Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000061.1

Orthogroup ID

OG0002334

Physical Location & Seq

Genomic Coordinates Forward (+)

115507 .. 116647

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000061.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ctgagcttggctccggcacccgtcgcttccccggcgattgctcctccggctccggtcaaagctccggagactaattttgctcattccatgacgcttgacttcaccaggcctaatgcgctggcctcaaaccctaagtgcaccgacatcgagttcagcgtctcgtccagctcgtcgttcatgtcgtcggccatcaccggagacaacagcgtctccaacggcaagctcggtctgttcattgccccgaatccggcccctgccgtctccggcgccaagcctccgctctccgccgctccttttaagaagcggtgccacgagcacgaccgctccgacgatgtctcctgcaagttatccggatccggatccgcttccgggtcgggcaagtgccattgctccaagagaaggaaaaatcgggtgaagaaaacaatccgagtcccggcgattagttcaaagattgccgatattccaccggacgagtactcctggagaaagtacggccagaagccgatcaaaggctcaccttacccaaggggttattacaagtgtagtacagtgagggggtgtccggcgagaaaacacgtggagcgagcaccggatgatccggcgatgctgattgtaacgtacgagggggagcatcgacacgctccggataatatgagcggcggagttgggatggtattcgagtcaacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

229

Amino Acids

24.32

Weight (kDa)

