Rroxscaffold_7G00163150
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
5511866 .. 5513879
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163150.1

Sequence Viewer

Length: 1035 bp
ATGGCGGTGGAGATGATGAGCTTTCCGAAGATGGAAGACCAAAAGGCCATCCAGGAGGCCGCATCGCAAGGCTTGAAGAGCATGGAGCACCTGATTCGTTACCTCTCTCACCAGCAACAGTCTAACCAGCCCTCCTCTCGCGTGGACTGCACCGACCTCACAGACCACACCGTCTCCAAGTTCAAAAAGGTCATTTCCCTTCTGAACCGGACCGGCCACGCCCGGTTCAGGCGCGGACCGGTCGCCGCGGTTCCGGCTCATCATCATCATCATCATCAGTTCTCTTCTTCTTCTTCTTCTTCTTCTCCGCCGTCCACCTCTCTCCCCTTCCCTCCCTCCCAGACCCTGAGCTTGGCTCCGGCACCCGTCGCTCCCCCGGCGATTGCTCCTCCGGCTCCGGTCAAGGCTCCGGAGACTAATTTTGCTCATTCCATGACGCTTGACTTCACCAGGCCTAATGCTCTGGCCTCAAACCCTAAGTGCACCGACATCGAGTTCAGCGTCTCGTCCAGCTCGTCGTTCATGTCGTCGGCCATCACCGGAGACAACAGCGTCTCCAACGGCAAGCTCGGTCTGTTCATTGCCCCAAATCCGGCCCCGGCGGTCTCCGGCGCCAAGCCTCCGCTCTCCGCCGCGCAGTTTAAGAAGCGGTGCCACGAGCACGACCACTCCGACGATGTCTCCTGCAAGTTATCTGGATCCGGATCCGCTTCCGGGTCGGGCAAGTGCCATTGCTCCAAGAGAAGGAAAAATCGGGTGAAGAAAACAATCCGAGTCCCGGCGATTAGTTCAAAGATCGCCGATATTCCGCCGGACGAGTACTCCTGGAGAAAGTACGGCCAGAAGCCGATCAAAGGCTCACCTTACCCAAGGGGTTATTACAAGTGTAGTACAGTGAGGGGGTGTCCGGCGAGAAAACACGTGGAGCGAGCACCGGACGATCCGGCGATGCTGATTGTAACGTACGAGGGGGAGCATCGACACGCTCCGGATAATATGAGTGGCGGAGTTGGGATGGTATTCGAGTCAACGTGA

Protein Analysis

344

Amino Acids

37.13

Weight (kDa)

