Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Forward (+)

48942655 .. 48943335

Gene Structure 681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTCTTCTTCCACGTCTTCTCTGGCCAGAGAATAGACCTTCCTGAATTCCCAGTCCCGGAACTCACTGATCATGTTGCAGCAGTTTCATGTCCTCCCTCGACAACTTCCCAAGATTGCGTGGTTTGTGTCATTAGCCGCAGCAGGGATGCTGAATTGGAAGCCAAGGTACTTCACCTTGGAGAAGATCAGGCTTGGATTGAATCAAAGCATTCTCGTTCCCGAGTTCACACCGATACAATCAAATGTGCTGTTTATCACACTGGAATGGGAATGTTCTGCTTTTTCGATAGAGCTGCTTCCAGTACCATGATCACCATATCTACTGAAAAGCGACCTATCGAATGGAAATGTATTGAATTCGGACCCGCAAAAACTGAGGAAAATGTCGAGCCATCAAGATCAAAATATTTTACTCTTGTCATGCATAAGTTGAAGAATAATTTTAAGGACATGAAGAAGAAGCGGGGGTTGACAGAGGATGTTTCAATTTCTACTTGTGGGACAATTACACCGTCAAAAGAATGTTGGAACAATTTTATTTATAATGAGAGCATCAGCGACAACGATGACGAATCTAAGAACCGTTGTTTCAAAGGGGTATGGATCCAACCAACATTCTCACAAAACTCCTTCAAAGATGATGAAGAGTTCGTGACTTTAATCGAGAGCGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

226

Amino Acids

25.85

Weight (kDa)

