Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8094374.1

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 247

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8094374.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgatgagctttccgaagatggaagaccaaaaggccatccaggaggccgcatcgcaaggcttgaagagcatggagcacctgattcgttacctctctcaccagcaacagtctaaccagccctcctctcgcgtggactgcaccgacctcacagaccacaccgtctccaagttcaaaaaggtcatttcccttctgaaccggaccggccacgcccggttcaggcgcggacccgtcgccgcggttccggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

82

Amino Acids

9.24

Weight (kDa)

9.89

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccII	CGCG	3 cut(s)	129, 222, 236
AciI	CCGC	4 cut(s)	48, 222, 234, 236
AcoI	YGGCCR	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	64, 172
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	166
AoxI	GGCC	3 cut(s)	33, 45, 202
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	198, 224
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	198, 224
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	2 cut(s)	13, 44
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	48, 234
BlsI	GCNGC	2 cut(s)	49, 235
Bme1390I	CCNGG	2 cut(s)	41, 211
Bme18I	GGWCC	2 cut(s)	198, 224
BmgT120I	GGNCC	2 cut(s)	198, 224
BmiI	GGNNCC	2 cut(s)	226, 240
BmrFI	CCNGG	2 cut(s)	41, 211
BmsI	GCATC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	3 cut(s)	129, 222, 236
BshFI	GGCC	3 cut(s)	35, 47, 204
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	4 cut(s)	196, 201, 211, 242
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	166
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	35, 47, 204
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	4 cut(s)	48, 222, 234, 236
BspANI	GGCC	3 cut(s)	35, 47, 204
BspFNI	CGCG	3 cut(s)	129, 222, 236
BspLI	GGNNCC	2 cut(s)	226, 240
BspQI	GCTCTTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	108, 160
Bst6I	CTCTTC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	3 cut(s)	129, 222, 236
BstHHI	GCGC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 135, 242
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	39, 209
BstUI	CGCG	3 cut(s)	129, 222, 236
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	35, 47, 204
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	36
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	198, 224
Cfr42I	CCGCGG	1 cut(s)	237
CpoI	CGGWCCG	1 cut(s)	198
CspI	CGGWCCG	1 cut(s)	198
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	7 cut(s)	9, 35, 47, 60, 118, 204, 245
CviKI_1	RGCY	7 cut(s)	9, 35, 47, 60, 118, 204, 245
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	198, 224
EcoRII	CCWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	48, 234
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	48, 234
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	2 cut(s)	48, 234
HaeIII	GGCC	3 cut(s)	35, 47, 204
HapII	CCGG	4 cut(s)	196, 201, 211, 242
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	4 cut(s)	196, 201, 211, 242
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	15, 192
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	108, 160
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 135, 242
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	237
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	9 cut(s)	26, 53, 92, 113, 128, 202, 209, 214, 224
LweI	GCATC	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	28, 35, 76
MhlI	GDGCHC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	37, 101, 130, 133, 155
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	4 cut(s)	196, 201, 211, 242
MspR9I	CCNGG	2 cut(s)	41, 211
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	3 cut(s)	129, 222, 236
MwoI	GCNNNNNNNGC	3 cut(s)	66, 135, 242
NciI	CCSGG	1 cut(s)	211
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	226, 240
PciSI	GCTCTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	49, 235
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	226, 240
PspPI	GGNCC	2 cut(s)	198, 224
Rsr2I	CGGWCCG	1 cut(s)	198
RsrII	CGGWCCG	1 cut(s)	198
SacII	CCGCGG	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	59
SatI	GCNGC	2 cut(s)	48, 234
Sau96I	GGNCC	2 cut(s)	198, 224
ScrFI	CCNGG	2 cut(s)	41, 211
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	5 cut(s)	11, 81, 93, 147, 180
SfaNI	GCATC	1 cut(s)	59
Sfr303I	CCGCGG	1 cut(s)	237
SgrBI	CCGCGG	1 cut(s)	237
SinI	GGWCC	2 cut(s)	198, 224
SsiI	CCGC	4 cut(s)	48, 222, 234, 236
StyD4I	CCNGG	2 cut(s)	39, 209
TaaI	ACNGT	2 cut(s)	108, 160
TauI	GCSGC	2 cut(s)	50, 236
TfiI	GAWTC	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	198, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.