RLG00000010919
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
5405814 .. 5407289
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010919

Sequence Viewer

Length: 1023 bp
ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAAAAGGCCATCCAGGAGGCCGCATCGCAAGGCTTGAAGAGCATGGAGCACCTGATTCGTTACCTGTCTCACCAGCAACAGTCTCACCAGCCCTCCTCTCGCGTGGACTGCACCGACCTCACAGACCACACCGTCTCCAAGTTCAAAAAGGTCATTTCCCTTCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCGGTCGCCGCGGTTCCGGCTCATCATCATCAGTTCTCTTCTTCTTCTTCTTCTTCTCTGCCGTCCACCTCTCTCCCCTTCCCTCCCTCCCAGACCCTGACCTTGGCTCCGGCACCCGTCGCTCCCCCGGCGATTGCTCCTCCGGCTCCGGTCAAGCCTCCGGAGACTAATTTTGCTCATTCCATGACGCTTGACTTCACCAGGCCTAATGCTCTGGCCTCAAACCCTAAGTGTACCGACATCGAGTTCAGCGTCTCGTCCAGCTCGTCGTTCATGTCGTCGGCCATCACCGGAGACAACAGCGTCTCCAACGGCAAGCTCGGTCTGTTCATTGCTCAGAATCCGCCCCCGGCCGTCTCCGGAGCCAAGCCTCCGCTCTCCGCCGCGCCGTTTAAGAAGCGGTGCCACGAGCACGACCACTCTGATGATGTCTCCTGCAAGTTATCCGGATCCGGATCCGCTTCCGGGTCGGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGGGTGAAGAAAACAATCCGAGTCCCGGCGATTAGTTCAAAGATCGCCGATATTCCGCCGGACGAGTACTCCTGGAGAAAGTACGGCCAGAAGCCGATCAAAGGCTCACCTTACCCAAGGGGTTATTACAAGTGTAGTACAGTGAGGGGGTGTCCGGCGAGAAAACACGTGGAGCGTGCGCCGGACGATCCGGCGATGCTGATCGTAACGTACGAGGGGGAGCATCGACACGCTCCGGAAAATATGAGCGGCGGAGTTGGGATGGTATTCGAGTCAACGTGA

Protein Analysis

341

Amino Acids

36.75

Weight (kDa)

