MD08G1127200.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
11928202 .. 11930014
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1127200.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGACGGTGGAGCTGATGGAATTCCCGAAGATGGAGGATCAGAAGGCCATCCAGGAAGCCGCATCGCAAGGATTGCAGAGCATGGAGCACCTGATCCGGTTCCTCTCCCACCAGCAGCAACACCCAAACAACCAATCGGCCCGCCTGGACTGTACGGACATCACCGATCACACCGTCTCCAAGTTCAAAAAGGTCATCTCCCTCCTCAATCGGACGGGCCATGCCCGGTTCCGACGCGGTCCGGCTCAACCGGTTCAGCCCGTCCACTTCTCTTCTTCTCATCCCTCACCTTCACAAACACTGAGCTTAGCTCCGGCTCTAAATCTTACTCCGACTCCCGCGCCGGTTCCGGTAACTGCTCCTGCGGTTGTTCAGCAGGCTACGATCGAGTCGAGTTTCGGCCAATCGCAGCCGCACAGCATGACGCTCGACTTCACGAGGCCTAATGCCTTCGCCTCGAACCCGAAGAGCGCGGAGATTGAATTCGCAAAGGATAACTTCAGCGTCTCGTCAGGCTCGTCGTTCATGTCGTCGGCGATCACCGGAGATGGCAGCGTTTCGAACGGGAAGCTGGGATCGTCGATCTTCTTGGCTCCCGCTCCGGCTGTGTCCGGCGCGAAGCCTCCTCTCTCAACGGCGCCGTTTAAGAAGAGTTGTCACGAGCACGACCACTCCGACGACACGTCGTGCAAGTTTTCCGCCTCAGGATCTGCTTCCGGTTCCGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGGGTGAAGAAAACGATTCGCGTGCCGGCGATTAGTTCAAAAATCGCCGATATTCCACCGGACGAGTACTCCTGGAGAAAGTACGGTCAGAAGCCGATCAAGGGCTCGCCTTACCCAAGGGGATATTACAAGTGCAGTACGGTGAGGGGGTGCCCGGCGAGGAAACACGTGGAGCGGGCTCCGGATGATCCGGCGATGCTGATCGTAACGTACGAAGGGGAGCACCGTCACGCGCCGGAGAGCGTGGGGTTGGTGTACGAGTCAACGTGA

Protein Analysis

342

Amino Acids

36.96

Weight (kDa)

9.32

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 216 - 269 1.2e-18 Plant zinc cluster domain
WRKY PF03106 273 - 329 8.1e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 637, 906
AccBSI CCGCTC 2 cut(s) 599, 931
AccII CGCG 6 cut(s) 237, 341, 473, 617, 777, 989
AccIII TCCGGA 1 cut(s) 937
AclWI GGATC 5 cut(s) 45, 88, 583, 715, 938
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 2 cut(s) 20, 482
AcuI CTGAAG 1 cut(s) 484
AcvI CACGTG 1 cut(s) 925
AcyI GRCGYC 1 cut(s) 638
AdeI CACNNNGTG 1 cut(s) 687
AfaI GTAC 6 cut(s) 154, 824, 839, 895, 968, 1013
AfiI CCNNNNNNNGG 3 cut(s) 31, 747, 857
AflIII ACRYGT 2 cut(s) 681, 922
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 3 cut(s) 187, 482, 795
AhdI GACNNNNNGTC 1 cut(s) 682
AjiI CACGTC 1 cut(s) 684
AjnI CCWGG 3 cut(s) 51, 144, 827
AluBI AGCT 4 cut(s) 13, 306, 311, 571
AluI AGCT 4 cut(s) 13, 306, 311, 571
Alw21I GWGCWC 3 cut(s) 90, 666, 981
Alw26I GTCTC 2 cut(s) 181, 511
AlwI GGATC 5 cut(s) 45, 88, 583, 715, 938
AlwNI CAGNNNCTG 1 cut(s) 710
Aor13HI TCCGGA 1 cut(s) 937
AoxI GGCC 5 cut(s) 45, 138, 217, 400, 440
ApeKI GCWGC 3 cut(s) 115, 409, 552
ApoI RAATTY 2 cut(s) 20, 482
AsiGI ACCGGT 1 cut(s) 250
AspLEI GCGC 5 cut(s) 343, 473, 617, 640, 991
AspS9I GGNCC 3 cut(s) 139, 217, 239
AsuC2I CCSGG 2 cut(s) 226, 911
