 cut(s) 616, 996
BsrDI GCAATG 2 cut(s) 724, 948
BsrFI RCCGGY 6 cut(s) 212, 238, 355, 379, 530, 772
BssAI RCCGGY 6 cut(s) 212, 238, 355, 379, 530, 772
BssECI CCNNGG 2 cut(s) 621, 863
BssMI GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
BssNI GRCGYC 5 cut(s) 353, 377, 449, 603, 672
BssSI CACGAG 1 cut(s) 650
BssT1I CCWWGG 1 cut(s) 863
Bst2BI CACGAG 1 cut(s) 650
Bst2UI CCWGG 2 cut(s) 53, 820
Bst4CI ACNGT 2 cut(s) 172, 889
Bst6I CTCTTC 2 cut(s) 71, 301
BstACI GRCGYC 5 cut(s) 353, 377, 449, 603, 672
BstC8I GCNNGC 5 cut(s) 557, 683, 774, 924, 978
BstDEI CTNAG 4 cut(s) 330, 338, 462, 576
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 1 cut(s) 937
BstFNI CGCG 3 cut(s) 234, 245, 362
BstH2I RGCGCY 4 cut(s) 356, 380, 606, 929
BstHHI GCGC 5 cut(s) 234, 355, 379, 605, 928
BstKTI GATC 9 cut(s) 51, 96, 366, 661, 701, 792, 846, 937, 951
BstMAI GTCTC 6 cut(s) 178, 499, 550, 579, 601, 679
BstMBI GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
BstMCI CGRYCG 2 cut(s) 243, 360
BstMWI GCNNNNNNNGC 8 cut(s) 78, 147, 359, 395, 404, 442, 540, 561
BstNI CCWGG 2 cut(s) 53, 820
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 5 cut(s) 51, 221, 431, 707, 818
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 3 cut(s) 234, 245, 362
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BsuRI GGCC 8 cut(s) 59, 216, 436, 524, 564, 587, 631, 834
BtgI CCRYGG 1 cut(s) 621
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 937
BtsIMutI CAGTG 1 cut(s) 894
BtuMI TCGCGA 1 cut(s) 362
Cac8I GCNNGC 5 cut(s) 557, 683, 774, 924, 978
CfoI GCGC 5 cut(s) 234, 355, 379, 605, 928
Cfr10I RCCGGY 6 cut(s) 212, 238, 355, 379, 530, 772
Cfr13I GGNCC 4 cut(s) 210, 236, 586, 629
CpoI CGGWCCG 2 cut(s) 210, 236
CseI GACGC 3 cut(s) 427, 481, 532
Csp6I GTAC 3 cut(s) 814, 829, 885
CspAI ACCGGT 1 cut(s) 238
CspI CGGWCCG 2 cut(s) 210, 236
CviAII CATG 4 cut(s) 82, 514, 571, 914
CviQI GTAC 3 cut(s) 814, 829, 885
DdeI CTNAG 4 cut(s) 330, 338, 462, 576
DinI GGCGCC 3 cut(s) 354, 378, 604
DpnI GATC 9 cut(s) 50, 95, 365, 660, 700, 791, 845, 936, 950
DpnII GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
DrdI GACNNNNNNGTC 2 cut(s) 170, 542
DseDI GACNNNNNNGTC 2 cut(s) 170, 542
EaeI YGGCCR 3 cut(s) 214, 522, 832
Eam1104I CTCTTC 2 cut(s) 71, 301
EarI CTCTTC 2 cut(s) 71, 301
EciI GGCGGA 2 cut(s) 240, 295
Eco130I CCWWGG 1 cut(s) 863
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 2 cut(s) 210, 236
EcoO109I RGGNCCY 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 51, 818
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 863
EgeI GGCGCC 3 cut(s) 354, 378, 604
EheI GGCGCC 3 cut(s) 354, 378, 604
ErhI CCWWGG 1 cut(s) 863
Esp3I CGTCTC 5 cut(s) 178, 499, 550, 601, 679
FaeI CATG 4 cut(s) 85, 517, 574, 917
FaiI YATR 7 cut(s) 83, 264, 515, 572, 636, 915, 992
FaqI GGGAC 1 cut(s) 319
FatI CATG 4 cut(s) 81, 513, 570, 913
FauI CCCGC 3 cut(s) 619, 810, 989
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 944
Fsp4HI GCNGC 1 cut(s) 60
GlaI GCGC 5 cut(s) 233, 354, 378, 604, 927
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 841
HaeII RGCGCY 4 cut(s) 356, 380, 606, 929
HaeIII GGCC 8 cut(s) 59, 216, 436, 524, 564, 587, 631, 834
HgaI GACGC 3 cut(s) 427, 481, 532
HhaI GCGC 5 cut(s) 234, 355, 379, 605, 928
Hin1I GRCGYC 5 cut(s) 353, 377, 449, 603, 672
Hin1II CATG 4 cut(s) 85, 517, 574, 917
Hin6I GCGC 5 cut(s) 232, 353, 377, 603, 926
HinP1I GCGC 5 cut(s) 232, 353, 377, 603, 926
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 580, 1019
HphI GGTGA 6 cut(s) 151, 394, 421, 520, 763, 846
Hpy166II GTNNAC 2 cut(s) 273, 468
Hpy188I TCNGA 5 cut(s) 27, 93, 579, 667, 767
Hpy188III TCNNGA 3 cut(s) 361, 392, 696
Hpy8I GTNNAC 2 cut(s) 273, 468