9.53

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 215 - 268 1.3e-19 Plant zinc cluster domain
WRKY PF03106 272 - 328 8.2e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 551
AccB1I GGYRCC 3 cut(s) 361, 611, 651
AccBSI CCGCTC 1 cut(s) 625
AccII CGCG 4 cut(s) 141, 234, 248, 635
AccIII TCCGGA 3 cut(s) 409, 701, 988
AclWI GGATC 5 cut(s) 693, 699, 706, 712, 935
AcoI YGGCCR 3 cut(s) 214, 531, 838
AcvI CACGTG 1 cut(s) 922
AcyI GRCGYC 1 cut(s) 612
AfaI GTAC 4 cut(s) 821, 836, 892, 965
AfiI CCNNNNNNNGG 7 cut(s) 228, 352, 592, 714, 744, 778, 854
AflIII ACRYGT 1 cut(s) 919
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 76, 184, 792
AjnI CCWGG 3 cut(s) 51, 449, 824
AluBI AGCT 4 cut(s) 21, 351, 513, 568
AluI AGCT 4 cut(s) 21, 351, 513, 568
Alw21I GWGCWC 4 cut(s) 90, 485, 663, 934
Alw26I GTCTC 7 cut(s) 178, 407, 508, 537, 559, 610, 685
Alw44I GTGCAC 1 cut(s) 481
AlwI GGATC 5 cut(s) 693, 699, 706, 712, 935
AlwNI CAGNNNCTG 1 cut(s) 346
Aor13HI TCCGGA 3 cut(s) 409, 701, 988
AoxI GGCC 8 cut(s) 45, 57, 214, 452, 465, 531, 594, 838
ApaLI GTGCAC 1 cut(s) 481
AsiGI ACCGGT 1 cut(s) 238
AspLEI GCGC 3 cut(s) 234, 614, 637
AspS9I GGNCC 3 cut(s) 210, 236, 595
AsuC2I CCSGG 5 cut(s) 223, 377, 599, 715, 779
AsuHPI GGTGA 5 cut(s) 101, 439, 529, 769, 852
AvaII GGWCC 2 cut(s) 210, 236
BaeGI GKGCMC 1 cut(s) 485
BamHI GGATCC 2 cut(s) 698, 704
BanI GGYRCC 3 cut(s) 361, 611, 651
BauI CACGAG 1 cut(s) 656
BbrPI CACGTG 1 cut(s) 922
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 4 cut(s) 90, 485, 663, 934
BccI CCATC 4 cut(s) 25, 56, 542, 1009
BceAI ACGGC 3 cut(s) 295, 577, 853
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 472, 506
BciT130I CCWGG 3 cut(s) 53, 451, 826
BcnI CCSGG 5 cut(s) 223, 377, 599, 715, 779
BcoDI GTCTC 7 cut(s) 178, 407, 508, 537, 559, 610, 685
BfoI RGCGCY 1 cut(s) 615
BisI GCNGC 3 cut(s) 60, 246, 633
BlsI GCNGC 3 cut(s) 61, 247, 634
BmcAI AGTACT 1 cut(s) 821
Bme1390I CCNGG 8 cut(s) 53, 223, 377, 451, 599, 715, 779, 826
Bme18I GGWCC 2 cut(s) 210, 236
BmgT120I GGNCC 3 cut(s) 210, 236, 595
BmrFI CCNGG 8 cut(s) 53, 223, 377, 451, 599, 715, 779, 826
BmsI GCATC 3 cut(s) 71, 939, 985
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpmI CTGGAG 1 cut(s) 847
Bpu10I CCTNAGC 1 cut(s) 347
BpuMI CCSGG 5 cut(s) 223, 377, 599, 715, 779
BsaAI YACGTR 1 cut(s) 922
BsaBI GATNNNNATC 1 cut(s) 703
BsaHI GRCGYC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 4 cut(s) 246, 375, 597, 869
BsaWI WCCGGW 8 cut(s) 207, 238, 397, 409, 539, 701, 934, 988
Bsc4I CCNNNNNNNGG 7 cut(s) 228, 352, 592, 714, 744, 778, 854
Bse118I RCCGGY 2 cut(s) 212, 238
Bse3DI GCAATG 2 cut(s) 579, 730
Bse8I GATNNNNATC 1 cut(s) 703
BseAI TCCGGA 3 cut(s) 409, 701, 988
BseBI CCWGG 3 cut(s) 53, 451, 826
