Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Forward (+)

13450241 .. 13451982

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTGTAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTGGTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTAAGGGATGTGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCACGTGCTAAGTCCATGAAGTTCAAGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAATACATCGATGCTGCAGTGAGACATGTTTTGCTCAGACAGGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGACTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATGCTCCTAAAGATGATGTTGTCTACTCTGCACCTGCTCAGGCTGCTGCTCCAGTTACTCTTGTGCAAGAAGCTCCACTCACAACCGTAGATTACCCTGAGATGATTCCTCCAGTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0003729 GO:0003735 GO:0003824 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0008150 GO:0008152 GO:0008534 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

250

Amino Acids

27.52

Weight (kDa)

9.57

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	20 - 94	1.7e-14	KH domain
Ribosomal_S3_C	PF00189	106 - 188	9.1e-26	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	64, 232, 457
AluBI	AGCT	7 cut(s)	85, 155, 256, 325, 392, 424, 704
AluI	AGCT	7 cut(s)	85, 155, 256, 325, 392, 424, 704
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	290, 315, 511
AlwNI	CAGNNNCTG	1 cut(s)	354
AoxI	GGCC	2 cut(s)	351, 747
ApeKI	GCWGC	4 cut(s)	431, 509, 674, 677
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	351, 577, 596
AsuHPI	GGTGA	2 cut(s)	191, 568
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	577, 596
BanII	GRGCYC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	418, 496, 661, 664
BccI	CCATC	3 cut(s)	35, 89, 455
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	3 cut(s)	290, 315, 511
BfaI	CTAG	2 cut(s)	86, 751
BfmI	CTRYAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	4 cut(s)	432, 510, 675, 678
BlsI	GCNGC	4 cut(s)	433, 511, 676, 679
Bme18I	GGWCC	2 cut(s)	577, 596
BmgT120I	GGNCC	3 cut(s)	351, 577, 596
BmiI	GGNNCC	2 cut(s)	578, 579
BmrI	ACTGGG	1 cut(s)	583
BmsI	GCATC	1 cut(s)	496
BmtI	GCTAGC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	583
BpmI	CTGGAG	2 cut(s)	666, 726
Bpu10I	CCTNAGC	3 cut(s)	300, 393, 669
Bsa29I	ATCGAT	1 cut(s)	504
BsaAI	YACGTR	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	290
Bse1I	ACTGG	4 cut(s)	239, 578, 683, 743
Bse3DI	GCAATG	2 cut(s)	294, 608
Bse8I	GATNNNNATC	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	504
BseGI	GGATG	4 cut(s)	46, 100, 404, 466
BseJI	GATNNNNATC	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	294, 608
BseMII	CTCAG	8 cut(s)	129, 179, 255, 297, 314, 544, 683, 720
BseNI	ACTGG	4 cut(s)	239, 578, 683, 743
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	418, 496, 661, 664
BsgI	GTGCAG	2 cut(s)	417, 645
BshFI	GGCC	2 cut(s)	353, 749
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	590
BsmAI	GTCTC	3 cut(s)	290, 315, 511
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	353, 749
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	561, 624
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	353, 749
BspCNI	CTCAG	8 cut(s)	130, 178, 256, 298, 313, 543, 682, 721
BspDI	ATCGAT	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	578, 579
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	673
BspOI	GCTAGC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	294, 608
BsrI	ACTGG	4 cut(s)	239, 578, 683, 743
BssMI	GATC	2 cut(s)	561, 624
Bst4CI	ACNGT	2 cut(s)	248, 718
Bst6I	CTCTTC	2 cut(s)	17, 218
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	87
BstF5I	GGATG	4 cut(s)	46, 100, 404, 466
BstKTI	GATC	2 cut(s)	564, 627
BstMAI	GTCTC	3 cut(s)	290, 315, 511
BstMBI	GATC	2 cut(s)	561, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 674
BstNSI	RCATGY	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	4 cut(s)	418, 496, 661, 664
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	353, 749
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	4 cut(s)	46, 100, 404, 466
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	253, 519, 750