9.49

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24570 AT4G31550 AT4G31550 AT4G31550
fragaria_vesca	FvH4_2g36730 FvH4_2g36730 FvH4_4g06830 FvH4_4g06830
malus_domestica	MD08G1127200.v1.1 MD13G1239100.v1.1 MD15G1106600.v1.1 MD16G1244300.v1.1
prunus_persica	Prupe.1G071400_v2.0.a1 Prupe.1G459100_v2.0.a1
pyrus_communis	pycom13g21150 pycom15g09730 pycom16g20580
rosa_chinensis	RchiOBHm_Chr4g0398741 RchiOBHm_Chr6g0305101
rosa_laevigata	RLG00000009325 RLG00000010919
rosa_multiflora	Rmu_co8094374.1_g000001 Rmu_co8161446.1_g000001 Rmu_co8180642.1_g000001 Rmu_co8389589.1_g000001 Rmu_sc0000061.1_g000025 Rmu_sc0004729.1_g000022 Rmu_sc0011133.1_g000003
rosa_roxburghii	Rroxscaffold_5G00343690 Rroxscaffold_7G00163150
rosa_rugosa	Rorug04G0011200 Rorug06G0337300
rosa_samantha	Rh4AG089100 Rh4BG086100 Rh4CG097100 Rh4DG080700 Rh6AG449100 Rh6BG452000 Rh6CG462800 Rh6DG449500
rosa_wichuraiana	Rw4G007360 Rw6G039120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	3 cut(s)	16, 266, 306
AccBSI	CCGCTC	4 cut(s)	280, 290, 324, 657
AccIII	TCCGGA	4 cut(s)	64, 350, 356, 643
AciI	CCGC	8 cut(s)	278, 285, 288, 304, 322, 363, 657, 660
AclWI	GGATC	5 cut(s)	348, 354, 361, 367, 590
AcoI	YGGCCR	2 cut(s)	186, 493
AcvI	CACGTG	1 cut(s)	577
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	4 cut(s)	476, 491, 547, 620
AfiI	CCNNNNNNNGG	5 cut(s)	247, 369, 399, 433, 509
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	1 cut(s)	447
AjnI	CCWGG	2 cut(s)	104, 479
AluBI	AGCT	4 cut(s)	6, 62, 168, 223
AluI	AGCT	4 cut(s)	6, 62, 168, 223
Alw21I	GWGCWC	3 cut(s)	140, 318, 589
Alw26I	GTCTC	6 cut(s)	62, 163, 192, 214, 265, 340
Alw44I	GTGCAC	1 cut(s)	136
AlwI	GGATC	5 cut(s)	348, 354, 361, 367, 590
Aor13HI	TCCGGA	4 cut(s)	64, 350, 356, 643
AoxI	GGCC	5 cut(s)	107, 120, 186, 249, 493
ApaLI	GTGCAC	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	118, 269
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	3 cut(s)	32, 370, 434
AsuHPI	GGTGA	4 cut(s)	94, 184, 424, 507
BaeGI	GKGCMC	1 cut(s)	140
BamHI	GGATCC	2 cut(s)	353, 359
BanI	GGYRCC	3 cut(s)	16, 266, 306
BauI	CACGAG	1 cut(s)	311
BbrPI	CACGTG	1 cut(s)	577
Bbv12I	GWGCWC	3 cut(s)	140, 318, 589
BccI	CCATC	2 cut(s)	197, 664
BceAI	ACGGC	3 cut(s)	232, 242, 508
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	2 cut(s)	106, 481
BcnI	CCSGG	3 cut(s)	32, 370, 434
BcoDI	GTCTC	6 cut(s)	62, 163, 192, 214, 265, 340
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	2 cut(s)	288, 658
BlsI	GCNGC	2 cut(s)	289, 659
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	5 cut(s)	32, 106, 370, 434, 481
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	8 cut(s)	12, 18, 51, 252, 268, 308, 355, 361
BmrFI	CCNGG	5 cut(s)	32, 106, 370, 434, 481
BmsI	GCATC	2 cut(s)	594, 640
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	502
BpuMI	CCSGG	3 cut(s)	32, 370, 434
BsaAI	YACGTR	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	30, 524
BsaWI	WCCGGW	8 cut(s)	52, 64, 194, 350, 356, 466, 589, 643
BsaXI	ACNNNNNCTCC	8 cut(s)	194, 224, 308, 320, 338, 350, 461, 491
Bsc4I	CCNNNNNNNGG	5 cut(s)	247, 369, 399, 433, 509
Bse3DI	GCAATG	2 cut(s)	234, 385
Bse8I	GATNNNNATC	1 cut(s)	358
BseAI	TCCGGA	4 cut(s)	64, 350, 356, 643
BseBI	CCWGG	2 cut(s)	106, 481
BseDI	CCNNGG	2 cut(s)	30, 524
BseGI	GGATG	2 cut(s)	598, 675
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	5 cut(s)	247, 369, 399, 433, 509
BseMI	GCAATG	2 cut(s)	234, 385
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	5 cut(s)	109, 122, 188, 251, 495
BshNI	GGYRCC	3 cut(s)	16, 266, 306
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	3 cut(s)	140, 318, 589
BsiWI	CGTACG	1 cut(s)	618
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	5 cut(s)	247, 369, 399, 433, 509
BsmAI	GTCTC	6 cut(s)	62, 163, 192, 214, 265, 340
BsmBI	CGTCTC	3 cut(s)	163, 214, 265
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	5 cut(s)	109, 122, 188, 251, 495
Bsp1286I	GDGCHC	3 cut(s)	140, 318, 589
Bsp13I	TCCGGA	4 cut(s)	64, 350, 356, 643
Bsp143I	GATC	4 cut(s)	353, 359, 504, 595
BspACI	CCGC	8 cut(s)	278, 285, 288, 304, 322, 363, 657, 660
BspANI	GGCC	5 cut(s)	109, 122, 188, 251, 495
BspEI	TCCGGA	4 cut(s)	64, 350, 356, 643
BspLI	GGNNCC	8 cut(s)	12, 18, 51, 252, 268, 308, 355, 361
BspPI	GGATC	5 cut(s)	348, 354, 361, 367, 590
BspT107I	GGYRCC	3 cut(s)	16, 266, 306
BsrBI	CCGCTC	4 cut(s)	280, 290, 324, 657
BsrDI	GCAATG	2 cut(s)	234, 385
BssECI	CCNNGG	2 cut(s)	30, 524
BssMI	GATC	4 cut(s)	353, 359, 504, 595
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	106, 481
Bst4CI	ACNGT	1 cut(s)	550
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	3 cut(s)	120, 221, 585
BstDEI	CTNAG	2 cut(s)	2, 132
BstF5I	GGATG	2 cut(s)	598, 675
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	118, 269
BstKTI	GATC	4 cut(s)	356, 362, 507, 598
BstMAI	GTCTC	6 cut(s)	62, 163, 192, 214, 265, 340
BstMBI	GATC	4 cut(s)	353, 359, 504, 595
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 32, 47, 115
BstNI	CCWGG	2 cut(s)	106, 481