BseDI CCNNGG 4 cut(s) 246, 375, 597, 869
BseGI GGATG 2 cut(s) 48, 1020
BseJI GATNNNNATC 1 cut(s) 703
BseLI CCNNNNNNNGG 7 cut(s) 228, 352, 592, 714, 744, 778, 854
BseMI GCAATG 2 cut(s) 579, 730
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 124, 378
BseSI GKGCMC 1 cut(s) 485
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 4 cut(s) 141, 234, 248, 635
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 8 cut(s) 47, 59, 216, 454, 467, 533, 596, 840
BshNI GGYRCC 3 cut(s) 361, 611, 651
BshTI ACCGGT 1 cut(s) 238
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 4 cut(s) 90, 485, 663, 934
BsiWI CGTACG 1 cut(s) 963
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 7 cut(s) 228, 352, 592, 714, 744, 778, 854
BsmAI GTCTC 7 cut(s) 178, 407, 508, 537, 559, 610, 685
BsmBI CGTCTC 3 cut(s) 178, 508, 559
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 8 cut(s) 47, 59, 216, 454, 467, 533, 596, 840
Bso31I GGTCTC 1 cut(s) 610
Bsp1286I GDGCHC 4 cut(s) 90, 485, 663, 934
Bsp13I TCCGGA 3 cut(s) 409, 701, 988
Bsp143I GATC 5 cut(s) 698, 704, 795, 849, 940
BspANI GGCC 8 cut(s) 47, 59, 216, 454, 467, 533, 596, 840
BspCNI CTCAG 1 cut(s) 339
BspEI TCCGGA 3 cut(s) 409, 701, 988
BspFNI CGCG 4 cut(s) 141, 234, 248, 635
BspPI GGATC 5 cut(s) 693, 699, 706, 712, 935
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 3 cut(s) 361, 611, 651
BspTNI GGTCTC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 625
BsrDI GCAATG 2 cut(s) 579, 730
BsrFI RCCGGY 2 cut(s) 212, 238
BssAI RCCGGY 2 cut(s) 212, 238
BssECI CCNNGG 4 cut(s) 246, 375, 597, 869
BssMI GATC 5 cut(s) 698, 704, 795, 849, 940
BssNI GRCGYC 1 cut(s) 612
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 1 cut(s) 869
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 3 cut(s) 53, 451, 826
Bst4CI ACNGT 3 cut(s) 120, 172, 895
Bst6I CTCTTC 2 cut(s) 71, 289
BstACI GRCGYC 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 922
BstC8I GCNNGC 2 cut(s) 566, 930
BstDEI CTNAG 2 cut(s) 347, 477
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 48, 1020
BstFNI CGCG 4 cut(s) 141, 234, 248, 635
BstH2I RGCGCY 1 cut(s) 615
BstHHI GCGC 3 cut(s) 234, 614, 637
BstKTI GATC 5 cut(s) 701, 707, 798, 852, 943
BstMAI GTCTC 7 cut(s) 178, 407, 508, 537, 559, 610, 685
BstMBI GATC 5 cut(s) 698, 704, 795, 849, 940
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 368, 377, 392
BstNI CCWGG 3 cut(s) 53, 451, 826
BstSCI CCNGG 8 cut(s) 51, 221, 375, 449, 597, 713, 777, 824
BstSLI GKGCMC 1 cut(s) 485
BstUI CGCG 4 cut(s) 141, 234, 248, 635
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 698, 704
BstYI RGATCY 2 cut(s) 698, 704
BsuRI GGCC 8 cut(s) 47, 59, 216, 454, 467, 533, 596, 840
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 2 cut(s) 48, 962
