Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Reverse (-)

24320203 .. 24321656

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1239100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTATAGATCTAGTTGGCTTCTCCAAGATGGACGATCGGACTGCCGTGCAAGAAGCTGCCTCCGCCGGCCTGCAAAGCATGCAGCACCTCATCCGCACCCTGTCCAATCAAACCCCGTCCCACACTCCACTCGATTGCCGGGAAATCAGCGACTTCACCGTCACCAAGTTCAAGCACCTAATCTCCGTCTTGAACCGGACCGGTCACGCCCGGTTCCGTCGCGGACCGGCCAAACCAGCTTCAGATTCGGTCCATCCGAAACCTCAGACGACTTTGACTGCTTTTCAAACCCCAAAATCGGACAAGGACTACTCCACTACTGTGTCCCCTCCGGTCTCCACTACGTCGTCGTTTTTTTCCTCAAACACAATCGGAGACGGCAGCGTTTCCAACGGTAAAACCTTCTCATCGATTTCTGTGCCTACGCCTCCGGCTTTCTCCGCTGGAAAACCGCCCCTTCCACAATCTCACCGGAAACGGTGTCACGAGGGCGAACCCGCTAAAACGTCGTCGTCGTCGGGCCACTGCCATTGTTCTAAAAGAAGGAAGTCTAAGGTTAAGAGGACGATCAGAGTGGCGGCGATTAGCTCGAAAACCGCCGATATACCTGCGGACGAGTTCGCCTGGAGAAAGTATGGTCAAAAGCCGATCAAGGGCTCACCTCACCCGAGAGGGTATTATAGGTGCAGTACAGTGAGAGGGTGTCCAGCAAGGAAACACGTGGAGAGAGCACAGGACGACCCCAAGATGCTCGTCGTTACCTACGAAGCTGAGCACCGTCACCCGCACCCTTACCCTTCCCTCACAGCCGCTAATGTGGGCCTTGTTTTCCAGTCGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

282

Amino Acids

30.73

Weight (kDa)