AsuHPI GGTGA 5 cut(s) 154, 279, 532, 772, 910
AsuII TTCGAA 1 cut(s) 560
AvaII GGWCC 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 703
BaeGI GKGCMC 1 cut(s) 911
BanI GGYRCC 2 cut(s) 637, 906
BanII GRGCYC 2 cut(s) 863, 937
BauI CACGAG 2 cut(s) 436, 659
BbrPI CACGTG 1 cut(s) 925
Bbv12I GWGCWC 3 cut(s) 90, 666, 981
BbvI GCAGC 3 cut(s) 127, 421, 564
BccI CCATC 4 cut(s) 10, 25, 56, 542
BceAI ACGGC 2 cut(s) 625, 651
BcgI CGANNNNNNTGC 4 cut(s) 409, 443, 760, 794
BciT130I CCWGG 3 cut(s) 53, 146, 829
BcnI CCSGG 2 cut(s) 226, 911
BcoDI GTCTC 2 cut(s) 181, 511
BfoI RGCGCY 1 cut(s) 641
BisI GCNGC 5 cut(s) 60, 116, 410, 413, 553
BlpI GCTNAGC 1 cut(s) 307
BlsI GCNGC 5 cut(s) 61, 117, 411, 414, 554
BmcAI AGTACT 1 cut(s) 824
Bme1390I CCNGG 5 cut(s) 53, 146, 226, 829, 911
Bme18I GGWCC 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 682
BmgBI CACGTC 1 cut(s) 684
BmgT120I GGNCC 3 cut(s) 139, 217, 239
BmiI GGNNCC 8 cut(s) 101, 230, 348, 594, 639, 721, 908, 936
BmrFI CCNGG 5 cut(s) 53, 146, 226, 829, 911
BmsI GCATC 2 cut(s) 71, 942
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 850
Bpu1102I GCTNAGC 1 cut(s) 307
Bpu14I TTCGAA 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 226, 911
BsaAI YACGTR 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 956
BsaHI GRCGYC 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 872
BsaWI WCCGGW 7 cut(s) 96, 250, 349, 542, 716, 814, 937
BsaXI ACNNNNNCTCC 8 cut(s) 161, 191, 319, 349, 656, 686, 809, 839
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 747, 857
Bse118I RCCGGY 3 cut(s) 250, 343, 781
Bse21I CCTNAGG 1 cut(s) 703
Bse3DI GCAATG 1 cut(s) 733
Bse8I GATNNNNATC 1 cut(s) 956
BseAI TCCGGA 1 cut(s) 937
BseBI CCWGG 3 cut(s) 53, 146, 829
BseDI CCNNGG 1 cut(s) 872
BseGI GGATG 3 cut(s) 48, 280, 946
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 3 cut(s) 31, 747, 857
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 2 cut(s) 293, 717
BseRI GAGGAG 2 cut(s) 194, 615
BseSI GKGCMC 1 cut(s) 911
BseXI GCAGC 3 cut(s) 127, 421, 564
BseYI CCCAGC 1 cut(s) 571
BsgI GTGCAG 1 cut(s) 910
Bsh1236I CGCG 6 cut(s) 237, 341, 473, 617, 777, 989
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 5 cut(s) 47, 140, 219, 402, 442
BshNI GGYRCC 2 cut(s) 637, 906
BshTI ACCGGT 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 3 cut(s) 90, 666, 981
BsiWI CGTACG 1 cut(s) 966
BslI CCNNNNNNNGG 3 cut(s) 31, 747, 857
BsmAI GTCTC 2 cut(s) 181, 511
BsmBI CGTCTC 2 cut(s) 181, 511
BsnI GGCC 5 cut(s) 47, 140, 219, 402, 442
Bsp119I TTCGAA 1 cut(s) 560
Bsp1286I GDGCHC 6 cut(s) 90, 666, 863, 911, 937, 981
Bsp13I TCCGGA 1 cut(s) 937
