WRKY transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24570 AT4G31550 AT4G31550 AT4G31550 |
| fragaria_vesca | FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830 |
| malus_domestica | MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1 |
| prunus_persica | Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1 |
| pyrus_communis | pycom13g21150 pycom15g09730 pycom16g20580 |
| rosa_chinensis | RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101 |
| rosa_laevigata | RLG00000009325 RLG00000010919 |
| rosa_multiflora | Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00343690 Rroxscaffold_7G00163150 |
| rosa_rugosa | Rorug04G0011200 Rorug06G0337300 |
| rosa_samantha | Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500 |
| rosa_wichuraiana | Rw4G007360 Rw6G039120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 637, 906 |
| AccBSI | CCGCTC | 2 cut(s) | 599, 931 |
| AccII | CGCG | 6 cut(s) | 237, 341, 473, 617, 777, 989 |
| AccIII | TCCGGA | 1 cut(s) | 937 |
| AclWI | GGATC | 5 cut(s) | 45, 88, 583, 715, 938 |
| AcoI | YGGCCR | 1 cut(s) | 400 |
| AcsI | RAATTY | 2 cut(s) | 20, 482 |
| AcuI | CTGAAG | 1 cut(s) | 484 |
| AcvI | CACGTG | 1 cut(s) | 925 |
| AcyI | GRCGYC | 1 cut(s) | 638 |
| AdeI | CACNNNGTG | 1 cut(s) | 687 |
| AfaI | GTAC | 6 cut(s) | 154, 824, 839, 895, 968, 1013 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 31, 747, 857 |
| AflIII | ACRYGT | 2 cut(s) | 681, 922 |
| AgeI | ACCGGT | 1 cut(s) | 250 |
| AgsI | TTSAA | 3 cut(s) | 187, 482, 795 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 682 |
| AjiI | CACGTC | 1 cut(s) | 684 |
| AjnI | CCWGG | 3 cut(s) | 51, 144, 827 |
| AluBI | AGCT | 4 cut(s) | 13, 306, 311, 571 |
| AluI | AGCT | 4 cut(s) | 13, 306, 311, 571 |
| Alw21I | GWGCWC | 3 cut(s) | 90, 666, 981 |
| Alw26I | GTCTC | 2 cut(s) | 181, 511 |
| AlwI | GGATC | 5 cut(s) | 45, 88, 583, 715, 938 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 710 |
| Aor13HI | TCCGGA | 1 cut(s) | 937 |
| AoxI | GGCC | 5 cut(s) | 45, 138, 217, 400, 440 |
| ApeKI | GCWGC | 3 cut(s) | 115, 409, 552 |
| ApoI | RAATTY | 2 cut(s) | 20, 482 |
| AsiGI | ACCGGT | 1 cut(s) | 250 |
| AspLEI | GCGC | 5 cut(s) | 343, 473, 617, 640, 991 |
| AspS9I | GGNCC | 3 cut(s) | 139, 217, 239 |
| AsuC2I | CCSGG | 2 cut(s) | 226, 911 |
| AsuHPI | GGTGA | 5 cut(s) | 154, 279, 532, 772, 910 |
| AsuII | TTCGAA | 1 cut(s) | 560 |
| AvaII | GGWCC | 1 cut(s) | 239 |
| AxyI | CCTNAGG | 1 cut(s) | 703 |
| BaeGI | GKGCMC | 1 cut(s) | 911 |
| BanI | GGYRCC | 2 cut(s) | 637, 906 |
| BanII | GRGCYC | 2 cut(s) | 863, 937 |
| BauI | CACGAG | 2 cut(s) | 436, 659 |