9.53

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 211 - 264 1.2e-19 Plant zinc cluster domain
WRKY PF03106 268 - 324 8.1e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 539
AccB1I GGYRCC 2 cut(s) 349, 639
AccBSI CCGCTC 2 cut(s) 613, 990
AccII CGCG 4 cut(s) 141, 234, 248, 623
AccIII TCCGGA 5 cut(s) 397, 596, 683, 689, 976
AclWI GGATC 5 cut(s) 681, 687, 694, 700, 923
AcoI YGGCCR 4 cut(s) 214, 519, 588, 826
AcvI CACGTG 1 cut(s) 910
AfaI GTAC 5 cut(s) 472, 809, 824, 880, 953
AfiI CCNNNNNNNGG 6 cut(s) 228, 340, 702, 732, 766, 842
AflIII ACRYGT 1 cut(s) 907
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 76, 184, 780
AjnI CCWGG 3 cut(s) 51, 437, 812
AluBI AGCT 3 cut(s) 21, 501, 556
AluI AGCT 3 cut(s) 21, 501, 556
Alw21I GWGCWC 2 cut(s) 90, 651
Alw26I GTCTC 9 cut(s) 111, 126, 178, 395, 496, 525, 547, 598, 673
AlwI GGATC 5 cut(s) 681, 687, 694, 700, 923
AlwNI CAGNNNCTG 1 cut(s) 334
Aor13HI TCCGGA 5 cut(s) 397, 596, 683, 689, 976
AoxI GGCC 8 cut(s) 45, 57, 214, 440, 453, 519, 588, 826
AsiGI ACCGGT 1 cut(s) 238
AspLEI GCGC 3 cut(s) 234, 625, 922
AspS9I GGNCC 2 cut(s) 210, 236
AsuC2I CCSGG 5 cut(s) 223, 365, 587, 703, 767
AsuHPI GGTGA 6 cut(s) 101, 116, 427, 517, 757, 840
AvaII GGWCC 2 cut(s) 210, 236
BamHI GGATCC 2 cut(s) 686, 692
BanI GGYRCC 2 cut(s) 349, 639
BauI CACGAG 1 cut(s) 644
BbrPI CACGTG 1 cut(s) 910
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 90, 651
BccI CCATC 4 cut(s) 25, 56, 530, 997
BceAI ACGGC 5 cut(s) 283, 565, 575, 610, 841
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 3 cut(s) 53, 439, 814
BcnI CCSGG 5 cut(s) 223, 365, 587, 703, 767
BcoDI GTCTC 9 cut(s) 111, 126, 178, 395, 496, 525, 547, 598, 673
BisI GCNGC 4 cut(s) 60, 246, 621, 991
BlsI GCNGC 4 cut(s) 61, 247, 622, 992
BmcAI AGTACT 1 cut(s) 809
Bme1390I CCNGG 8 cut(s) 53, 223, 365, 439, 587, 703, 767, 814
Bme18I GGWCC 2 cut(s) 210, 236
BmgT120I GGNCC 2 cut(s) 210, 236
BmiI GGNNCC 8 cut(s) 252, 345, 351, 384, 601, 641, 688, 694
BmrFI CCNGG 8 cut(s) 53, 223, 365, 439, 587, 703, 767, 814
BmsI GCATC 3 cut(s) 71, 927, 973
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 835
BpuMI CCSGG 5 cut(s) 223, 365, 587, 703, 767
BsaAI YACGTR 1 cut(s) 910
BsaBI GATNNNNATC 2 cut(s) 691, 941
BsaJI CCNNGG 5 cut(s) 246, 339, 363, 585, 857
BsaWI WCCGGW 9 cut(s) 207, 238, 385, 397, 527, 596, 683, 689, 976
Bsc4I CCNNNNNNNGG 6 cut(s) 228, 340, 702, 732, 766, 842
Bse118I RCCGGY 2 cut(s) 212, 238
Bse3DI GCAATG 2 cut(s) 567, 718
Bse8I GATNNNNATC 2 cut(s) 691, 941
BseAI TCCGGA 5 cut(s) 397, 596, 683, 689, 976
BseBI CCWGG 3 cut(s) 53, 439, 814
BseDI CCNNGG 5 cut(s) 246, 339, 363, 585, 857
BseGI GGATG 2 cut(s) 48, 1008
BseJI GATNNNNATC 2 cut(s) 691, 941