Hpy99I CGWCG 4 cut(s) 511, 523, 671, 674
HpyAV CCTTC 5 cut(s) 37, 328, 379, 732, 956
HpyCH4III ACNGT 2 cut(s) 172, 889
HpyCH4IV ACGT 3 cut(s) 441, 449, 672
HpyCH4V TGCA 4 cut(s) 150, 468, 681, 882
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 147, 359, 395, 404, 442, 540, 561
HpyF3I CTNAG 4 cut(s) 330, 338, 462, 576
HpySE526I ACGT 3 cut(s) 441, 449, 672
Hsp92I GRCGYC 5 cut(s) 353, 377, 449, 603, 672
Hsp92II CATG 4 cut(s) 85, 517, 574, 917
HspAI GCGC 5 cut(s) 232, 353, 377, 603, 926
KasI GGCGCC 3 cut(s) 352, 376, 602
Kpn2I TCCGGA 2 cut(s) 391, 695
KroI GCCGGC 1 cut(s) 772
KroNI GCCGGC 1 cut(s) 774
Kzo9I GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 6 cut(s) 85, 352, 394, 734, 919, 967
LweI GCATC 3 cut(s) 71, 97, 979
MaeII ACGT 3 cut(s) 441, 449, 672
MaeIII GTNAC 2 cut(s) 98, 952
MalI GATC 9 cut(s) 50, 95, 365, 660, 700, 791, 845, 936, 950
MbiI CCGCTC 2 cut(s) 616, 996
MboI GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
MboII GAAGA 5 cut(s) 40, 47, 88, 288, 766
MflI RGATCY 1 cut(s) 698
MhlI GDGCHC 2 cut(s) 470, 657
MluCI AATT 1 cut(s) 400
Mly113I GGCGCC 3 cut(s) 353, 377, 603
MlyI GAGTC 1 cut(s) 1028
MmeI TCCRAC 2 cut(s) 573, 690
MroI TCCGGA 2 cut(s) 391, 695
MroNI GCCGGC 1 cut(s) 772
MspR9I CCNGG 5 cut(s) 53, 223, 433, 709, 820
MvaI CCWGG 2 cut(s) 53, 820
MvnI CGCG 3 cut(s) 234, 245, 362
MwoI GCNNNNNNNGC 8 cut(s) 78, 147, 359, 395, 404, 442, 540, 561
NaeI GCCGGC 1 cut(s) 774
NarI GGCGCC 3 cut(s) 353, 377, 603
NciI CCSGG 3 cut(s) 223, 433, 709
NdeII GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
NgoMIV GCCGGC 1 cut(s) 772
NlaIII CATG 4 cut(s) 85, 517, 574, 917
NlaIV GGNNCC 9 cut(s) 249, 354, 378, 390, 588, 604, 630, 647, 700
NmeAIII GCCGAG 1 cut(s) 540
NruI TCGCGA 1 cut(s) 362
NspI RCATGY 1 cut(s) 917
PciI ACATGT 1 cut(s) 913
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 7 cut(s) 150, 489, 503, 515, 629, 663, 957
PdiI GCCGGC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 580
PflFI GACNNNGTC 1 cut(s) 671
PfoI TCCNGGA 2 cut(s) 51, 818
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 1027
PluTI GGCGCC 3 cut(s) 356, 380, 606
PpsI GAGTC 1 cut(s) 1027
PscI ACATGT 1 cut(s) 913
Psp6I CCWGG 2 cut(s) 51, 818
PspGI CCWGG 2 cut(s) 51, 818
PspN4I GGNNCC 9 cut(s) 249, 354, 378, 390, 588, 604, 630, 647, 700
PspPI GGNCC 4 cut(s) 210, 236, 586, 629
PsuI RGATCY 1 cut(s) 698
PsyI GACNNNGTC 1 cut(s) 671
RruI TCGCGA 1 cut(s) 362
RsaI GTAC 3 cut(s) 815, 830, 886
RsaNI GTAC 3 cut(s) 814, 829, 885
Rsr2I CGGWCCG 2 cut(s) 210, 236
RsrII CGGWCCG 2 cut(s) 210, 236
SapI GCTCTTC 1 cut(s) 71
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 9 cut(s) 48, 93, 363, 658, 698, 789, 843, 934, 948
Sau96I GGNCC 4 cut(s) 210, 236, 586, 629
ScaI AGTACT 1 cut(s) 815
SchI GAGTC 1 cut(s) 1028
ScrFI CCNGG 5 cut(s) 53, 223, 433, 709, 820
SduI GDGCHC 2 cut(s) 470, 657
SfaNI GCATC 3 cut(s) 71, 97, 979
SfoI GGCGCC 3 cut(s) 354, 378, 604
SgrAI CRCCGGYG 2 cut(s) 379, 530
SinI GGWCC 2 cut(s) 210, 236
Sse9I AATT 1 cut(s) 400
SspDI GGCGCC 3 cut(s) 352, 376, 602
StyD4I CCNGG 5 cut(s) 51, 221, 431, 707, 818
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 2 cut(s) 172, 889
TaiI ACGT 3 cut(s) 444, 452, 675
TaqI TCGA 3 cut(s) 144, 455, 483
TasI AATT 1 cut(s) 400
TatI WGTACW 2 cut(s) 813, 884
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 580
TscAI CASTG 1 cut(s) 894
TspDTI ATGAA 2 cut(s) 502, 559
TspGWI ACGGA 2 cut(s) 86, 679
TspRI CASTG 1 cut(s) 894
Tth111I GACNNNGTC 1 cut(s) 671
VneI GTGCAC 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 210, 236
XceI RCATGY 1 cut(s) 917
ZraI GACGTC 2 cut(s) 450, 673
ZrmI AGTACT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.