| BbrPI | CACGTG | 1 cut(s) | 925 |
| Bbv12I | GWGCWC | 3 cut(s) | 90, 666, 981 |
| BbvI | GCAGC | 3 cut(s) | 127, 421, 564 |
| BccI | CCATC | 4 cut(s) | 10, 25, 56, 542 |
| BceAI | ACGGC | 2 cut(s) | 625, 651 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 409, 443, 760, 794 |
| BciT130I | CCWGG | 3 cut(s) | 53, 146, 829 |
| BcnI | CCSGG | 2 cut(s) | 226, 911 |
| BcoDI | GTCTC | 2 cut(s) | 181, 511 |
| BfoI | RGCGCY | 1 cut(s) | 641 |
| BisI | GCNGC | 5 cut(s) | 60, 116, 410, 413, 553 |
| BlpI | GCTNAGC | 1 cut(s) | 307 |
| BlsI | GCNGC | 5 cut(s) | 61, 117, 411, 414, 554 |
| BmcAI | AGTACT | 1 cut(s) | 824 |
| Bme1390I | CCNGG | 5 cut(s) | 53, 146, 226, 829, 911 |
| Bme18I | GGWCC | 1 cut(s) | 239 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 682 |
| BmgBI | CACGTC | 1 cut(s) | 684 |
| BmgT120I | GGNCC | 3 cut(s) | 139, 217, 239 |
| BmiI | GGNNCC | 8 cut(s) | 101, 230, 348, 594, 639, 721, 908, 936 |
| BmrFI | CCNGG | 5 cut(s) | 53, 146, 226, 829, 911 |
| BmsI | GCATC | 2 cut(s) | 71, 942 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 295, 327 |
| BpmI | CTGGAG | 1 cut(s) | 850 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 307 |
| Bpu14I | TTCGAA | 1 cut(s) | 560 |
| BpuMI | CCSGG | 2 cut(s) | 226, 911 |
| BsaAI | YACGTR | 1 cut(s) | 925 |
| BsaBI | GATNNNNATC | 1 cut(s) | 956 |
| BsaHI | GRCGYC | 1 cut(s) | 638 |
| BsaJI | CCNNGG | 1 cut(s) | 872 |
| BsaWI | WCCGGW | 7 cut(s) | 96, 250, 349, 542, 716, 814, 937 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 161, 191, 319, 349, 656, 686, 809, 839 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 31, 747, 857 |
| Bse118I | RCCGGY | 3 cut(s) | 250, 343, 781 |
| Bse21I | CCTNAGG | 1 cut(s) | 703 |
| Bse3DI | GCAATG | 1 cut(s) | 733 |
| Bse8I | GATNNNNATC | 1 cut(s) | 956 |
| BseAI | TCCGGA | 1 cut(s) | 937 |
| BseBI | CCWGG | 3 cut(s) | 53, 146, 829 |
| BseDI | CCNNGG | 1 cut(s) | 872 |
| BseGI | GGATG | 3 cut(s) | 48, 280, 946 |
| BseJI | GATNNNNATC | 1 cut(s) | 956 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 31, 747, 857 |
| BseMI | GCAATG | 1 cut(s) | 733 |
| BseMII | CTCAG | 2 cut(s) | 293, 717 |
| BseRI | GAGGAG | 2 cut(s) | 194, 615 |
| BseSI | GKGCMC | 1 cut(s) | 911 |
| BseXI | GCAGC | 3 cut(s) | 127, 421, 564 |
| BseYI | CCCAGC | 1 cut(s) | 571 |
| BsgI | GTGCAG | 1 cut(s) | 910 |
| Bsh1236I | CGCG | 6 cut(s) | 237, 341, 473, 617, 777, 989 |
| Bsh1285I | CGRYCG | 1 cut(s) | 387 |
| BshFI | GGCC | 5 cut(s) | 47, 140, 219, 402, 442 |
| BshNI | GGYRCC | 2 cut(s) | 637, 906 |
| BshTI | ACCGGT | 1 cut(s) | 250 |
| BsiEI | CGRYCG | 1 cut(s) | 387 |