BseLI CCNNNNNNNGG 6 cut(s) 228, 340, 702, 732, 766, 842
BseMI GCAATG 2 cut(s) 567, 718
BseMII CTCAG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 124, 366
BseX3I CGGCCG 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 4 cut(s) 141, 234, 248, 623
Bsh1285I CGRYCG 2 cut(s) 243, 591
BshFI GGCC 8 cut(s) 47, 59, 216, 442, 455, 521, 590, 828
BshNI GGYRCC 2 cut(s) 349, 639
BshTI ACCGGT 1 cut(s) 238
BsiEI CGRYCG 2 cut(s) 243, 591
BsiHKAI GWGCWC 2 cut(s) 90, 651
BsiWI CGTACG 1 cut(s) 951
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 6 cut(s) 228, 340, 702, 732, 766, 842
BsmAI GTCTC 9 cut(s) 111, 126, 178, 395, 496, 525, 547, 598, 673
BsmBI CGTCTC 4 cut(s) 178, 496, 547, 598
BsmFI GGGAC 1 cut(s) 749
BsnI GGCC 8 cut(s) 47, 59, 216, 442, 455, 521, 590, 828
Bsp1286I GDGCHC 2 cut(s) 90, 651
Bsp13I TCCGGA 5 cut(s) 397, 596, 683, 689, 976
Bsp143I GATC 6 cut(s) 686, 692, 783, 837, 928, 942
BspANI GGCC 8 cut(s) 47, 59, 216, 442, 455, 521, 590, 828
BspCNI CTCAG 1 cut(s) 586
BspEI TCCGGA 5 cut(s) 397, 596, 683, 689, 976
BspFNI CGCG 4 cut(s) 141, 234, 248, 623
BspLI GGNNCC 8 cut(s) 252, 345, 351, 384, 601, 641, 688, 694
BspPI GGATC 5 cut(s) 681, 687, 694, 700, 923
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 2 cut(s) 349, 639
BsrBI CCGCTC 2 cut(s) 613, 990
BsrDI GCAATG 2 cut(s) 567, 718
BsrFI RCCGGY 2 cut(s) 212, 238
BssAI RCCGGY 2 cut(s) 212, 238
BssECI CCNNGG 5 cut(s) 246, 339, 363, 585, 857
BssMI GATC 6 cut(s) 686, 692, 783, 837, 928, 942
BssSI CACGAG 1 cut(s) 644
BssT1I CCWWGG 2 cut(s) 339, 857
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 3 cut(s) 53, 439, 814
Bst4CI ACNGT 3 cut(s) 120, 172, 883
Bst6I CTCTTC 2 cut(s) 71, 280
BstBAI YACGTR 1 cut(s) 910
BstC8I GCNNGC 2 cut(s) 554, 918
BstDEI CTNAG 2 cut(s) 465, 573
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 48, 1008
BstFNI CGCG 4 cut(s) 141, 234, 248, 623
BstHHI GCGC 3 cut(s) 234, 625, 922
BstKTI GATC 6 cut(s) 689, 695, 786, 840, 931, 945
BstMAI GTCTC 9 cut(s) 111, 126, 178, 395, 496, 525, 547, 598, 673
BstMBI GATC 6 cut(s) 686, 692, 783, 837, 928, 942
BstMCI CGRYCG 2 cut(s) 243, 591
BstMWI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 356, 365, 380
BstNI CCWGG 3 cut(s) 53, 439, 814
BstSCI CCNGG 8 cut(s) 51, 221, 363, 437, 585, 701, 765, 812
BstUI CGCG 4 cut(s) 141, 234, 248, 623
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 686, 692
BstYI RGATCY 2 cut(s) 686, 692
BstZI CGGCCG 1 cut(s) 588
BsuRI GGCC 8 cut(s) 47, 59, 216, 442, 455, 521, 590, 828
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 2 cut(s) 48, 950
BtsCI GGATG 2 cut(s) 48, 1008
BtsIMutI CAGTG 1 cut(s) 888
Cac8I GCNNGC 2 cut(s) 554, 918