BstSCI	CCNGG	5 cut(s)	30, 104, 368, 432, 479
BstSLI	GKGCMC	1 cut(s)	140
BstX2I	RGATCY	2 cut(s)	353, 359
BstYI	RGATCY	2 cut(s)	353, 359
BsuRI	GGCC	5 cut(s)	109, 122, 188, 251, 495
BtgZI	GCGATG	1 cut(s)	617
BtsCI	GGATG	2 cut(s)	598, 675
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	3 cut(s)	120, 221, 585
CfoI	GCGC	2 cut(s)	118, 269
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	3 cut(s)	100, 145, 196
Csp6I	GTAC	4 cut(s)	475, 490, 546, 619
CviAII	CATG	2 cut(s)	88, 178
CviQI	GTAC	4 cut(s)	475, 490, 546, 619
DdeI	CTNAG	2 cut(s)	2, 132
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	4 cut(s)	355, 361, 506, 597
DpnII	GATC	4 cut(s)	353, 359, 504, 595
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	186, 493
EciI	GGCGGA	2 cut(s)	274, 675
Eco130I	CCWWGG	1 cut(s)	524
Eco147I	AGGCCT	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	104, 479
EcoT14I	CCWWGG	1 cut(s)	524
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	524
Esp3I	CGTCTC	3 cut(s)	163, 214, 265
FaeI	CATG	2 cut(s)	91, 181
FaiI	YATR	3 cut(s)	89, 179, 653
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	2 cut(s)	87, 177
Fnu4HI	GCNGC	2 cut(s)	288, 658
FokI	GGATG	2 cut(s)	605, 682
Fsp4HI	GCNGC	2 cut(s)	288, 658
GlaI	GCGC	2 cut(s)	117, 268
GluI	GCNGC	2 cut(s)	288, 658
GsuI	CTGGAG	1 cut(s)	502
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	109, 122, 188, 251, 495
HgaI	GACGC	3 cut(s)	100, 145, 196
HhaI	GCGC	2 cut(s)	118, 269
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	91, 181
Hin6I	GCGC	2 cut(s)	116, 267
HinP1I	GCGC	2 cut(s)	116, 267
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	3 cut(s)	244, 429, 680
HphI	GGTGA	4 cut(s)	94, 184, 424, 507
Hpy166II	GTNNAC	2 cut(s)	138, 684
Hpy188I	TCNGA	2 cut(s)	328, 428
Hpy188III	TCNNGA	4 cut(s)	65, 351, 357, 644
Hpy8I	GTNNAC	2 cut(s)	138, 684
Hpy99I	CGWCG	4 cut(s)	26, 175, 187, 332
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	3 cut(s)	576, 617, 686
HpyCH4V	TGCA	2 cut(s)	138, 342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 32, 47, 115
HpyF3I	CTNAG	2 cut(s)	2, 132
HpySE526I	ACGT	3 cut(s)	576, 617, 686
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	91, 181
HspAI	GCGC	2 cut(s)	116, 267
KasI	GGCGCC	1 cut(s)	266
Kpn2I	TCCGGA	4 cut(s)	64, 350, 356, 643
Kzo9I	GATC	4 cut(s)	353, 359, 504, 595
LweI	GCATC	2 cut(s)	594, 640
MaeII	ACGT	3 cut(s)	576, 617, 686
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	4 cut(s)	355, 361, 506, 597
MbiI	CCGCTC	4 cut(s)	280, 290, 324, 657
MboI	GATC	4 cut(s)	353, 359, 504, 595
MboII	GAAGA	1 cut(s)	427
MflI	RGATCY	2 cut(s)	353, 359
MhlI	GDGCHC	3 cut(s)	140, 318, 589
MluCI	AATT	1 cut(s)	73
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	2 cut(s)	438, 689
MmeI	TCCRAC	2 cut(s)	237, 351
MnlI	CCTC	5 cut(s)	54, 133, 285, 546, 616
MroI	TCCGGA	4 cut(s)	64, 350, 356, 643
MseI	TTAA	1 cut(s)	297
MspR9I	CCNGG	5 cut(s)	32, 106, 370, 434, 481
MvaI	CCWGG	2 cut(s)	106, 481
MwoI	GCNNNNNNNGC	4 cut(s)	23, 32, 47, 115
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	3 cut(s)	32, 370, 434
NdeII	GATC	4 cut(s)	353, 359, 504, 595
NlaIII	CATG	2 cut(s)	91, 181
NlaIV	GGNNCC	8 cut(s)	12, 18, 51, 252, 268, 308, 355, 361
PceI	AGGCCT	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	4 cut(s)	153, 167, 179, 324
PfeI	GAWTC	1 cut(s)	244
Pfl23II	CGTACG	1 cut(s)	618
PflFI	GACNNNGTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	289, 659
PleI	GAGTC	2 cut(s)	437, 688
PluTI	GGCGCC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	577
PpsI	GAGTC	2 cut(s)	437, 688
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	104, 479
PspCI	CACGTG	1 cut(s)	577
PspGI	CCWGG	2 cut(s)	104, 479
PspLI	CGTACG	1 cut(s)	618
PspN4I	GGNNCC	8 cut(s)	12, 18, 51, 252, 268, 308, 355, 361
PspPI	GGNCC	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	353, 359
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	4 cut(s)	476, 491, 547, 620
RsaNI	GTAC	4 cut(s)	475, 490, 546, 619
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	288, 658
Sau3AI	GATC	4 cut(s)	353, 359, 504, 595
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	2 cut(s)	438, 689
ScrFI	CCNGG	5 cut(s)	32, 106, 370, 434, 481
SduI	GDGCHC	3 cut(s)	140, 318, 589
SetI	ASST	8 cut(s)	8, 64, 170, 225, 520, 579, 620, 689
SfaNI	GCATC	2 cut(s)	594, 640
SfoI	GGCGCC	1 cut(s)	268
Sse9I	AATT	1 cut(s)	73
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	8 cut(s)	278, 285, 288, 304, 322, 363, 657, 660
SspDI	GGCGCC	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	5 cut(s)	30, 104, 368, 432, 479
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	3 cut(s)	579, 620, 689
TaqI	TCGA	3 cut(s)	147, 634, 678
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	73
TatI	WGTACW	2 cut(s)	474, 545
TauI	GCSGC	2 cut(s)	290, 660
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	555
TspDTI	ATGAA	2 cut(s)	166, 223
TspRI	CASTG	1 cut(s)	555
Tth111I	GACNNNGTC	1 cut(s)	332
VneI	GTGCAC	1 cut(s)	136
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.