| BsiHKAI | GWGCWC | 3 cut(s) | 90, 666, 981 |
| BsiWI | CGTACG | 1 cut(s) | 966 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 31, 747, 857 |
| BsmAI | GTCTC | 2 cut(s) | 181, 511 |
| BsmBI | CGTCTC | 2 cut(s) | 181, 511 |
| BsnI | GGCC | 5 cut(s) | 47, 140, 219, 402, 442 |
| Bsp119I | TTCGAA | 1 cut(s) | 560 |
| Bsp1286I | GDGCHC | 6 cut(s) | 90, 666, 863, 911, 937, 981 |
| Bsp13I | TCCGGA | 1 cut(s) | 937 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 307 |
| BspANI | GGCC | 5 cut(s) | 47, 140, 219, 402, 442 |
| BspCNI | CTCAG | 2 cut(s) | 294, 716 |
| BspEI | TCCGGA | 1 cut(s) | 937 |
| BspFNI | CGCG | 6 cut(s) | 237, 341, 473, 617, 777, 989 |
| BspLI | GGNNCC | 8 cut(s) | 101, 230, 348, 594, 639, 721, 908, 936 |
| BspPI | GGATC | 5 cut(s) | 45, 88, 583, 715, 938 |
| BspQI | GCTCTTC | 1 cut(s) | 461 |
| BspT104I | TTCGAA | 1 cut(s) | 560 |
| BspT107I | GGYRCC | 2 cut(s) | 637, 906 |
| BsrBI | CCGCTC | 2 cut(s) | 599, 931 |
| BsrDI | GCAATG | 1 cut(s) | 733 |
| BsrFI | RCCGGY | 3 cut(s) | 250, 343, 781 |
| BssAI | RCCGGY | 3 cut(s) | 250, 343, 781 |
| BssECI | CCNNGG | 1 cut(s) | 872 |
| BssNI | GRCGYC | 1 cut(s) | 638 |
| BssSI | CACGAG | 2 cut(s) | 436, 659 |
| BssT1I | CCWWGG | 1 cut(s) | 872 |
| Bst2BI | CACGAG | 2 cut(s) | 436, 659 |
| Bst2UI | CCWGG | 3 cut(s) | 53, 146, 829 |
| Bst4CI | ACNGT | 6 cut(s) | 7, 152, 175, 842, 898, 983 |
| Bst6I | CTCTTC | 3 cut(s) | 277, 461, 644 |
| BstACI | GRCGYC | 1 cut(s) | 638 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 73 |
| BstBAI | YACGTR | 1 cut(s) | 925 |
| BstBI | TTCGAA | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 6 cut(s) | 142, 378, 779, 783, 863, 933 |
| BstDEI | CTNAG | 3 cut(s) | 302, 307, 703 |
| BstF5I | GGATG | 3 cut(s) | 48, 280, 946 |
| BstFNI | CGCG | 6 cut(s) | 237, 341, 473, 617, 777, 989 |
| BstH2I | RGCGCY | 1 cut(s) | 641 |
| BstHHI | GCGC | 5 cut(s) | 343, 473, 617, 640, 991 |
| BstMAI | GTCTC | 2 cut(s) | 181, 511 |
| BstMCI | CGRYCG | 1 cut(s) | 387 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 73 |
| BstNI | CCWGG | 3 cut(s) | 53, 146, 829 |
| BstSCI | CCNGG | 5 cut(s) | 51, 144, 224, 827, 909 |
| BstSLI | GKGCMC | 1 cut(s) | 911 |
| BstUI | CGCG | 6 cut(s) | 237, 341, 473, 617, 777, 989 |
| BstV1I | GCAGC | 3 cut(s) | 127, 421, 564 |
| BstX2I | RGATCY | 1 cut(s) | 707 |
| BstYI | RGATCY | 1 cut(s) | 707 |
| Bsu36I | CCTNAGG | 1 cut(s) | 703 |
| BsuRI | GGCC | 5 cut(s) | 47, 140, 219, 402, 442 |
| BtgZI | GCGATG | 2 cut(s) | 48, 965 |
| BtrI | CACGTC | 1 cut(s) | 684 |
| BtsCI | GGATG | 3 cut(s) | 48, 280, 946 |