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	354
Cfr13I	GGNCC	3 cut(s)	351, 577, 596
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	5 cut(s)	448, 469, 521, 565, 632
CviQI	GTAC	1 cut(s)	162
DpnI	GATC	2 cut(s)	563, 626
DpnII	GATC	2 cut(s)	561, 624
Eam1104I	CTCTTC	2 cut(s)	17, 218
EarI	CTCTTC	2 cut(s)	17, 218
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	577, 596
Eco53kI	GAGCTC	1 cut(s)	256
Eco72I	CACGTG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	2 cut(s)	351, 577
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	5 cut(s)	451, 472, 524, 568, 635
FaiI	YATR	8 cut(s)	261, 360, 380, 449, 470, 522, 566, 633
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	5 cut(s)	447, 468, 520, 564, 631
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	432, 510, 675, 678
FokI	GGATG	4 cut(s)	53, 107, 411, 473
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	432, 510, 675, 678
FspBI	CTAG	2 cut(s)	86, 751
GluI	GCNGC	4 cut(s)	432, 510, 675, 678
GsuI	CTGGAG	2 cut(s)	666, 726
HaeIII	GGCC	2 cut(s)	353, 749
Hin1II	CATG	5 cut(s)	451, 472, 524, 568, 635
HincII	GTYRAC	3 cut(s)	244, 274, 485
HindII	GTYRAC	3 cut(s)	244, 274, 485
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	5 cut(s)	7, 228, 308, 549, 736
HpaI	GTTAAC	1 cut(s)	274
HphI	GGTGA	2 cut(s)	191, 568
Hpy166II	GTNNAC	4 cut(s)	244, 274, 485, 655
Hpy188I	TCNGA	3 cut(s)	152, 168, 533
Hpy188III	TCNNGA	3 cut(s)	220, 412, 594
Hpy8I	GTNNAC	4 cut(s)	244, 274, 485, 655
HpyAV	CCTTC	2 cut(s)	178, 262
HpyCH4III	ACNGT	2 cut(s)	248, 718
HpyCH4IV	ACGT	2 cut(s)	316, 436
HpyCH4V	TGCA	4 cut(s)	434, 512, 662, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 674
HpySE526I	ACGT	2 cut(s)	316, 436
Hsp92II	CATG	5 cut(s)	451, 472, 524, 568, 635
KflI	GGGWCCC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	624
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	561, 624
LmnI	GCTCC	5 cut(s)	389, 429, 640, 685, 709
Lsp1109I	GCAGC	4 cut(s)	418, 496, 661, 664
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	86, 751
MaeII	ACGT	2 cut(s)	316, 436
MaeIII	GTNAC	5 cut(s)	98, 121, 317, 464, 685
MalI	GATC	2 cut(s)	563, 626
MboI	GATC	2 cut(s)	561, 624
MboII	GAAGA	3 cut(s)	34, 235, 571
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	59, 195, 203
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	8 cut(s)	61, 85, 106, 126, 183, 275, 397, 750
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	437, 674
NdeII	GATC	2 cut(s)	561, 624
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	5 cut(s)	451, 472, 524, 568, 635
NlaIV	GGNNCC	2 cut(s)	578, 579
NspI	RCATGY	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	673
PciI	ACATGT	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	228, 549, 736
PkrI	GCNGC	4 cut(s)	433, 511, 676, 679
PleI	GAGTC	1 cut(s)	316
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	577
PscI	ACATGT	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	577
PspCI	CACGTG	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	578, 579
PspPI	GGNCC	3 cut(s)	351, 577, 596
PspPPI	RGGWCCY	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	354
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	4 cut(s)	432, 510, 675, 678
Sau3AI	GATC	2 cut(s)	561, 624
Sau96I	GGNCC	3 cut(s)	351, 577, 596
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	577, 596
Sse9I	AATT	3 cut(s)	59, 195, 203
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	86, 751
SstI	GAGCTC	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	248, 718
TaiI	ACGT	2 cut(s)	319, 439
TaqI	TCGA	1 cut(s)	504
TasI	AATT	3 cut(s)	59, 195, 203
TfiI	GAWTC	3 cut(s)	228, 549, 736
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	3 cut(s)	253, 519, 750
TseI	GCWGC	4 cut(s)	431, 509, 674, 677
TspDTI	ATGAA	3 cut(s)	464, 465, 620
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	3 cut(s)	253, 519, 750
VpaK11BI	GGWCC	2 cut(s)	577, 596
XceI	RCATGY	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	2 cut(s)	86, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.