CaiI CAGNNNCTG 1 cut(s) 334
CfoI GCGC 3 cut(s) 234, 625, 922
Cfr10I RCCGGY 2 cut(s) 212, 238
Cfr13I GGNCC 2 cut(s) 210, 236
Cfr42I CCGCGG 1 cut(s) 249
CpoI CGGWCCG 2 cut(s) 210, 236
CseI GACGC 3 cut(s) 433, 478, 529
Csp6I GTAC 5 cut(s) 471, 808, 823, 879, 952
CspAI ACCGGT 1 cut(s) 238
CspI CGGWCCG 2 cut(s) 210, 236
CviAII CATG 3 cut(s) 82, 421, 511
CviQI GTAC 5 cut(s) 471, 808, 823, 879, 952
DdeI CTNAG 2 cut(s) 465, 573
DpnI GATC 6 cut(s) 688, 694, 785, 839, 930, 944
DpnII GATC 6 cut(s) 686, 692, 783, 837, 928, 942
DrdI GACNNNNNNGTC 2 cut(s) 170, 539
DseDI GACNNNNNNGTC 2 cut(s) 170, 539
EaeI YGGCCR 4 cut(s) 214, 519, 588, 826
EagI CGGCCG 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 71, 280
EarI CTCTTC 2 cut(s) 71, 280
EciI GGCGGA 4 cut(s) 570, 607, 786, 1008
EclXI CGGCCG 1 cut(s) 588
Eco130I CCWWGG 2 cut(s) 339, 857
Eco147I AGGCCT 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 210, 236
Eco52I CGGCCG 1 cut(s) 588
Eco72I CACGTG 1 cut(s) 910
EcoRII CCWGG 3 cut(s) 51, 437, 812
EcoT14I CCWWGG 2 cut(s) 339, 857
ErhI CCWWGG 2 cut(s) 339, 857
Esp3I CGTCTC 4 cut(s) 178, 496, 547, 598
FaeI CATG 3 cut(s) 85, 424, 514
FaiI YATR 4 cut(s) 83, 422, 512, 986
FaqI GGGAC 1 cut(s) 749
FatI CATG 3 cut(s) 81, 420, 510
Fnu4HI GCNGC 4 cut(s) 60, 246, 621, 991
FokI GGATG 2 cut(s) 35, 1015
Fsp4HI GCNGC 4 cut(s) 60, 246, 621, 991
GlaI GCGC 3 cut(s) 233, 624, 921
GluI GCNGC 4 cut(s) 60, 246, 621, 991
GsuI CTGGAG 1 cut(s) 835
HaeIII GGCC 8 cut(s) 47, 59, 216, 442, 455, 521, 590, 828
HgaI GACGC 3 cut(s) 433, 478, 529
HhaI GCGC 3 cut(s) 234, 625, 922
Hin1II CATG 3 cut(s) 85, 424, 514
Hin6I GCGC 3 cut(s) 232, 623, 920
HinP1I GCGC 3 cut(s) 232, 623, 920
HincII GTYRAC 1 cut(s) 1017
HindII GTYRAC 1 cut(s) 1017
HinfI GANTC 4 cut(s) 94, 577, 762, 1013
HphI GGTGA 6 cut(s) 101, 116, 427, 517, 757, 840
Hpy166II GTNNAC 4 cut(s) 145, 303, 471, 1017
Hpy188I TCNGA 5 cut(s) 27, 204, 576, 661, 761
Hpy188III TCNNGA 5 cut(s) 398, 597, 684, 690, 977
Hpy8I GTNNAC 4 cut(s) 145, 303, 471, 1017
Hpy99I CGWCG 3 cut(s) 359, 508, 520
HpyAV CCTTC 3 cut(s) 209, 325, 726
HpyCH4III ACNGT 3 cut(s) 120, 172, 883
HpyCH4IV ACGT 3 cut(s) 909, 950, 1019
HpyCH4V TGCA 2 cut(s) 150, 675
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 356, 365, 380
HpyF3I CTNAG 2 cut(s) 465, 573
HpySE526I ACGT 3 cut(s) 909, 950, 1019
Hsp92II CATG 3 cut(s) 85, 424, 514
HspAI GCGC 3 cut(s) 232, 623, 920
Kpn2I TCCGGA 5 cut(s) 397, 596, 683, 689, 976
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 6 cut(s) 686, 692, 783, 837, 928, 942
LguI GCTCTTC 1 cut(s) 71
LweI GCATC 3 cut(s) 71, 927, 973
MaeII ACGT 3 cut(s) 909, 950, 1019
MaeIII GTNAC 2 cut(s) 98, 946
MalI GATC 6 cut(s) 688, 694, 785, 839, 930, 944