BtsCI GGATG 2 cut(s) 48, 1020
BtsIMutI CAGTG 1 cut(s) 900
Cac8I GCNNGC 2 cut(s) 566, 930
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 3 cut(s) 234, 614, 637
Cfr10I RCCGGY 2 cut(s) 212, 238
Cfr13I GGNCC 3 cut(s) 210, 236, 595
Cfr42I CCGCGG 1 cut(s) 249
CpoI CGGWCCG 2 cut(s) 210, 236
CseI GACGC 3 cut(s) 445, 490, 541
Csp6I GTAC 4 cut(s) 820, 835, 891, 964
CspAI ACCGGT 1 cut(s) 238
CspI CGGWCCG 2 cut(s) 210, 236
CviAII CATG 3 cut(s) 82, 433, 523
CviQI GTAC 4 cut(s) 820, 835, 891, 964
DdeI CTNAG 2 cut(s) 347, 477
DinI GGCGCC 1 cut(s) 613
DpnI GATC 5 cut(s) 700, 706, 797, 851, 942
DpnII GATC 5 cut(s) 698, 704, 795, 849, 940
DrdI GACNNNNNNGTC 2 cut(s) 170, 551
DseDI GACNNNNNNGTC 2 cut(s) 170, 551
EaeI YGGCCR 3 cut(s) 214, 531, 838
Eam1104I CTCTTC 2 cut(s) 71, 289
EarI CTCTTC 2 cut(s) 71, 289
EciI GGCGGA 4 cut(s) 297, 619, 798, 1020
Eco130I CCWWGG 1 cut(s) 869
Eco147I AGGCCT 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 610
Eco47I GGWCC 2 cut(s) 210, 236
Eco72I CACGTG 1 cut(s) 922
EcoRII CCWGG 3 cut(s) 51, 449, 824
EcoT14I CCWWGG 1 cut(s) 869
EgeI GGCGCC 1 cut(s) 613
EheI GGCGCC 1 cut(s) 613
ErhI CCWWGG 1 cut(s) 869
Esp3I CGTCTC 3 cut(s) 178, 508, 559
FaeI CATG 3 cut(s) 85, 436, 526
FaiI YATR 4 cut(s) 83, 434, 524, 998
FaqI GGGAC 1 cut(s) 761
FatI CATG 3 cut(s) 81, 432, 522
Fnu4HI GCNGC 3 cut(s) 60, 246, 633
FokI GGATG 2 cut(s) 35, 1027
Fsp4HI GCNGC 3 cut(s) 60, 246, 633
GlaI GCGC 3 cut(s) 233, 613, 636
GluI GCNGC 3 cut(s) 60, 246, 633
GsuI CTGGAG 1 cut(s) 847
HaeII RGCGCY 1 cut(s) 615
HaeIII GGCC 8 cut(s) 47, 59, 216, 454, 467, 533, 596, 840
HgaI GACGC 3 cut(s) 445, 490, 541
HhaI GCGC 3 cut(s) 234, 614, 637
Hin1I GRCGYC 1 cut(s) 612
Hin1II CATG 3 cut(s) 85, 436, 526
Hin6I GCGC 3 cut(s) 232, 612, 635
HinP1I GCGC 3 cut(s) 232, 612, 635
HincII GTYRAC 1 cut(s) 1029
HindII GTYRAC 1 cut(s) 1029
HinfI GANTC 3 cut(s) 94, 774, 1025
HphI GGTGA 5 cut(s) 101, 439, 529, 769, 852
Hpy166II GTNNAC 4 cut(s) 145, 315, 483, 1029
Hpy188I TCNGA 4 cut(s) 27, 204, 673, 773
Hpy188III TCNNGA 4 cut(s) 410, 696, 702, 989
Hpy8I GTNNAC 4 cut(s) 145, 315, 483, 1029
Hpy99I CGWCG 4 cut(s) 371, 520, 532, 677
HpyAV CCTTC 3 cut(s) 209, 337, 738
HpyCH4III ACNGT 3 cut(s) 120, 172, 895
HpyCH4IV ACGT 3 cut(s) 921, 962, 1031
HpyCH4V TGCA 3 cut(s) 150, 483, 687
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 368, 377, 392
HpyF3I CTNAG 2 cut(s) 347, 477
HpySE526I ACGT 3 cut(s) 921, 962, 1031
Hsp92I GRCGYC 1 cut(s) 612
Hsp92II CATG 3 cut(s) 85, 436, 526
HspAI GCGC 3 cut(s) 232, 612, 635
KasI GGCGCC 1 cut(s) 611
Kpn2I TCCGGA 3 cut(s) 409, 701, 988
KspI CCGCGG 1 cut(s) 249
Kzo9I GATC 5 cut(s) 698, 704, 795, 849, 940
LguI GCTCTTC 1 cut(s) 71
LweI GCATC 3 cut(s) 71, 939, 985
MaeII ACGT 3 cut(s) 921, 962, 1031