5.68

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	1 - 117	1.6e-06	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AciI	CCGC	3 cut(s)	139, 369, 466
AclWI	GGATC	2 cut(s)	601, 614
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	47, 359
AfaI	GTAC	2 cut(s)	171, 307
AfiI	CCNNNNNNNGG	2 cut(s)	58, 145
AgsI	TTSAA	6 cut(s)	203, 359, 436, 489, 595, 637
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
AlwI	GGATC	2 cut(s)	601, 614
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	80, 141, 296
ApoI	RAATTY	2 cut(s)	47, 359
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	167, 307
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	606
BarI	GAAGNNNNNNTAC	2 cut(s)	153, 185
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	92, 153, 283
BccI	CCATC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BclI	TGATCA	2 cut(s)	70, 312
BcnI	CCSGG	1 cut(s)	59
BisI	GCNGC	4 cut(s)	81, 139, 142, 297
BlsI	GCNGC	4 cut(s)	82, 140, 143, 298
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	367, 608
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	139, 564
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	165, 178
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 145
Bse1I	ACTGG	3 cut(s)	53, 268, 303
BseDI	CCNNGG	2 cut(s)	165, 178
BseGI	GGATG	2 cut(s)	154, 487
BseLI	CCNNNNNNNGG	2 cut(s)	58, 145
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	3 cut(s)	53, 268, 303
BseXI	GCAGC	3 cut(s)	92, 153, 283
BshFI	GGCC	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	41, 517
BslI	CCNNNNNNNGG	2 cut(s)	58, 145
BsmFI	GGGAC	2 cut(s)	41, 517
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	222
Bsp143I	GATC	5 cut(s)	70, 187, 312, 401, 606
BspACI	CCGC	3 cut(s)	139, 369, 466
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	367, 608
BspPI	GGATC	2 cut(s)	601, 614
BsrI	ACTGG	3 cut(s)	53, 268, 303
BssECI	CCNNGG	2 cut(s)	165, 178
BssMI	GATC	5 cut(s)	70, 187, 312, 401, 606
BssT1I	CCWWGG	2 cut(s)	165, 178
Bst4CI	ACNGT	2 cut(s)	516, 587
Bst6I	CTCTTC	1 cut(s)	642
BstDEI	CTNAG	2 cut(s)	378, 579
BstF5I	GGATG	2 cut(s)	154, 487
BstKTI	GATC	5 cut(s)	73, 190, 315, 404, 609
BstMBI	GATC	5 cut(s)	70, 187, 312, 401, 606
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	92, 153, 283
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	154, 487
BtsIMutI	CAGTG	2 cut(s)	66, 261
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	170, 306
CviAII	CATG	5 cut(s)	74, 90, 310, 424, 454
CviJI	RGCY	6 cut(s)	27, 138, 164, 194, 296, 394
CviKI_1	RGCY	6 cut(s)	27, 138, 164, 194, 296, 394
CviQI	GTAC	2 cut(s)	170, 306
DdeI	CTNAG	2 cut(s)	378, 579
DpnI	GATC	5 cut(s)	72, 189, 314, 403, 608
DpnII	GATC	5 cut(s)	70, 187, 312, 401, 606
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	165, 178
Eco47I	GGWCC	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	222
EcoRI	GAATTC	2 cut(s)	47, 359
EcoT14I	CCWWGG	2 cut(s)	165, 178
EcoT22I	ATGCAT	1 cut(s)	429
ErhI	CCWWGG	2 cut(s)	165, 178
FaeI	CATG	5 cut(s)	77, 93, 313, 427, 457
FaiI	YATR	9 cut(s)	75, 91, 311, 320, 425, 429, 455, 546, 604
FaqI	GGGAC	2 cut(s)	41, 517
FatI	CATG	5 cut(s)	73, 89, 309, 423, 453
FauI	CCCGC	2 cut(s)	376, 459
FbaI	TGATCA	2 cut(s)	70, 312
Fnu4HI	GCNGC	4 cut(s)	81, 139, 142, 297
FokI	GGATG	2 cut(s)	161, 494
Fsp4HI	GCNGC	4 cut(s)	81, 139, 142, 297
GluI	GCNGC	4 cut(s)	81, 139, 142, 297
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	5 cut(s)	77, 93, 313, 427, 457
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	2 cut(s)	203, 575
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	167, 307
Hpy166II	GTNNAC	2 cut(s)	229, 474
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	5 cut(s)	44, 222, 399, 655, 667
Hpy8I	GTNNAC	2 cut(s)	229, 474
HpyAV	CCTTC	2 cut(s)	50, 643
HpyCH4III	ACNGT	2 cut(s)	516, 587
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	80, 427
HpyF3I	CTNAG	2 cut(s)	378, 579
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	77, 93, 313, 427, 457
Ksp22I	TGATCA	2 cut(s)	70, 312
Kzo9I	GATC	5 cut(s)	70, 187, 312, 401, 606
LpnPI	CCDG	9 cut(s)	9, 41, 57, 66, 72, 130, 176, 249, 316
Lsp1109I	GCAGC	3 cut(s)	92, 153, 283
LweI	GCATC	2 cut(s)	139, 564
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	5 cut(s)	72, 189, 314, 403, 608
MboI	GATC	5 cut(s)	70, 187, 312, 401, 606
MboII	GAAGA	6 cut(s)	10, 197, 448, 469, 472, 659
MflI	RGATCY	1 cut(s)	606
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	7 cut(s)	47, 155, 359, 442, 489, 507, 535
MluNI	TGGCCA	1 cut(s)	27
MmeI	TCCRAC	2 cut(s)	509, 634
MnlI	CCTC	4 cut(s)	105, 109, 373, 472
Mox20I	TGGCCA	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	2 cut(s)	447, 662
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	5 cut(s)	70, 187, 312, 401, 606
NlaIII	CATG	5 cut(s)	77, 93, 313, 427, 457
NlaIV	GGNNCC	2 cut(s)	367, 608
NmuCI	GTSAC	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	429
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	203, 575
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	4 cut(s)	82, 140, 143, 298
PsiI	TTATAA	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	367, 608
PspPI	GGNCC	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	606
RsaI	GTAC	2 cut(s)	171, 307
RsaNI	GTAC	2 cut(s)	170, 306
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	447, 662
SatI	GCNGC	4 cut(s)	81, 139, 142, 297
Sau3AI	GATC	5 cut(s)	70, 187, 312, 401, 606
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	1 cut(s)	59
SetI	ASST	6 cut(s)	18, 42, 171, 180, 298, 340
SfaNI	GCATC	2 cut(s)	139, 564
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	7 cut(s)	47, 155, 359, 442, 489, 507, 535
SsiI	CCGC	3 cut(s)	139, 369, 466
SspI	AATATT	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	2 cut(s)	165, 178
TaaI	ACNGT	2 cut(s)	516, 587
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	5 cut(s)	101, 288, 342, 390, 666
TasI	AATT	7 cut(s)	47, 155, 359, 442, 489, 507, 535
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	203, 575
Tru1I	TTAA	2 cut(s)	447, 662
Tru9I	TTAA	2 cut(s)	447, 662
TscAI	CASTG	2 cut(s)	73, 268
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	3 cut(s)	80, 141, 296
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	3 cut(s)	78, 470, 660
TspRI	CASTG	2 cut(s)	73, 268
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	2 cut(s)	47, 359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.