| BtsIMutI | CAGTG | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 6 cut(s) | 142, 378, 779, 783, 863, 933 |
| CaiI | CAGNNNCTG | 1 cut(s) | 710 |
| CfoI | GCGC | 5 cut(s) | 343, 473, 617, 640, 991 |
| Cfr10I | RCCGGY | 3 cut(s) | 250, 343, 781 |
| Cfr13I | GGNCC | 3 cut(s) | 139, 217, 239 |
| CpoI | CGGWCCG | 1 cut(s) | 239 |
| CseI | GACGC | 3 cut(s) | 243, 433, 493 |
| Csp6I | GTAC | 6 cut(s) | 153, 823, 838, 894, 967, 1012 |
| CspAI | ACCGGT | 1 cut(s) | 250 |
| CspI | CGGWCCG | 1 cut(s) | 239 |
| CviAII | CATG | 4 cut(s) | 82, 221, 421, 526 |
| CviQI | GTAC | 6 cut(s) | 153, 823, 838, 894, 967, 1012 |
| DdeI | CTNAG | 3 cut(s) | 302, 307, 703 |
| DinI | GGCGCC | 1 cut(s) | 639 |
| DraIII | CACNNNGTG | 1 cut(s) | 687 |
| DriI | GACNNNNNGTC | 1 cut(s) | 682 |
| EaeI | YGGCCR | 1 cut(s) | 400 |
| Eam1104I | CTCTTC | 3 cut(s) | 277, 461, 644 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 682 |
| EarI | CTCTTC | 3 cut(s) | 277, 461, 644 |
| EciI | GGCGGA | 1 cut(s) | 688 |
| Eco130I | CCWWGG | 1 cut(s) | 872 |
| Eco147I | AGGCCT | 1 cut(s) | 442 |
| Eco24I | GRGCYC | 2 cut(s) | 863, 937 |
| Eco47I | GGWCC | 1 cut(s) | 239 |
| Eco57I | CTGAAG | 1 cut(s) | 484 |
| Eco72I | CACGTG | 1 cut(s) | 925 |
| Eco81I | CCTNAGG | 1 cut(s) | 703 |
| EcoRI | GAATTC | 2 cut(s) | 20, 482 |
| EcoRII | CCWGG | 3 cut(s) | 51, 144, 827 |
| EcoT14I | CCWWGG | 1 cut(s) | 872 |
| EcoT38I | GRGCYC | 2 cut(s) | 863, 937 |
| EgeI | GGCGCC | 1 cut(s) | 639 |
| EheI | GGCGCC | 1 cut(s) | 639 |
| ErhI | CCWWGG | 1 cut(s) | 872 |
| Esp3I | CGTCTC | 2 cut(s) | 181, 511 |
| FaeI | CATG | 4 cut(s) | 85, 224, 424, 529 |
| FaiI | YATR | 4 cut(s) | 83, 222, 422, 527 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 482, 514 |
| FatI | CATG | 4 cut(s) | 81, 220, 420, 525 |
| FauI | CCCGC | 4 cut(s) | 149, 346, 604, 924 |
| Fnu4HI | GCNGC | 5 cut(s) | 60, 116, 410, 413, 553 |
| FokI | GGATG | 3 cut(s) | 35, 267, 953 |
| FriOI | GRGCYC | 2 cut(s) | 863, 937 |
| Fsp4HI | GCNGC | 5 cut(s) | 60, 116, 410, 413, 553 |
| GlaI | GCGC | 5 cut(s) | 342, 472, 616, 639, 990 |
| GluI | GCNGC | 5 cut(s) | 60, 116, 410, 413, 553 |
| GsaI | CCCAGC | 1 cut(s) | 575 |
| GsuI | CTGGAG | 1 cut(s) | 850 |
| HaeII | RGCGCY | 1 cut(s) | 641 |
| HaeIII | GGCC | 5 cut(s) | 47, 140, 219, 402, 442 |
| HgaI | GACGC | 3 cut(s) | 243, 433, 493 |
| HhaI | GCGC | 5 cut(s) | 343, 473, 617, 640, 991 |
| Hin1I | GRCGYC | 1 cut(s) | 638 |
| Hin1II | CATG | 4 cut(s) | 85, 224, 424, 529 |
| Hin6I | GCGC | 5 cut(s) | 341, 471, 615, 638, 989 |
| HinP1I | GCGC | 5 cut(s) | 341, 471, 615, 638, 989 |
| HincII | GTYRAC | 1 cut(s) | 1020 |
| HindII | GTYRAC | 1 cut(s) | 1020 |