MbiI CCGCTC 2 cut(s) 613, 990
MboI GATC 6 cut(s) 686, 692, 783, 837, 928, 942
MflI RGATCY 2 cut(s) 686, 692
MhlI GDGCHC 2 cut(s) 90, 651
MluCI AATT 1 cut(s) 406
MlyI GAGTC 2 cut(s) 771, 1022
MmeI TCCRAC 1 cut(s) 570
MroI TCCGGA 5 cut(s) 397, 596, 683, 689, 976
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 8 cut(s) 53, 223, 365, 439, 587, 703, 767, 814
MvaI CCWGG 3 cut(s) 53, 439, 814
MvnI CGCG 4 cut(s) 141, 234, 248, 623
MwoI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 356, 365, 380
NciI CCSGG 5 cut(s) 223, 365, 587, 703, 767
NdeII GATC 6 cut(s) 686, 692, 783, 837, 928, 942
NlaIII CATG 3 cut(s) 85, 424, 514
NlaIV GGNNCC 8 cut(s) 252, 345, 351, 384, 601, 641, 688, 694
PceI AGGCCT 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 4 cut(s) 486, 500, 512, 951
PfeI GAWTC 2 cut(s) 94, 577
Pfl23II CGTACG 1 cut(s) 951
PfoI TCCNGGA 2 cut(s) 51, 812
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 4 cut(s) 61, 247, 622, 992
PleI GAGTC 2 cut(s) 770, 1021
PmaCI CACGTG 1 cut(s) 910
PmlI CACGTG 1 cut(s) 910
PpsI GAGTC 2 cut(s) 770, 1021
Ppu21I YACGTR 1 cut(s) 910
Psp6I CCWGG 3 cut(s) 51, 437, 812
PspCI CACGTG 1 cut(s) 910
PspGI CCWGG 3 cut(s) 51, 437, 812
PspLI CGTACG 1 cut(s) 951
PspN4I GGNNCC 8 cut(s) 252, 345, 351, 384, 601, 641, 688, 694
PspPI GGNCC 2 cut(s) 210, 236
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 2 cut(s) 686, 692
RsaI GTAC 5 cut(s) 472, 809, 824, 880, 953
RsaNI GTAC 5 cut(s) 471, 808, 823, 879, 952
RseI CAYNNNNRTG 1 cut(s) 660
Rsr2I CGGWCCG 2 cut(s) 210, 236
RsrII CGGWCCG 2 cut(s) 210, 236
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 4 cut(s) 60, 246, 621, 991
Sau3AI GATC 6 cut(s) 686, 692, 783, 837, 928, 942
Sau96I GGNCC 2 cut(s) 210, 236
ScaI AGTACT 1 cut(s) 809
SchI GAGTC 2 cut(s) 771, 1022
ScrFI CCNGG 8 cut(s) 53, 223, 365, 439, 587, 703, 767, 814
SduI GDGCHC 2 cut(s) 90, 651
SfaNI GCATC 3 cut(s) 71, 927, 973
Sfr303I CCGCGG 1 cut(s) 249
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 210, 236
SmiMI CAYNNNNRTG 1 cut(s) 660
Sse9I AATT 1 cut(s) 406
SseBI AGGCCT 1 cut(s) 442
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 8 cut(s) 51, 221, 363, 437, 585, 701, 765, 812
StyI CCWWGG 2 cut(s) 339, 857
TaaI ACNGT 3 cut(s) 120, 172, 883
TaiI ACGT 3 cut(s) 912, 953, 1022
TaqI TCGA 3 cut(s) 480, 967, 1011
TaqII GACCGA 1 cut(s) 548
TasI AATT 1 cut(s) 406
TatI WGTACW 2 cut(s) 807, 878
TauI GCSGC 4 cut(s) 62, 248, 623, 993
TfiI GAWTC 2 cut(s) 94, 577
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 888
TspDTI ATGAA 2 cut(s) 499, 556
TspRI CASTG 1 cut(s) 888
VpaK11BI GGWCC 2 cut(s) 210, 236
ZrmI AGTACT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.