Bsp1720I GCTNAGC 1 cut(s) 307
BspANI GGCC 5 cut(s) 47, 140, 219, 402, 442
BspCNI CTCAG 2 cut(s) 294, 716
BspEI TCCGGA 1 cut(s) 937
BspFNI CGCG 6 cut(s) 237, 341, 473, 617, 777, 989
BspLI GGNNCC 8 cut(s) 101, 230, 348, 594, 639, 721, 908, 936
BspPI GGATC 5 cut(s) 45, 88, 583, 715, 938
BspQI GCTCTTC 1 cut(s) 461
BspT104I TTCGAA 1 cut(s) 560
BspT107I GGYRCC 2 cut(s) 637, 906
BsrBI CCGCTC 2 cut(s) 599, 931
BsrDI GCAATG 1 cut(s) 733
BsrFI RCCGGY 3 cut(s) 250, 343, 781
BssAI RCCGGY 3 cut(s) 250, 343, 781
BssECI CCNNGG 1 cut(s) 872
BssNI GRCGYC 1 cut(s) 638
BssSI CACGAG 2 cut(s) 436, 659
BssT1I CCWWGG 1 cut(s) 872
Bst2BI CACGAG 2 cut(s) 436, 659
Bst2UI CCWGG 3 cut(s) 53, 146, 829
Bst4CI ACNGT 6 cut(s) 7, 152, 175, 842, 898, 983
Bst6I CTCTTC 3 cut(s) 277, 461, 644
BstACI GRCGYC 1 cut(s) 638
BstAPI GCANNNNNTGC 1 cut(s) 73
BstBAI YACGTR 1 cut(s) 925
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 6 cut(s) 142, 378, 779, 783, 863, 933
BstDEI CTNAG 3 cut(s) 302, 307, 703
BstF5I GGATG 3 cut(s) 48, 280, 946
BstFNI CGCG 6 cut(s) 237, 341, 473, 617, 777, 989
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 5 cut(s) 343, 473, 617, 640, 991
BstMAI GTCTC 2 cut(s) 181, 511
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 3 cut(s) 53, 146, 829
BstSCI CCNGG 5 cut(s) 51, 144, 224, 827, 909
BstSLI GKGCMC 1 cut(s) 911
BstUI CGCG 6 cut(s) 237, 341, 473, 617, 777, 989
BstV1I GCAGC 3 cut(s) 127, 421, 564
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
Bsu36I CCTNAGG 1 cut(s) 703
BsuRI GGCC 5 cut(s) 47, 140, 219, 402, 442
BtgZI GCGATG 2 cut(s) 48, 965
BtrI CACGTC 1 cut(s) 684
BtsCI GGATG 3 cut(s) 48, 280, 946
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 6 cut(s) 142, 378, 779, 783, 863, 933
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 5 cut(s) 343, 473, 617, 640, 991
Cfr10I RCCGGY 3 cut(s) 250, 343, 781
Cfr13I GGNCC 3 cut(s) 139, 217, 239
CpoI CGGWCCG 1 cut(s) 239
CseI GACGC 3 cut(s) 243, 433, 493
Csp6I GTAC 6 cut(s) 153, 823, 838, 894, 967, 1012
CspAI ACCGGT 1 cut(s) 250
CspI CGGWCCG 1 cut(s) 239
CviAII CATG 4 cut(s) 82, 221, 421, 526
CviQI GTAC 6 cut(s) 153, 823, 838, 894, 967, 1012
DdeI CTNAG 3 cut(s) 302, 307, 703
DinI GGCGCC 1 cut(s) 639
DraIII CACNNNGTG 1 cut(s) 687
DriI GACNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 400
Eam1104I CTCTTC 3 cut(s) 277, 461, 644
Eam1105I GACNNNNNGTC 1 cut(s) 682
EarI CTCTTC 3 cut(s) 277, 461, 644
EciI GGCGGA 1 cut(s) 688
Eco130I CCWWGG 1 cut(s) 872
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 2 cut(s) 863, 937
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 484