9.99

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	159 - 202	7.9e-16	Plant zinc cluster domain
WRKY	PF03106	206 - 263	4.6e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	619
AccII	CGCG	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	228
AcvI	CACGTG	1 cut(s)	724
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	2 cut(s)	301, 656
AflIII	ACRYGT	1 cut(s)	721
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	175, 196, 290
AjnI	CCWGG	1 cut(s)	626
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	4 cut(s)	59, 242, 591, 773
AluI	AGCT	4 cut(s)	59, 242, 591, 773
Alw21I	GWGCWC	2 cut(s)	736, 780
Alw26I	GTCTC	2 cut(s)	343, 372
Ama87I	CYCGRG	1 cut(s)	670
AoxI	GGCC	4 cut(s)	70, 231, 523, 823
ApeKI	GCWGC	3 cut(s)	59, 85, 384
AsiGI	ACCGGT	1 cut(s)	203
AspS9I	GGNCC	5 cut(s)	201, 227, 253, 523, 823
AsuC2I	CCSGG	2 cut(s)	143, 214
AsuHPI	GGTGA	6 cut(s)	151, 157, 464, 654, 659, 776
AvaI	CYCGRG	1 cut(s)	670
AvaII	GGWCC	3 cut(s)	201, 227, 253
BanII	GRGCYC	1 cut(s)	662
BauI	CACGAG	1 cut(s)	488
BbrPI	CACGTG	1 cut(s)	724
Bbv12I	GWGCWC	2 cut(s)	736, 780
BbvI	GCAGC	3 cut(s)	46, 97, 396
BccI	CCATC	2 cut(s)	25, 264
BceAI	ACGGC	2 cut(s)	32, 397
BcgI	CGANNNNNNTGC	6 cut(s)	26, 60, 403, 437, 593, 627
BciT130I	CCWGG	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	143, 214
BcoDI	GTCTC	2 cut(s)	343, 372
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	619
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	5 cut(s)	60, 86, 385, 582, 813
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	5 cut(s)	61, 87, 386, 583, 814
Bme1390I	CCNGG	3 cut(s)	143, 214, 628
Bme18I	GGWCC	3 cut(s)	201, 227, 253
BmeT110I	CYCGRG	1 cut(s)	670
BmgT120I	GGNCC	5 cut(s)	201, 227, 253, 523, 823
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	3 cut(s)	143, 214, 628
BmsI	GCATC	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	649
Bpu1102I	GCTNAGC	1 cut(s)	774
BpuMI	CCSGG	2 cut(s)	143, 214
Bsa29I	ATCGAT	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	724
BsaI	GGTCTC	1 cut(s)	343
BsaWI	WCCGGW	4 cut(s)	198, 203, 334, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 656
Bse118I	RCCGGY	3 cut(s)	68, 203, 229
Bse1I	ACTGG	1 cut(s)	835
BseBI	CCWGG	1 cut(s)	628
BseCI	ATCGAT	1 cut(s)	413
BseGI	GGATG	2 cut(s)	93, 256
BseLI	CCNNNNNNNGG	2 cut(s)	301, 656
BseMII	CTCAG	2 cut(s)	281, 765
BseNI	ACTGG	1 cut(s)	835
BseXI	GCAGC	3 cut(s)	46, 97, 396
BsgI	GTGCAG	1 cut(s)	709
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	72, 233, 525, 825
BshTI	ACCGGT	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	413
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	736, 780
BsiHKCI	CYCGRG	1 cut(s)	670
BsiSI	CCGG	9 cut(s)	69, 142, 199, 204, 214, 230, 335, 434, 475
BslFI	GGGAC	2 cut(s)	106, 313
BslI	CCNNNNNNNGG	2 cut(s)	301, 656
BsmAI	GTCTC	2 cut(s)	343, 372
BsmBI	CGTCTC	1 cut(s)	372
BsmFI	GGGAC	2 cut(s)	106, 313
BsnI	GGCC	4 cut(s)	72, 233, 525, 825
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	670
Bsp1286I	GDGCHC	3 cut(s)	662, 736, 780
Bsp143I	GATC	4 cut(s)	10, 37, 570, 651
Bsp1720I	GCTNAGC	1 cut(s)	774
BspANI	GGCC	4 cut(s)	72, 233, 525, 825
BspCNI	CTCAG	2 cut(s)	280, 766
BspDI	ATCGAT	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	218
BspMI	ACCTGC	1 cut(s)	619
BspTNI	GGTCTC	1 cut(s)	343
BsrFI	RCCGGY	3 cut(s)	68, 203, 229
BsrI	ACTGG	1 cut(s)	835
BssAI	RCCGGY	3 cut(s)	68, 203, 229
BssMI	GATC	4 cut(s)	10, 37, 570, 651
BssSI	CACGAG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	6 cut(s)	163, 325, 398, 483, 697, 782
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	724
BstC8I	GCNNGC	3 cut(s)	70, 74, 83
BstDEI	CTNAG	3 cut(s)	267, 555, 774
BstF5I	GGATG	2 cut(s)	93, 256
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	4 cut(s)	13, 40, 573, 654
BstMAI	GTCTC	2 cut(s)	343, 372
BstMBI	GATC	4 cut(s)	10, 37, 570, 651
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 78, 82, 239, 443
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	141, 212, 626
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	46, 97, 396
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	413
BsuRI	GGCC	4 cut(s)	72, 233, 525, 825
BsuTUI	ATCGAT	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	93, 256
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	526, 702
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	3 cut(s)	70, 74, 83
Cfr10I	RCCGGY	3 cut(s)	68, 203, 229