| HinfI | GANTC | 4 cut(s) | 334, 389, 772, 1016 |
| HphI | GGTGA | 5 cut(s) | 154, 279, 532, 772, 910 |
| Hpy166II | GTNNAC | 3 cut(s) | 265, 1012, 1020 |
| Hpy188I | TCNGA | 6 cut(s) | 42, 213, 233, 333, 676, 846 |
| Hpy188III | TCNNGA | 5 cut(s) | 25, 436, 659, 705, 938 |
| Hpy8I | GTNNAC | 3 cut(s) | 265, 1012, 1020 |
| Hpy99I | CGWCG | 6 cut(s) | 237, 523, 535, 583, 680, 688 |
| HpyAV | CCTTC | 5 cut(s) | 37, 300, 460, 741, 965 |
| HpyCH4III | ACNGT | 6 cut(s) | 7, 152, 175, 842, 898, 983 |
| HpyCH4IV | ACGT | 4 cut(s) | 683, 924, 965, 1022 |
| HpyCH4V | TGCA | 3 cut(s) | 76, 690, 891 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 73 |
| HpyF3I | CTNAG | 3 cut(s) | 302, 307, 703 |
| HpySE526I | ACGT | 4 cut(s) | 683, 924, 965, 1022 |
| Hsp92I | GRCGYC | 1 cut(s) | 638 |
| Hsp92II | CATG | 4 cut(s) | 85, 224, 424, 529 |
| HspAI | GCGC | 5 cut(s) | 341, 471, 615, 638, 989 |
| KasI | GGCGCC | 1 cut(s) | 637 |
| Kpn2I | TCCGGA | 1 cut(s) | 937 |
| KroI | GCCGGC | 1 cut(s) | 781 |
| KroNI | GCCGGC | 1 cut(s) | 783 |
| LguI | GCTCTTC | 1 cut(s) | 461 |
| Lsp1109I | GCAGC | 3 cut(s) | 127, 421, 564 |
| LweI | GCATC | 2 cut(s) | 71, 942 |
| MaeII | ACGT | 4 cut(s) | 683, 924, 965, 1022 |
| MaeIII | GTNAC | 4 cut(s) | 352, 656, 961, 983 |
| MbiI | CCGCTC | 2 cut(s) | 599, 931 |
| MboII | GAAGA | 7 cut(s) | 40, 264, 267, 478, 577, 661, 775 |
| MflI | RGATCY | 1 cut(s) | 707 |
| MhlI | GDGCHC | 6 cut(s) | 90, 666, 863, 911, 937, 981 |
| MluCI | AATT | 2 cut(s) | 20, 482 |
| Mly113I | GGCGCC | 1 cut(s) | 638 |
| MlyI | GAGTC | 3 cut(s) | 328, 398, 1025 |
| MmeI | TCCRAC | 3 cut(s) | 256, 356, 699 |
| MroI | TCCGGA | 1 cut(s) | 937 |
| MroNI | GCCGGC | 1 cut(s) | 781 |
| MseI | TTAA | 1 cut(s) | 645 |
| MspR9I | CCNGG | 5 cut(s) | 53, 146, 226, 829, 911 |
| MvaI | CCWGG | 3 cut(s) | 53, 146, 829 |
| MvnI | CGCG | 6 cut(s) | 237, 341, 473, 617, 777, 989 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 73 |
| NaeI | GCCGGC | 1 cut(s) | 783 |
| NarI | GGCGCC | 1 cut(s) | 638 |
| NciI | CCSGG | 2 cut(s) | 226, 911 |
| NgoMIV | GCCGGC | 1 cut(s) | 781 |
| NlaIII | CATG | 4 cut(s) | 85, 224, 424, 529 |
| NlaIV | GGNNCC | 8 cut(s) | 101, 230, 348, 594, 639, 721, 908, 936 |
| NmuCI | GTSAC | 2 cut(s) | 656, 983 |
| NspV | TTCGAA | 1 cut(s) | 560 |
| PceI | AGGCCT | 1 cut(s) | 442 |
| PciSI | GCTCTTC | 1 cut(s) | 461 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 389, 515, 527, 672, 966 |
| PdiI | GCCGGC | 1 cut(s) | 783 |
| PfeI | GAWTC | 1 cut(s) | 772 |
| Pfl23II | CGTACG | 1 cut(s) | 966 |
| PflFI | GACNNNGTC | 1 cut(s) | 237 |