Eco72I CACGTG 1 cut(s) 925
Eco81I CCTNAGG 1 cut(s) 703
EcoRI GAATTC 2 cut(s) 20, 482
EcoRII CCWGG 3 cut(s) 51, 144, 827
EcoT14I CCWWGG 1 cut(s) 872
EcoT38I GRGCYC 2 cut(s) 863, 937
EgeI GGCGCC 1 cut(s) 639
EheI GGCGCC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 872
Esp3I CGTCTC 2 cut(s) 181, 511
FaeI CATG 4 cut(s) 85, 224, 424, 529
FaiI YATR 4 cut(s) 83, 222, 422, 527
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 4 cut(s) 81, 220, 420, 525
FauI CCCGC 4 cut(s) 149, 346, 604, 924
Fnu4HI GCNGC 5 cut(s) 60, 116, 410, 413, 553
FokI GGATG 3 cut(s) 35, 267, 953
FriOI GRGCYC 2 cut(s) 863, 937
Fsp4HI GCNGC 5 cut(s) 60, 116, 410, 413, 553
GlaI GCGC 5 cut(s) 342, 472, 616, 639, 990
GluI GCNGC 5 cut(s) 60, 116, 410, 413, 553
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 1 cut(s) 850
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 5 cut(s) 47, 140, 219, 402, 442
HgaI GACGC 3 cut(s) 243, 433, 493
HhaI GCGC 5 cut(s) 343, 473, 617, 640, 991
Hin1I GRCGYC 1 cut(s) 638
Hin1II CATG 4 cut(s) 85, 224, 424, 529
Hin6I GCGC 5 cut(s) 341, 471, 615, 638, 989
HinP1I GCGC 5 cut(s) 341, 471, 615, 638, 989
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HinfI GANTC 4 cut(s) 334, 389, 772, 1016
HphI GGTGA 5 cut(s) 154, 279, 532, 772, 910
Hpy166II GTNNAC 3 cut(s) 265, 1012, 1020
Hpy188I TCNGA 6 cut(s) 42, 213, 233, 333, 676, 846
Hpy188III TCNNGA 5 cut(s) 25, 436, 659, 705, 938
Hpy8I GTNNAC 3 cut(s) 265, 1012, 1020
Hpy99I CGWCG 6 cut(s) 237, 523, 535, 583, 680, 688
HpyAV CCTTC 5 cut(s) 37, 300, 460, 741, 965
HpyCH4III ACNGT 6 cut(s) 7, 152, 175, 842, 898, 983
HpyCH4IV ACGT 4 cut(s) 683, 924, 965, 1022
HpyCH4V TGCA 3 cut(s) 76, 690, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 3 cut(s) 302, 307, 703
HpySE526I ACGT 4 cut(s) 683, 924, 965, 1022
Hsp92I GRCGYC 1 cut(s) 638
Hsp92II CATG 4 cut(s) 85, 224, 424, 529
HspAI GCGC 5 cut(s) 341, 471, 615, 638, 989
KasI GGCGCC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 937
KroI GCCGGC 1 cut(s) 781
KroNI GCCGGC 1 cut(s) 783
LguI GCTCTTC 1 cut(s) 461
Lsp1109I GCAGC 3 cut(s) 127, 421, 564
LweI GCATC 2 cut(s) 71, 942
MaeII ACGT 4 cut(s) 683, 924, 965, 1022
MaeIII GTNAC 4 cut(s) 352, 656, 961, 983
MbiI CCGCTC 2 cut(s) 599, 931
MboII GAAGA 7 cut(s) 40, 264, 267, 478, 577, 661, 775
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 6 cut(s) 90, 666, 863, 911, 937, 981
MluCI AATT 2 cut(s) 20, 482
Mly113I GGCGCC 1 cut(s) 638
MlyI GAGTC 3 cut(s) 328, 398, 1025
MmeI TCCRAC 3 cut(s) 256, 356, 699
MroI TCCGGA 1 cut(s) 937
MroNI GCCGGC 1 cut(s) 781
MseI TTAA 1 cut(s) 645
MspR9I CCNGG 5 cut(s) 53, 146, 226, 829, 911