Cfr13I	GGNCC	5 cut(s)	201, 227, 253, 523, 823
ClaI	ATCGAT	1 cut(s)	413
CpoI	CGGWCCG	2 cut(s)	201, 227
Csp6I	GTAC	1 cut(s)	693
CspAI	ACCGGT	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CspI	CGGWCCG	2 cut(s)	201, 227
CviAII	CATG	1 cut(s)	82
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	3 cut(s)	267, 555, 774
DpnI	GATC	4 cut(s)	12, 39, 572, 653
DpnII	GATC	4 cut(s)	10, 37, 570, 651
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	3 cut(s)	201, 227, 253
Eco57I	CTGAAG	1 cut(s)	228
Eco72I	CACGTG	1 cut(s)	724
Eco88I	CYCGRG	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	662
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	1 cut(s)	85
FaiI	YATR	5 cut(s)	8, 83, 608, 639, 684
FaqI	GGGAC	2 cut(s)	106, 313
FatI	CATG	1 cut(s)	81
FauI	CCCGC	2 cut(s)	508, 795
Fnu4HI	GCNGC	5 cut(s)	60, 86, 385, 582, 813
FokI	GGATG	2 cut(s)	80, 243
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	5 cut(s)	60, 86, 385, 582, 813
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	5 cut(s)	60, 86, 385, 582, 813
GsuI	CTGGAG	1 cut(s)	649
HaeIII	GGCC	4 cut(s)	72, 233, 525, 825
HapII	CCGG	9 cut(s)	69, 142, 199, 204, 214, 230, 335, 434, 475
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	9 cut(s)	69, 142, 199, 204, 214, 230, 335, 434, 475
HphI	GGTGA	6 cut(s)	151, 157, 464, 654, 659, 776
Hpy188I	TCNGA	7 cut(s)	42, 247, 261, 270, 304, 377, 575
Hpy188III	TCNNGA	3 cut(s)	193, 488, 843
Hpy99I	CGWCG	8 cut(s)	225, 352, 355, 514, 517, 520, 523, 761
HpyAV	CCTTC	4 cut(s)	415, 470, 540, 810
HpyCH4III	ACNGT	6 cut(s)	163, 325, 398, 483, 697, 782
HpyCH4IV	ACGT	3 cut(s)	347, 509, 723
HpyCH4V	TGCA	4 cut(s)	52, 76, 85, 690
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 78, 82, 239, 443
HpyF3I	CTNAG	3 cut(s)	267, 555, 774
HpySE526I	ACGT	3 cut(s)	347, 509, 723
Hsp92II	CATG	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	10, 37, 570, 651
Lsp1109I	GCAGC	3 cut(s)	46, 97, 396
LweI	GCATC	1 cut(s)	741
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	3 cut(s)	347, 509, 723
MaeIII	GTNAC	5 cut(s)	163, 206, 485, 760, 782
MalI	GATC	4 cut(s)	12, 39, 572, 653
MboI	GATC	4 cut(s)	10, 37, 570, 651
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	3 cut(s)	662, 736, 780
MmeI	TCCRAC	1 cut(s)	417
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	9 cut(s)	69, 142, 199, 204, 214, 230, 335, 434, 475
MspR9I	CCNGG	3 cut(s)	143, 214, 628
MvaI	CCWGG	1 cut(s)	628
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	5 cut(s)	65, 78, 82, 239, 443
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	2 cut(s)	143, 214
NdeII	GATC	4 cut(s)	10, 37, 570, 651
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	4 cut(s)	163, 206, 485, 782
NspI	RCATGY	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	3 cut(s)	257, 515, 765
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	248
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	5 cut(s)	61, 87, 386, 583, 814
Ple19I	CGATCG	1 cut(s)	40
PmaCI	CACGTG	1 cut(s)	724
PmlI	CACGTG	1 cut(s)	724
Ppu21I	YACGTR	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	626
PspCI	CACGTG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	5 cut(s)	201, 227, 253, 523, 823
PsuI	RGATCY	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
RseI	CAYNNNNRTG	1 cut(s)	323
Rsr2I	CGGWCCG	2 cut(s)	201, 227
RsrII	CGGWCCG	2 cut(s)	201, 227
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	5 cut(s)	60, 86, 385, 582, 813
Sau3AI	GATC	4 cut(s)	10, 37, 570, 651
Sau96I	GGNCC	5 cut(s)	201, 227, 253, 523, 823
ScrFI	CCNGG	3 cut(s)	143, 214, 628
SduI	GDGCHC	3 cut(s)	662, 736, 780
SfaNI	GCATC	1 cut(s)	741
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	3 cut(s)	201, 227, 253
SmiMI	CAYNNNNRTG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	85
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	141, 212, 626
TaaI	ACNGT	6 cut(s)	163, 325, 398, 483, 697, 782
TaiI	ACGT	3 cut(s)	350, 512, 726
TaqI	TCGA	3 cut(s)	135, 413, 593
TaqII	GACCGA	1 cut(s)	241
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	2 cut(s)	584, 815
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	533, 702
TseFI	GTSAC	4 cut(s)	163, 206, 485, 782
TseI	GCWGC	3 cut(s)	59, 85, 384
Tsp45I	GTSAC	4 cut(s)	163, 206, 485, 782
TspGWI	ACGGA	2 cut(s)	178, 209
TspRI	CASTG	2 cut(s)	533, 702
VpaK11BI	GGWCC	3 cut(s)	201, 227, 253
XceI	RCATGY	1 cut(s)	85
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.