| PfoI | TCCNGGA | 2 cut(s) | 51, 827 |
| PinAI | ACCGGT | 1 cut(s) | 250 |
| PkrI | GCNGC | 5 cut(s) | 61, 117, 411, 414, 554 |
| Ple19I | CGATCG | 1 cut(s) | 387 |
| PleI | GAGTC | 3 cut(s) | 328, 397, 1024 |
| PluTI | GGCGCC | 1 cut(s) | 641 |
| PmaCI | CACGTG | 1 cut(s) | 925 |
| PmlI | CACGTG | 1 cut(s) | 925 |
| PpsI | GAGTC | 3 cut(s) | 328, 397, 1024 |
| Ppu21I | YACGTR | 1 cut(s) | 925 |
| Psp6I | CCWGG | 3 cut(s) | 51, 144, 827 |
| PspCI | CACGTG | 1 cut(s) | 925 |
| PspFI | CCCAGC | 1 cut(s) | 571 |
| PspGI | CCWGG | 3 cut(s) | 51, 144, 827 |
| PspLI | CGTACG | 1 cut(s) | 966 |
| PspN4I | GGNNCC | 8 cut(s) | 101, 230, 348, 594, 639, 721, 908, 936 |
| PspPI | GGNCC | 3 cut(s) | 139, 217, 239 |
| PstNI | CAGNNNCTG | 1 cut(s) | 710 |
| PsuI | RGATCY | 1 cut(s) | 707 |
| PsyI | GACNNNGTC | 1 cut(s) | 237 |
| PvuI | CGATCG | 1 cut(s) | 387 |
| RsaI | GTAC | 6 cut(s) | 154, 824, 839, 895, 968, 1013 |
| RsaNI | GTAC | 6 cut(s) | 153, 823, 838, 894, 967, 1012 |
| Rsr2I | CGGWCCG | 1 cut(s) | 239 |
| RsrII | CGGWCCG | 1 cut(s) | 239 |
| SapI | GCTCTTC | 1 cut(s) | 461 |
| SaqAI | TTAA | 1 cut(s) | 645 |
| SatI | GCNGC | 5 cut(s) | 60, 116, 410, 413, 553 |
| Sau96I | GGNCC | 3 cut(s) | 139, 217, 239 |
| ScaI | AGTACT | 1 cut(s) | 824 |
| SchI | GAGTC | 3 cut(s) | 328, 398, 1025 |
| ScrFI | CCNGG | 5 cut(s) | 53, 146, 226, 829, 911 |
| SduI | GDGCHC | 6 cut(s) | 90, 666, 863, 911, 937, 981 |
| SfaNI | GCATC | 2 cut(s) | 71, 942 |
| SfoI | GGCGCC | 1 cut(s) | 639 |
| SfuI | TTCGAA | 1 cut(s) | 560 |
| SinI | GGWCC | 1 cut(s) | 239 |
| Sse9I | AATT | 2 cut(s) | 20, 482 |
| SseBI | AGGCCT | 1 cut(s) | 442 |
| SspDI | GGCGCC | 1 cut(s) | 637 |
| StuI | AGGCCT | 1 cut(s) | 442 |
| StyD4I | CCNGG | 5 cut(s) | 51, 144, 224, 827, 909 |
| StyI | CCWWGG | 1 cut(s) | 872 |
| TaaI | ACNGT | 6 cut(s) | 7, 152, 175, 842, 898, 983 |
| TaiI | ACGT | 4 cut(s) | 686, 927, 968, 1025 |
| TaqI | TCGA | 6 cut(s) | 387, 392, 429, 458, 560, 581 |
| TasI | AATT | 2 cut(s) | 20, 482 |
| TatI | WGTACW | 1 cut(s) | 822 |
| TauI | GCSGC | 2 cut(s) | 62, 415 |
| TfiI | GAWTC | 1 cut(s) | 772 |
| Tru1I | TTAA | 1 cut(s) | 645 |
| Tru9I | TTAA | 1 cut(s) | 645 |
| TscAI | CASTG | 1 cut(s) | 306 |
| TseFI | GTSAC | 2 cut(s) | 656, 983 |
| TseI | GCWGC | 3 cut(s) | 115, 409, 552 |
| Tsp45I | GTSAC | 2 cut(s) | 656, 983 |
| TspDTI | ATGAA | 1 cut(s) | 514 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| TspRI | CASTG | 1 cut(s) | 306 |
| Tth111I | GACNNNGTC | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 1 cut(s) | 239 |
| XapI | RAATTY | 2 cut(s) | 20, 482 |
| ZrmI | AGTACT | 1 cut(s) | 824 |