MvaI CCWGG 3 cut(s) 53, 146, 829
MvnI CGCG 6 cut(s) 237, 341, 473, 617, 777, 989
MwoI GCNNNNNNNGC 1 cut(s) 73
NaeI GCCGGC 1 cut(s) 783
NarI GGCGCC 1 cut(s) 638
NciI CCSGG 2 cut(s) 226, 911
NgoMIV GCCGGC 1 cut(s) 781
NlaIII CATG 4 cut(s) 85, 224, 424, 529
NlaIV GGNNCC 8 cut(s) 101, 230, 348, 594, 639, 721, 908, 936
NmuCI GTSAC 2 cut(s) 656, 983
NspV TTCGAA 1 cut(s) 560
PceI AGGCCT 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 5 cut(s) 389, 515, 527, 672, 966
PdiI GCCGGC 1 cut(s) 783
PfeI GAWTC 1 cut(s) 772
Pfl23II CGTACG 1 cut(s) 966
PflFI GACNNNGTC 1 cut(s) 237
PfoI TCCNGGA 2 cut(s) 51, 827
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 5 cut(s) 61, 117, 411, 414, 554
Ple19I CGATCG 1 cut(s) 387
PleI GAGTC 3 cut(s) 328, 397, 1024
PluTI GGCGCC 1 cut(s) 641
PmaCI CACGTG 1 cut(s) 925
PmlI CACGTG 1 cut(s) 925
PpsI GAGTC 3 cut(s) 328, 397, 1024
Ppu21I YACGTR 1 cut(s) 925
Psp6I CCWGG 3 cut(s) 51, 144, 827
PspCI CACGTG 1 cut(s) 925
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 3 cut(s) 51, 144, 827
PspLI CGTACG 1 cut(s) 966
PspN4I GGNNCC 8 cut(s) 101, 230, 348, 594, 639, 721, 908, 936
PspPI GGNCC 3 cut(s) 139, 217, 239
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 237
PvuI CGATCG 1 cut(s) 387
RsaI GTAC 6 cut(s) 154, 824, 839, 895, 968, 1013
RsaNI GTAC 6 cut(s) 153, 823, 838, 894, 967, 1012
Rsr2I CGGWCCG 1 cut(s) 239
RsrII CGGWCCG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 5 cut(s) 60, 116, 410, 413, 553
Sau96I GGNCC 3 cut(s) 139, 217, 239
ScaI AGTACT 1 cut(s) 824
SchI GAGTC 3 cut(s) 328, 398, 1025
ScrFI CCNGG 5 cut(s) 53, 146, 226, 829, 911
SduI GDGCHC 6 cut(s) 90, 666, 863, 911, 937, 981
SfaNI GCATC 2 cut(s) 71, 942
SfoI GGCGCC 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 560
SinI GGWCC 1 cut(s) 239
Sse9I AATT 2 cut(s) 20, 482
SseBI AGGCCT 1 cut(s) 442
SspDI GGCGCC 1 cut(s) 637
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 5 cut(s) 51, 144, 224, 827, 909
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 6 cut(s) 7, 152, 175, 842, 898, 983
TaiI ACGT 4 cut(s) 686, 927, 968, 1025
TaqI TCGA 6 cut(s) 387, 392, 429, 458, 560, 581
TasI AATT 2 cut(s) 20, 482
TatI WGTACW 1 cut(s) 822
TauI GCSGC 2 cut(s) 62, 415
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 2 cut(s) 656, 983
TseI GCWGC 3 cut(s) 115, 409, 552
Tsp45I GTSAC 2 cut(s) 656, 983
TspDTI ATGAA 1 cut(s) 514
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 306
Tth111I GACNNNGTC 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 2 cut(s) 20, 482
ZrmI AGTACT 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.