MaeIII GTNAC 2 cut(s) 98, 958
MalI GATC 5 cut(s) 700, 706, 797, 851, 942
MbiI CCGCTC 1 cut(s) 625
MboI GATC 5 cut(s) 698, 704, 795, 849, 940
MflI RGATCY 2 cut(s) 698, 704
MhlI GDGCHC 4 cut(s) 90, 485, 663, 934
MluCI AATT 1 cut(s) 418
Mly113I GGCGCC 1 cut(s) 612
MlyI GAGTC 2 cut(s) 783, 1034
MmeI TCCRAC 2 cut(s) 582, 696
MroI TCCGGA 3 cut(s) 409, 701, 988
MseI TTAA 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 8 cut(s) 53, 223, 377, 451, 599, 715, 779, 826
MvaI CCWGG 3 cut(s) 53, 451, 826
MvnI CGCG 4 cut(s) 141, 234, 248, 635
MwoI GCNNNNNNNGC 6 cut(s) 78, 147, 254, 368, 377, 392
NarI GGCGCC 1 cut(s) 612
NciI CCSGG 5 cut(s) 223, 377, 599, 715, 779
NdeII GATC 5 cut(s) 698, 704, 795, 849, 940
NlaIII CATG 3 cut(s) 85, 436, 526
PceI AGGCCT 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 4 cut(s) 498, 512, 524, 669
PfeI GAWTC 1 cut(s) 94
Pfl23II CGTACG 1 cut(s) 963
PflFI GACNNNGTC 1 cut(s) 677
PfoI TCCNGGA 2 cut(s) 51, 824
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 3 cut(s) 61, 247, 634
PleI GAGTC 2 cut(s) 782, 1033
PluTI GGCGCC 1 cut(s) 615
PmaCI CACGTG 1 cut(s) 922
PmlI CACGTG 1 cut(s) 922
PpsI GAGTC 2 cut(s) 782, 1033
Ppu21I YACGTR 1 cut(s) 922
Psp6I CCWGG 3 cut(s) 51, 449, 824
PspCI CACGTG 1 cut(s) 922
PspGI CCWGG 3 cut(s) 51, 449, 824
PspLI CGTACG 1 cut(s) 963
PspPI GGNCC 3 cut(s) 210, 236, 595
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 2 cut(s) 698, 704
PsyI GACNNNGTC 1 cut(s) 677
RsaI GTAC 4 cut(s) 821, 836, 892, 965
RsaNI GTAC 4 cut(s) 820, 835, 891, 964
Rsr2I CGGWCCG 2 cut(s) 210, 236
RsrII CGGWCCG 2 cut(s) 210, 236
SacII CCGCGG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 3 cut(s) 60, 246, 633
Sau3AI GATC 5 cut(s) 698, 704, 795, 849, 940
Sau96I GGNCC 3 cut(s) 210, 236, 595
ScaI AGTACT 1 cut(s) 821
SchI GAGTC 2 cut(s) 783, 1034
ScrFI CCNGG 8 cut(s) 53, 223, 377, 451, 599, 715, 779, 826
SduI GDGCHC 4 cut(s) 90, 485, 663, 934
SfaNI GCATC 3 cut(s) 71, 939, 985
SfoI GGCGCC 1 cut(s) 613
Sfr303I CCGCGG 1 cut(s) 249
SgrBI CCGCGG 1 cut(s) 249
SinI GGWCC 2 cut(s) 210, 236
Sse9I AATT 1 cut(s) 418
SseBI AGGCCT 1 cut(s) 454
SspDI GGCGCC 1 cut(s) 611
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 8 cut(s) 51, 221, 375, 449, 597, 713, 777, 824
StyI CCWWGG 1 cut(s) 869
TaaI ACNGT 3 cut(s) 120, 172, 895
TaiI ACGT 3 cut(s) 924, 965, 1034
TaqI TCGA 3 cut(s) 492, 979, 1023
TaqII GACCGA 1 cut(s) 560
TasI AATT 1 cut(s) 418
TatI WGTACW 2 cut(s) 819, 890
TauI GCSGC 3 cut(s) 62, 248, 635
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 1 cut(s) 900
TspDTI ATGAA 2 cut(s) 511, 568
TspRI CASTG 1 cut(s) 900
Tth111I GACNNNGTC 1 cut(s) 677
VneI GTGCAC 1 cut(s) 481
VpaK11BI GGWCC 2 cut(s) 210, 236
ZrmI AGTACT 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.